Array 1 51278-45647 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSGU010000007.1 Acinetobacter baumannii strain KPC-SM-125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 51277 29 96.6 31 ............................A AAATCCCATTTGGTTCCTTTAAAAACTAGAC 51217 29 100.0 31 ............................. TGAACGTGACCCAAATTGGGATTTGTAAAGA 51157 29 96.6 31 ............................A TGTTTCAATCGCTTCTGTAAGCGATTCATCA 51097 29 96.6 32 ............................C TGCTGCTCCCTTGCGAGGGAAAATATTGTCTT 51036 29 100.0 31 ............................. GAATGATAAAACCATTAAAGCCGCTCGTGAA 50976 29 96.6 31 ............................A TAAACACTTAGAGATTGAGCAACAGGTGTTT 50916 29 100.0 31 ............................. TACTGGCACAAAATGGCGCATTACCTTATGT 50856 29 100.0 31 ............................. GAACCCAGCCGCAGCTAATTCATCTGCATCT 50796 29 100.0 31 ............................. GCTGCTAATGCTGCGTCTTCACTTGATTTCA 50736 29 96.6 31 ............................A GTAGGCTTAGCACCATTTGACATTAAACGAG 50676 29 96.6 31 ............................A GCACAAGCATCTGGAATTGCCACACCACAAC 50616 29 96.6 31 ............................A ACAAGAGAAAGTTACAGTTGAGTCTGAAAAT 50556 29 100.0 31 ............................. TAGCTTGTTCTTTGGAATAGTTATATAAAGA 50496 29 96.6 32 ............................C AAATGCGTCAGAGCTGTGTGATGCCCAGTCGT 50435 29 100.0 31 ............................. ATGCCGGCTGGACCACCAAGTAAAGCCATAA 50375 29 100.0 31 ............................. ACAACGATGAAGTTGCCGGAATAAGAGCAAT 50315 29 96.6 31 ............................A TCAATCGCGCCAACCTTCATGAGCGCATAAG 50255 29 96.6 31 ............................A CTCTTGTTGAGCTTGTTGAAACTCTGAGTAA 50195 29 100.0 31 ............................. TGAGGTTCATAAGGCCTACAATAAGTAATAC 50135 29 96.6 31 ............................A ACACCTCGGCGCTTTTTTCAATGTATCCATT 50075 29 96.6 31 ............................A CACTATAGTTCGATTGCGTGTCCCACCAGAA 50015 29 100.0 31 ............................. CTTCCAGATCCGAGACATTGTAGAAAGGCAT 49955 29 100.0 31 ............................. CAATCTCAGGACTTTGGGGCACTAGCCTTAC 49895 29 100.0 31 ............................. ATGGATTCGGTCACCTAGGTAAAATAATGAC 49835 29 96.6 31 ............................A TTACCCTGAAGGGAGAAATTTACCACGAACT 49775 29 96.6 31 ............................A AATCTGCTTTGACTTTGTTAAACCTTCTTTA 49715 29 96.6 31 ............................A CAACCTATACAAGTCACGTTTATGGGGGTTA 49655 29 100.0 31 ............................. GCATTGTAGGCCATGAGTGCTTTATCCATGG 49595 29 96.6 31 ............................G TAGTAATTGCTAATGCATTGATAGAACCAAT 49535 29 96.6 31 ............................A AGAATTGCATAACTTAGTACAAAGCCGCTAA 49475 29 96.6 31 ............................G CCTAGCAAAGTCATACTGACAACAAGAGGTA 49415 29 96.6 31 ............................A AGTGGACCAGATACAAACGAGTTCGCATCGC 49355 29 100.0 31 ............................. TGACGCATCAAGAACGAAGCCGAGAATGATT 49295 29 96.6 31 ............................A AAATGCTAAATCGATTGACCCGATCCACGCC 49235 29 96.6 31 ............................A TATTAAAGACTTGGCTGTGCAACGCGGTAAG 49175 29 96.6 31 ............................A AGTACGCCATATAACCGAATTGTTTTCAGCA 49115 29 100.0 31 ............................. ATACCTTGATTTCACGTATCAATACGGGATT 49055 29 96.6 31 ............................G GGAAGCCTTCAATGTATTCTTGATCGTTTGT 48995 29 96.6 31 ............................G AAGCGATTGATTTAATTAATCTTGAGCTTGA 48935 29 100.0 31 ............................. TTGCCGTGCTTACTGCCGTCAACAGATCAAC 48875 29 100.0 31 ............................. TTCTCACGTCTTGTAGTAAAGGCATGCCTTC 48815 29 100.0 31 ............................. ATCAATGGTATTGGCAAGATTACGAATTTCC 48755 29 100.0 31 ............................. ATAGCTAAACAATTGTGATGTTTAGATATAA 48695 29 96.6 31 ............................A TCAAATTGCCAGCAGCAGTTCCAACATATCG 48635 29 100.0 31 ............................. TAGATCCATGCTGCGGTTCAAAGATGATGTG 48575 29 96.6 31 ............................A AATCACAATTGAAACGAATGGTAGAGCACTT 48515 29 96.6 31 ............................G TAATGATCATATCTAGCGTATAGGCCATTTC 48455 29 100.0 31 ............................. TCTTCATCAACCACATTGATTGGCTCTAAAC 48395 29 100.0 31 ............................. CACTTCAAAATAGCGTCTCCTCAATTAACGA 48335 29 96.6 31 ............................A ATAAAACGCCTATTTAGATTGGCTGCGGCCT 48275 29 100.0 31 ............................. TCAATCATTGCTGACTGAACAGACCATGTAC 48215 29 100.0 32 ............................. AATTGATGCGCATGATACTGCTGAAAATGACC 48154 29 100.0 31 ............................. AGAAAACCGTAAGAAAGGTATTGGCGGTTCA 48094 29 96.6 31 ............................C GTCATAAGCAAACCCATATTGTCTAGCTTGC 48034 29 96.6 31 ............................A CGTCTTGCAATACCCGCAATTATTTCTGTCC 47974 29 100.0 31 ............................. CTCTCCTCATACCCAGAATTTCGCCTTGTCT 47914 29 96.6 31 ............................C GCACAGACATTCAACAATACGCAAACGGTGC 47854 29 96.6 31 ............................A TAAACTCGACATATTTGCCGTAAAGCTTACG 47794 29 100.0 31 ............................. ACACTCGACAGAATTTGAACTGTACAACCGA 47734 29 96.6 31 ............................A ATGCGCCACTAATAGCTTGAACTGTTGCCCA 47674 29 96.6 31 ............................A TTTCAAAAATCCCCAATTAGAGCCACTGGCT 47614 29 96.6 31 ............................A AGCAGACCCTAATGATCCTACAGCACCTAAA 47554 29 96.6 31 ............................A TTAGTGTGCTTGGTGTTACAACATCATTTTC 47494 29 100.0 31 ............................. AACTTCATCTTTTTACAGGCAGCAAATGCAA 47434 29 100.0 31 ............................. TTCTCATATAACAGGGTAGATGCGGTTGCAC 47374 29 96.6 31 ............................A AAAGCGCATACGGCAAGTACAACGGTTTCGA 47314 29 100.0 31 ............................. TTGACTTACTTCAGTTCTCTGTTGAAGATGT 47254 29 96.6 31 ............................A GAACACCTAAGCCATGAAGTACACCAAGTAA 47194 29 96.6 31 ............................C ACGCATGTCGGAAGCTCGGCTTTTTATCTAC 47134 29 100.0 31 ............................. TTAACTCCAGATGCTACCAATAAGCCAGTAC 47074 29 93.1 31 ..........A.................A CATGGGAGCTTTCATTCATATATGTCATTAG 47014 29 100.0 50 ............................. GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGGATTTGGCGCTC 46935 29 89.7 31 ....G.......CC............... CACATCACTGATGCACAACAACTATTTTCTG 46875 29 82.8 31 ...GC.......CC..............A CAGGGGTCAAGTTCAGAAGATTTACGTTACA 46815 29 82.8 31 ...GC.......CC..............G TCATAGTCCTTCTGAACACCAAATGTATAAG 46755 29 82.8 31 ...TC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 46695 29 93.1 31 ....C.......G................ TAAATGCTCAACTACTTCTGTAGCTAATGGA 46635 29 89.7 31 ...GC........C............... CTCAACTCATTGATTTTTTCTTCTCTTGCCA 46575 29 89.7 31 ...GC.......................G TGTTTTTCGATATGCTTCGAAAGGTCATCCT 46515 29 82.8 31 ...TC.....A.CC............... GATGGTTCAGCATATATAGCTAGACGTACAC 46455 29 82.8 31 ...GC......TG...............A TCACCAAACACAACCAAAGGTGAACGGGTAT 46395 29 86.2 31 ...GC.......CC............... TATCTGCCATACCCGACTGCTTTGTTCCTAA 46335 29 86.2 31 ...GC........C..............A TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 46275 29 89.7 31 ...GC......T................. TCAAATGATTTAATGAGCTTGTAGCCATTTT 46215 29 86.2 31 ...GC.......T...............A CGTCTTCTAATGATGGACTTTAATCCAATAT 46155 29 79.3 31 A..GA.......TC..............A TCTCACTGAAGATATGACCATCACTTTCTTC 46095 29 82.8 31 ..CGC.......CC............... TTATAACCACCAGTTAAAGTATTGACTAAAA 46035 29 72.4 31 ...GC.G...A..C.AT...........A CAATCGGGGTCGTGGTCAAAAAGATTATCAG 45975 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 45915 29 79.3 31 ...GC....T..TC..............A TTAAAGCATTTTCATATGAGCCTTCCTCATT 45855 29 82.8 31 ...TA......TCC............... TCGGATCAGTCCAGTCATCATCCTCGTCAAT 45795 29 86.2 31 T..GA.......G................ ATCATTGCGCGACAGAACGCATCAATTAATG 45735 29 82.8 30 ...GC.......CC..............C AAGCTGATGCTTCCTTATGGTTACAGTCAG 45676 29 86.2 0 .G..G...................AT... | C [45671] ========== ====== ====== ====== ============================= ================================================== ================== 94 29 95.0 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGCCTTGAGTTTACGCGTGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACAT # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [78-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 56871-57258 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSGU010000007.1 Acinetobacter baumannii strain KPC-SM-125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 56871 28 89.3 32 ...TG.......T............... ATTCACGCCCGTGCAAAACTTCAATTCGACAA 56931 28 89.3 32 A..T..............A......... TACTGTAAAACTTTTCCATTTTTGATAGCTGA 56991 28 82.1 32 A..CG.......TC.............. TCAAAAGACTGATTTGCATTATCTAGCGTGTA 57051 28 92.9 32 ............CC.............. AATTAGGCACAAGACAAGAATCGGAAGCTCTA 57111 28 100.0 32 ............................ ACTGCGCCTGAAGTAGCCATTACATCTGCGTC 57171 28 100.0 32 ............................ TCTTCATCTGTTACATATGAAGCAAGGATCTT 57231 28 96.4 0 ............T............... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 92.9 32 GTTATTCATCGCATAGATGATTTAGAAA # Left flank : CCTAAATCTACTCTATTTTGAGGGTAGGGCATAAAAGAGCAACCTGTTGTGAGGTTATGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGCTCTTATTCCTCACAAATTATAAGGATTGAAGATAGATCTACGTCTCGCTGTATAGCAGGATGAGACAAAAGTTTGAAATGTTGTGCTATCATTTGATAGTCCTCCGTAGTAATTGAACGCTGTGGAAATGGACAGAGCAGATATGAAGTTTTCGAAGGCTAAGTATCTGCTTTTTTTATAACCATTTTCTAAAAAAGCTAACTTGTTTTTCTTATTGTGTCAATAATTTATTTAAATTTAAATAAAAAAATTAATAAAAAATTCTATAAGTATTAAGGGATCATTTTTATAAGGGATTTAATCTTTTTTAGATCATGCTAATATATATACATTCACTATCGTGAAGATAGTTGAGAAATTAATACTTATAGAAATGTTATAAGT # Right flank : AACATTCAAAGAGGCTCATCGAATCCAATCGAATTTTATCATCGCTCAGATGATTCAAAATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTAGGAGCAAAGCATAAATTTGCAAACGATGGTGCATATCCAGTTGCATCGACCAAAAAACAACAAAAACTACTAATGCTAGATGAATGGG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //