Array 1 257663-258911 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOGL01000020.1 Escherichia coli strain 478 BN4_478_1_(paired)_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 257663 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 257724 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 257785 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 257846 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 257907 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 257968 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 258029 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 258090 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 258151 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 258212 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 258273 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 258334 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 258395 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 258456 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 258517 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 258578 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 258639 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 258700 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 258761 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 258822 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 258883 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 284611-286469 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOGL01000020.1 Escherichia coli strain 478 BN4_478_1_(paired)_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 284611 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 284672 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 284733 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 284794 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 284855 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 284916 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 284977 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 285038 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 285099 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 285160 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 285221 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 285282 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 285343 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 285404 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 285465 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 285526 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 285587 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 285648 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 285709 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 285770 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 285831 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 285892 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 285953 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 286014 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 286075 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 286136 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 286197 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 286258 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 286319 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 286380 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 286441 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //