Array 1 15786-16534 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUOW01000129.1 Staphylococcus epidermidis strain 897_SEPI 657_36924_691709, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 15786 36 100.0 35 .................................... ACCATATTGTCGCTTAGTATTCATAGCAAATTTTG 15857 36 100.0 36 .................................... AATATAAGCGTAAAAAGTATTGTCTTTATATTGACT 15929 36 100.0 36 .................................... TTCTGAAAGCCAACAATTATTTTAAATTCTTTTCGC 16001 36 100.0 37 .................................... CTTTAAGGTAACTGAAATTGATAACACTCTTCCAGAT 16074 36 100.0 34 .................................... GGTGCCAACCTGTGCCCCCTAAATCATTTCTGTA 16144 36 100.0 35 .................................... CATTTCAATCATATCCTTTTTAATAATTTTTTTAT 16215 36 100.0 37 .................................... TGTTCGTCTATGCCGTCATAATGTAAATCACTTACTA 16288 36 100.0 34 .................................... TTCAATAGCCCAATTAATAACATCTTTCTTCAGT 16358 36 100.0 35 .................................... TTAACTTCATTTTCACGACCTACTAATGGACCTTG 16429 36 97.2 35 ...................................T ACATCGTCAGCCATGTGGTTTGGTAAGTTTACAAG 16500 35 86.1 0 ..........T.................G.-...GT | ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 98.5 36 GATCGATAACCACCCCGAAGAAAAGGGGACGAGAAC # Left flank : GCAAAAATGGATTTTCGTTTCTTATGATATGCAATTAATCCTCCAAAAAATTAAGCATAATGAAAATTGTAAGTTTCATGCGGTTCCTCATCTTAATTTCTATGAAATGAGGTACGACCTGAGGAGTAGGTTTACTGAGAAATAATGTATTTACGCTGGGGCTTCAAGTCCAATTTAGTTTTTACATTTCATACTTGCACATTATCAAACAAAATCAATTATTAAAATAGATGTTTAAGTATTTTTCTTCTTGTAGTGAGGGAACGTCTAATTTTTATTCGAAATATAAAAAGAAATGAAAGGTTAAATTAATATTAATTTTATTAAATGAATAGGCTAAACCATCTTAAATGTAGTATACTATTAATATAAATGTAATTATTATAAAATTTGTCAAAAAAAGTGACATATCCTATAATCTTGTACTAGTGATTGTCATATTTTTTGACAGCAAAAATGATGCTTGAAATATAGTTGTGATGGCATTTGTTAAAGTATCT # Right flank : TGTAAATCTAACAACACTCTAAAAAATTGTAGATTTTGAATAAAATACGCATTGATTAATTTCTAGGGGATGGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACTGCGAAGGAAAATAGCATTAAATTTAGAAATGTCATAGATAAAAGTGAAAAATTTTATTTGTTTGAAGAAATTGAAGCTATTATTTTTGATCATTATAAAAGCTATTTTTCACATAAATTGGTAATTAAATGTATAGAAAATGATATTGCGATTATATTTTGTGACAAAAAGCATTCTCCAGTTACACAGCTCATTTCTTCATATGGCATGGTTAATCGTCTTAAAAGAATTCAAAGTCAATTTCAGTTATCGGGAAGAACAAAAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTTTTAACCAAACACGATGTCTTGAAAATAATTTACATAATGAAAATGTTAAGCTGATGTTAGGTTTTGCAAAAGAAGTGAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACCACCCCGAAGAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [15,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 1 561-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUOW01000029.1 Staphylococcus epidermidis strain 897_SEPI 121_12272_217869, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 560 36 100.0 37 .................................... TCTAAATTGTTTAATTTTGGATTTTCCATTTGCAATC 487 36 100.0 37 .................................... TAGATGAAAATAATGAACCATTAGTAGAAAAAATATT 414 36 100.0 35 .................................... AACGTGCTTATCCGTTAAGCTTCAATTATTTAGAA 343 36 100.0 37 .................................... TGATTTGGAAAAATTCACAAAAAAACTAAAAAAATTA 270 36 100.0 37 .................................... CTAACTTTTTCGCTAAATATTTTCTCACAACCAAAAT 197 36 100.0 36 .................................... CATATCTCTTTGATCATTCATTTGTTTATCACTTGC 125 36 100.0 36 .................................... TTCTAGTTACGTTGTCAATAGTTTTTTTTAAATTTC 53 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 8 36 100.0 37 GATCGATAACTATCCCGAAGAACAGGGGATGAGAAC # Left flank : TTTTTTAGTAAAACCACTAATAAGGGGACAGAAAGCTTATGAACACAAAAATACTTGAGATTGGCTTCTGTCCTTTAGATTTTACAATCGATTTATAGACCAAATAAAATTTAACTATTTTGTTTATTCAAATTCAGAAGAGCTATCCTCGTGTGATGTGACTGATCTTTCTAAACCGTATAGAAATTTTTCAGATTATTGTTAATAAGCAATCTCTTAAAAAATAAAAATTAAGGAAATTTATATTACTATTATCTAGGTACTAATTTTATCTTTTCTTTTAAATTAAAAAGGAAGAAAAAGTTAAATTTTTATTAAGTTATACACACGATTAATTATTAGCGTGTTAAATGTAGTATACTGTTAATATAAGAAAAGTCATCATAATATTTGTCAAAAAAAGTGACATTCTATATAGTAGTGTGTCGTTAGTTGTCACATTTTTTGACAGCCAAAATAATAATTGAACCCTAATGGTTATGCTATTTAGTGAAGCATCG # Right flank : CATTAGGTGTTAAATCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTATCCCGAAGAACAGGGGATGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //