Array 1 160831-160689 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL622352.1 Staphylococcus lugdunensis M23590 SCAFFOLD2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================ ================== 160830 26 96.2 32 ..............A........... GGCCCCCAACACAAAGAAATGCAACAAGCATT 160772 26 100.0 32 .......................... GGCCCCAACAAAAAGACCTTTCCAAAAGAAAG 160714 26 96.2 0 ..A....................... | ========== ====== ====== ====== ========================== ================================ ================== 3 26 97.5 32 TCCACGAACAACGCGAGTTGGGGTGG # Left flank : CATATTATGAGCATTTACATTATCCGCTCATTTGGTATGGCATTTGTAATGATGCCATTGATGACTGCGGCAATTAATGCGTTACCACCACGTCTCATTTCACATGGGAATGCATTTTTAAATACGATGCGTCAATTGGCTGGATCAATCGGAACAGCGATATTAGTCACTGTTATGACTACCCAAACAACGCAACATTTTAATGCATTTTCTACAGAATTAGACAAAACAAATCCTGTTGTTCAAGACCATATGCGTGAACTTGCAACACAATACGGAGGAGAACAAGGCGCAATGAAAGTACTATCTATGTTCGTCCAAAAAATATCATCCGTAGATGGAATCAACGACGCATTCTGGATTGCAACAGCACTTAGCATACTCGCATTCATCCTAAGCCTATTCCTAAAAAGCAAGAAAAAAGCAGACGCAGAACACGACAAAATGATGTCCAAAGAACATATATAGGGGCCCCAACAAAGAGAATTTCGATCAGAAAT # Right flank : CTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTGAAAATAGAGAACAGCAGCAAGATATTTTCTAATTGAAAATAATCTTACTGCTGTTTTTCTTAGATTTATGTCCCAGACCCACTCATTTTCATATTTAGTAGCTATATCATAGGTTTATAATCGCTTAATTTGACGTTTACTTCTAAAGAATAAACTTAAGAATATCAATGCTAAACAACAGATAAGTAAAATAATGGCATTATGTGTAGCATCTGCTTCTATGATAACTTGATCCGGCGTGATTTGTACGTAAGCATTATTTAACAACTTTGCTATACGTTGTGCCAAATAATCAATAGCAATCATAAAATATACGACTATTGCCAACATGCTTGCAATAGACAAAAAGTTAAGTAATTTAAGCAATGTACGATTAAATAGTAAAGTTAATATTGTTAATATTAAACTTAAAATGCATAAGCCAAAGAAAATATTGAATAACATGTTTATT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCACGAACAACGCGAGTTGGGGTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 733614-733446 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL622352.1 Staphylococcus lugdunensis M23590 SCAFFOLD2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 733613 36 100.0 30 .................................... CACCTATTAGATTACCGTTCTCATCTCTAT 733547 36 100.0 30 .................................... GATAAGGGATTGCTTTGTTGGGCATGGTTT 733481 36 97.2 0 .............................A...... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 99.1 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATAC # Left flank : CTGGATTTGTCGAAGCAGTCAGTCGTACGGGAAGTATTATTGGGACATTTATTTTCCCTATCATTCTAGCTGCAGTAGGCCTTACCAACACCATGTTAATCTTAAGTATCGTACCATTAGTTGGATTAATTATTACAAGCGCAATCAAATGGGAACCTGTAGGGAAAAATGTTGAAGTAGAATAGAAAAGATATACCATGCGTACCTGTGTAGCAGCATTATTACTGTTACATAGGTATTTTATGCTTACTTTTTGTTTGTCACAAATAATCTGTGTCATCACAATACTGCTATTAAATCTATTTGTATTTATAGGATATTAGATTTTGCAAATAGAAAAAGAATAGTAGTGTTTATTAAAAGGGAGTAGCATTTTTGTTTGTCAAAGTATATATTATAGATAGTTAATATGAGTTTTGGTATTTATAAAAATAAGCATATTAACAAAGAAGCTATACAGTAGAGTTTAAAATCTATAAAGTTCATTTTTAGAGCTAGAG # Right flank : TATGTAAAATCGTGTTGCTTATTATACATCTTATCTATAGGACATTGAGAGATTATTGAAAATTAATTTTCGAAATATTATAAAATTATATTGATTTTTTAATTCCTATAAATTATAATTGAATTGTAGATACAAGTTTAGCTAACTTGTACTTATACCTAAAATTACAGAATCTACTGAAACAAGACAATATGTCGTGTTTATCCCATCAATTTATTGGTGGGATTTTTTTATGTTTTTAGCAAAAAGTAATACCATACTTTATATTTTTAAATTATAATAAAGATATAAATAAAGGTGGGTGTATATAATGAATCAAAAATTTATTTTAGGTTTAGATATTGGTATTACATCTGTTGGATATGGTCTCATAGATTATGAAACTAAAAATATTATAGACGCAGGTGTACGTTTGTTTCCTGAGGCTAATGTAGAAAATAACGAGGGCCGTCGAAGTAAAAGAGGTTCTCGAAGACTTAAGAGAAGAAGGATACATAGAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //