Array 1 961-2575 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQWB01000040.1 Chromobacterium sp. MWU14-2602 NODE41length55717cov22.727373, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 961 29 100.0 32 ............................. CCCAACCCCAACCCCAAGAAGGCGGACCCGAA 1022 29 100.0 32 ............................. CAGGCATCCAAATACTGGCCGCATCGCGAGCG 1083 29 100.0 32 ............................. CAGGCATCCAAATACTGGCCGCATCGCGAGCG 1144 29 100.0 32 ............................. GCGCCGGGGAGCCTCCCGGACAATGCCGTTGT 1205 29 100.0 32 ............................. ACCCTGCTGGCGCTCGCCGCGGGCCTCGAGCA 1266 29 100.0 32 ............................. GCCGTATAGAGCGAAATGTGTCTGTTTCTAGA 1327 29 100.0 32 ............................. ATCATGAGGCCACCCCCTGCTAAAATTGGTTA 1388 29 100.0 32 ............................. AAAAATGCCGTAGCGTTCTTCCAGCTCGCCAA 1449 29 100.0 32 ............................. TCTTCGACATCTTCGTCGCGAATGCCAGTTAC 1510 29 100.0 32 ............................. ACTTCCGCCGGGAGGCGGAGCAGCAATTCCCA 1571 29 100.0 32 ............................. GGAGCGATGAATCAGATGGCCCAGGCTATCCA 1632 29 100.0 32 ............................. ACCGTTAATGCGGATGGTGAGGTGGTCGTGAA 1693 29 100.0 32 ............................. CGCTTGGCGGCGCAGCCAAACCGAGACCGCGG 1754 29 100.0 32 ............................. GCGACCAGCGTCGCTATTACGTCGCCTGTCCT 1815 29 100.0 32 ............................. TATGGATTTCGATTGTCCCGTTCGAGGGCAAT 1876 29 100.0 32 ............................. CCGGCGCAGTGAATCGCCGGAGCTAACCGGAA 1937 29 100.0 32 ............................. CTCGACAATCCAGTGAGACACGGCGTTCTTGA 1998 29 100.0 32 ............................. CCGGCAATAGACTGGCTGTGCGGATCGGAGCG 2059 29 100.0 32 ............................. GCAGCGGCGTACTATCCCCCAGCGTGAATGGC 2120 29 100.0 32 ............................. CCACGGAAGGTTCTCACGGAGTTTTCTTGGAC 2181 29 100.0 32 ............................. TCGCGGTTGCAGAGAAGTCCAGTGCGGCACCA 2242 29 100.0 32 ............................. GTGATCACAGCCAAGAAGCAGATCATGGGAGC 2303 29 100.0 32 ............................. ACTGAGGCATCTCTTATTGATTCATTTGAGCG 2364 29 100.0 32 ............................. CTGGGCGAAACTGTCGGAAACCTGGAGCGCAA 2425 29 96.6 32 ..............T.............. CAGACTTACACGGACCTGACCGACGCTAAGAC 2486 29 100.0 32 ............................. CAGGCTGCAGTTGTGATAGACCTTGACCAGCA 2547 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTGGACGCCGGCGGCCTGGACAAGCCGGAGGCGCAGGGCGTCGTGGACGCGGCGTTTCCGGAGGACGAGGGGTTGGGCGATGCTGGTCATCGTACTTGAAAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCTATCTGGCTCTTGGAAATCCGCGCCGGCGTTTACGTGGGCGCCTACAACCGAAAAATCCGCGACTACCTGTGGCTGCAGGTGGAGGAAGGGCTGGAAGACGGCAATGCGGTGATGGCCTGGCAGGCTACTACCGAGGCCGGCTTCGACTTCGTCACCTTGGGCGCCAACCGCCGCGTGCCGGCCGAGTTCGACGGCGCGAAATTGGTGTCTTTCCTGCCGCCTCCCGTATCGGAAGAGACTGGCGAATAGGGGCCGGGCGGCGCGGATGGGAAGGGAGGTTTGGCTCTTTAAAAATCGGTAGATTTTTAGATGGTGTTTTTTGTTTTGAAAATCAGTTATTTGCAAATGGT # Right flank : GCGAATGATCCCATGAGTCATGCGCGTGTCGCGCTCGCTGGAAGGTTTTTCCTTTTCAAGATAATTCATATAAGTAAGATCTCTCATTGAATGAGTGGGGGCCAAGTGCCAGTCTGAAATTCCCACATAGGAGGAACGAAGATGGCTTTTCCCACGGCAGTCAACGATCAAATCACCGACGCCATCGCCCAGGCCAATGTCAAGGTGGTAGCCGAGGCGCCGGCCATGGCGATGGGGGCGATCTATCAGACCATGGCGCATTCCGCCGGCATTCTGTTTGAGAACGCCGTGTCATCGCAGCAGCAGATGACGGCGCTGGCGCAGTCAATGGCCAATATGGGCGTGATGCAGATCTACAGTCTGGATACGCCCCCATCGGGACTGGCGCTTGCCGGCGTGCCGGACAATCTGTCCAGCTTGCTTGCCGTGCTGCAAGCGTTTCGCGTGCGGGCCGGGACGTGACGGAGGGGGTGGCTTGACGCGCGCTTGAGCCAAGCCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4585-5284 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQWB01000075.1 Chromobacterium sp. MWU14-2602 NODE78length15702cov24.809450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4585 29 100.0 32 ............................. CCGTAGGGGCCTTCATAGCTGTCAATCACTTC 4646 29 96.6 32 ............................T TCTTATGCGATGGAACGCCTGATGCGCCGGAT 4707 29 100.0 32 ............................. CTGCTCTAGGTGACGAGATGAGAACGTTCACA 4768 29 100.0 32 ............................. TGCGCGGCCTGGCCGTCCCACTCAACGACGAG 4829 29 100.0 32 ............................. GCCGCCGCTCTGACTTCGGCCATCGCCACACT 4890 29 100.0 32 ............................. CATGGTGTCTAGAGTCGGCGAACGTTCTCCAC 4951 29 100.0 32 ............................. ACCCGAAGTATGTGGCAAACCCGGCCGGCGTC 5012 29 100.0 32 ............................. TCGCGCAGTTCTGTGGCCATGGCTCACTCCTC 5073 29 100.0 32 ............................. CGGGAATCTGGCGGTGTACCGGAACTCGGTGG 5134 29 100.0 32 ............................. TTGGTCAGAACCGAAACGCCCAAATGTCGAGT 5195 29 100.0 32 ............................. CTCCTTCGAGGTGGCGGAGAAACTTGCGGCCC 5256 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCGAGCGGGGATGAACCG # Left flank : TCTGCTGGCGCAATGGCTGTACAACGTGCCGCCCTTGTTCCACCTGTCCGCCGCCACGCTCAAAACCAGGCTGCCGCAACTGCAATGCGCGGACCGCGCCTTCCGCCCCCTGCATGAGCAACTGGCCACCCAAGCCTTGATTGGATTTGCCTGGTTGAACGCGGAGCATACGCTGCAGCAAACTCGTTTTGCGGATGGCAGCCGGCTGACCGCCAATTTCGCCGAGGCGCCGGTTTCGCATGCAGGACAAGCCCTGCCGCCGCAAAGCCTGCTAGCCGAGCCGGCAGGTCAGAAGCCGCGAATGTTGAGAGTGGCGGATTGCGCGGGGAATTAGGGCGGAGCGATAATGCTGGTGTCGTTTTTGGGCGGTGTTAAGTTGGTTTGACTCCGCCCGCGGGCGATGCTGTCGCTGTGATTTAGGCGATGATTTTTTAGGCAGAAAAATCGGTAGGATTTTGGGTGGTGTTTTTGTCTTTAAAAATCATTGGCTTGTGATTGGT # Right flank : TAAGCCCCGCGTCGAAAACCGTCTCCGCGGAGTGCGCAGGCGGTGGGAGCGGCTAGCCGAAGGGATGATCCATGCTGATGAGGCGGAGTATTTTTTGAATTGGCATGAGGCGCGTTCTATACAATTCACATATCAATTCGTCATGCCGCGGCGCGGGACGATGTTGCCGAGCCTACGGCGATGGCAGGCATCAATAGCCTGATATCCCTTGGCAGAGCGATTCTGGGCGGTATGCCAGCGCGCGCAGCGGATATCCATGGAGGCTTTCATGAAAAAGAGACTGCTCTTGCTGGCCTCCATGGGGGCCTGGTGCTTGGCGGGATGCGCCGGCATTGATCGGGACAGCGCCAAGGCGTTGGGCAATGCCGGGTTCACGGCCGCGCAGGCGGTTCAGCAGCAGAGCGACGCGGCAAGCAAAACTCTGTCCAGCCTGCCTGAGTGGTGGGGTGTCCGGGATGCGCTGGTCTGCGCCAACATCAAGGCGCCGGACATCATGAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //