Array 1 239066-237795 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNGU010000007.1 Bacteroides fragilis strain 1001285H_161024_D4 NODE_7_length_239963_cov_23.24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 239065 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 238988 47 100.0 30 ............................................... AAGTACAACATCGATACCGATACCCTTTCC 238911 47 100.0 29 ............................................... GATCGTGTTTGCGGAGCATTACCAAGAGG 238835 47 100.0 29 ............................................... GCTATGTTTGTCGGAGCAGTAATAACGTC 238759 47 100.0 30 ............................................... GTCGAGTCCTACCGTAAATTTGGTGTATAC 238682 47 100.0 29 ............................................... GGATTAATTTTAAACCAAGAATAAGTTAA 238606 47 100.0 30 ............................................... CGAACGGACAAAATTACGCTGCTCAGGTTA 238529 47 100.0 29 ............................................... CCGCCGGAGGCATTATAAAGTTGTGCATA 238453 47 100.0 30 ............................................... TTGACCATGTAAGCTGTCTCTAAAGGACCC 238376 47 100.0 29 ............................................... CGCTGTTCACGTGAGGTCTGTGATGTATA 238300 47 100.0 29 ............................................... ACCAAAATGCTTACCATTACGCTGTAGAT 238224 47 100.0 29 ............................................... ATCTACTCTTGGCGCTCAGTATTGGAACT 238148 47 100.0 30 ............................................... AACTACCACCAAGGGCCTTATTGTTCATAA 238071 47 100.0 30 ............................................... ATCTTTGTTCCAATTTGCATACCTAAGCTC 237994 47 100.0 30 ............................................... GAAAATCGGCCGAACGGCTTAAGATGGTTA 237917 47 100.0 29 ............................................... GTGAATACCTTCTTAGTTGTGACAAGCGG 237841 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 17 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGGATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : TTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 144242-143226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNGU010000001.1 Bacteroides fragilis strain 1001285H_161024_D4 NODE_1_length_776247_cov_14.3717, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 144241 35 100.0 35 ................................... AAAATTAATAAATAAACTTCCATAGCTTTTATTTT 144171 35 100.0 35 ................................... GATATTTTCAATCATATCATCCGTTTGCCGATACT 144101 35 100.0 35 ................................... ATAAATCATTTAATTAAAAAACATTACTATAAAAA 144031 35 100.0 33 ................................... ATAGTTATTAGGTCAGAAACAGCTCCCGTTTTT 143963 35 100.0 37 ................................... CATATATATCATAATTTCTGATGTCTCTTTTGCTGAT 143891 35 100.0 35 ................................... GAGCGTCCAGCATTTCCGATTCAACGACTAAGAAA 143821 35 100.0 34 ................................... TTTGGAGCATTGTCTATCATAAAAATTCCGTAAT 143752 35 100.0 34 ................................... AAGCCATCCCTGATGAGTTTTGCGACAGGAAAAA 143683 35 100.0 37 ................................... TTAACATGCTCTGTTGCGGTGTTCTGGTAAAAGGCCT 143611 35 100.0 33 ................................... AACTCGGCATTGGTTAGGAATTCTTCACATTTT 143543 35 100.0 37 ................................... GAAAATCAAAGTTAAATTTTCCTTCTACAAAAACTTT 143471 35 100.0 33 ................................... ACGCTTTTTCCAGAAGCCGGTTACGCCAATTCT 143403 35 100.0 36 ................................... ACAAATTTCTAAGAACCAGAGACTGTGCCGCTTTGT 143332 35 100.0 37 ................................... TTTCCTGTCCCGGTGTGAGCTTGACGCGAACTTTCAT 143260 35 97.1 0 ........A.......................... | ========== ====== ====== ====== =================================== ===================================== ================== 15 35 99.8 35 ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Left flank : TTATATATCAACCTATACGAAAAAAGATAATTAAAACCGTCGAAATAGTCTAAACCTCTTGCGAAAATCAGAATTTGTTTAATTCATTGATTTTCTGCTTATTCTTTTAAATGAAAAATAATATATAATGTATAAAAGCTACGAAAGAACTAGCTTTTTTGTATATTAGTAAATCATTTGCGAAAAAAAACAAATAAGCAATTCGTTCTTTGACATAATACAGTTATTATCTGATAATTATAAATATAAGATTAATCTTATTTTCGAAATAGGCTATAATATAACAAATGAAGCAGGCATTTGCGAATAATGAATCGATCATATCAAAGTGATAATCAATTAAATATCTCTATATTCTACAAATTATTTATTTAAATTACAGAAAAAAAGAGTACATTTGCGAAAATCAGTTCAACACTTCATCTATCTAACTGAATAATAAGTTATTATATATTTATACAGATAGAATACATATTTTATAATAATCTGATTATCAATAT # Right flank : CAATGCCCAGAAATACTGCAAACTTTCCTTATTAGCATGTAGATGTATTCCAATATAAAAATTTAACTACATTAAATAGAATAAGGGGAGAAGTTCAGACATAACGGCTTGGATAAGATCGTCATGGACTTCGGTATTGCTTTTAACATTGGGAAAATGATCAATAAGCAGGAAAAGAAGAAGAGAGGCAGAACTAATTTATTGGTAACTATTTTAATAAGCTGTGGAATAGCTTACCAAAAATACACAAAGGCGATAATACTACGGGGCTGTCCAAAAAGCAAAGTGCCCCCCAAAAGTCGGATAGCCCCTTTTACCATTGTTTATTTCGGTGAAAAGCCTCATATTACCGTTGTGAAAAATTAACAGTAATAGTTAAGATAGTATTTAGAGAGTTAACCTCCAGCCAAAATGTTCTTTTCCGGTTCGTTTATCGGAAAAAATATCTCCCAACCATCTTGTTCGTGTTGTAAGTTACATTGTAGATGCTTTGGATATTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //