Array 1 1741-614 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZI01000241.1 Salmonella enterica subsp. salamae serovar 55:k:z39 strain BCW_2788 NODE_241_length_1777_cov_1.26154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1740 29 100.0 32 ............................. CTAAACATCGTTATAAGCTAAAACCTCCCCGT 1679 29 100.0 33 ............................. AATTTTCAGCAGAAAAACGTATATGAAATCTAC 1617 29 100.0 32 ............................. GTGTTTAGGGAGGTTAGGGATTCTCTTGGAAT 1556 29 100.0 32 ............................. GGAACCGTCCTCGGGGAGATGTTCGTTATCGT 1495 29 100.0 32 ............................. ACCTATACCGCCAGCGAACTGGCTATTGGGCT 1434 29 100.0 32 ............................. CGGTAACGCAAATTCTTGGTTCGACCTTGTAC 1373 29 100.0 32 ............................. AAAAACTGACGTGGTTTGAACGCAGGGTGCTG 1312 29 96.6 32 ............................A GTCATTCCCGTTTCTGGAAATCGTGGGGGAAC 1251 29 100.0 32 ............................. TGATTCGCCGTAGTATGTTAGCCTCAACGTAA 1190 29 100.0 32 ............................. TTTTCGCGCCGTCCTGAATTGAAATGGAAACA 1129 29 100.0 32 ............................. ATGCGCCTGTCTTTTTTCCACTTCAGGCTCGG 1068 29 100.0 32 ............................. AAAACATATAGAAATGAGCGTTTCATGCATTA 1007 29 100.0 32 ............................. TTTACCCGCCGCGAGGTTCTCTTTGGTATTGA 946 29 100.0 32 ............................. TTGACCGGACGCGCGGTTATTCAACTAACCGT 885 29 100.0 32 ............................. TGTCCGATTATTTTATCGCTATTTGTGAAACT 824 29 100.0 32 ............................. GCATCAGCGGTCATGACTACAGGTTCAGTCCT 763 29 96.6 32 ...........A................. ACAGGGGGAACCGGGAGCCTCCGCAAGCTTGA 702 29 96.6 32 ............................C CACGAAGGGTCCGGTTGTTTTTGGATGCCCCC 641 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.1 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : TACCGACACTCCCATTTGAAGAACAGCGCCATATGA # Right flank : TTGCATAATCATAATCAGTGTACCAGTAATGGCTTGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGGACTTTTATACAGGAGAAGACCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGACCTGGAGCTGATAAATCGTTGAGGGCCAAACCAGGATTAAGCCTGTTGGTCCAGGATGAATCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATACAAAATGCGTTGACGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATCACCAGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCGCGGCCGATTGGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 812-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZI01000046.1 Salmonella enterica subsp. salamae serovar 55:k:z39 strain BCW_2788 NODE_46_length_32318_cov_1.53557, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 811 29 100.0 32 ............................. AAAAACCTGCGACCACGGAATATCCAAATTTC 750 29 100.0 32 ............................. AATTAGAAATGATCGATGTAGCCAGGAACGGA 689 29 100.0 32 ............................. CAGGCCTAACTCAACGGCCCGGGCGAAATTTT 628 29 100.0 32 ............................. CCTTCATGTTCGATGATAACTGTTTTATTACT 567 29 96.6 32 ............................T CAGGTACTCTATCCTGATAATGTTCTTCAGCC 506 29 100.0 32 ............................. GAATTACGAGAGAGAAATGAAAACTTTAGTTA 445 29 100.0 32 ............................. TTAACTGCGTCAATATCGGTGATGATAACTCT 384 29 100.0 32 ............................. CGGTCGATGTCGCGTCGTCCCCGTACACCGCC 323 29 96.6 32 ............................C AGTGCCGGGCCAACTGGCAGGGATATCAAATA 262 29 100.0 32 ............................. GGCGACGGCGTAGAGCTTGCCTTGGGTACGCC 201 29 100.0 32 ............................. CAAAACCACCACGTGAAACAACCTTGTCCTGA 140 29 100.0 32 ............................. GGACTAAATCGCAGATACTGCTGTCCAGAGCA 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATCGAGGCGCTGGACGAACTGTTAGCCACGTTGAGCGATGATAAAACGCGCGTAATTGCATTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCCATGCGAATTTCGTTGAGTGTATAAAAGCACTGATAAATTTTTCCATTGCGAGGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTACTCTATGAAATTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTCATAAACAATGATATACATTTAGT # Right flank : GACACTCCCATTTGAAGAACAGCGCCATATGACGTGTTCCCCGCGTCAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2181-2758 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZI01000083.1 Salmonella enterica subsp. salamae serovar 55:k:z39 strain BCW_2788 NODE_83_length_20011_cov_1.40926, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2181 29 100.0 32 ............................. ATCTTGCGCCAATGCTTTTTTACTCTTCCCTT 2242 29 100.0 32 ............................. GAAACAACTACCGGTTAATTGTGGCAATTGCT 2303 29 100.0 32 ............................. TTACGAATGAGAACCCATTTAGAGGTCGAATC 2364 29 100.0 32 ............................. AGGATATTTAAATATGGTAACTAAAATATATT 2425 29 100.0 32 ............................. CGCAAACACTCGCAGAGCTGCTTGGTATCACA 2486 29 100.0 32 ............................. CGACGAGAAGAGAAAACAGATTTTAACGGCCC 2547 29 100.0 32 ............................. GACATGCAAGCAGACGTCGTGAAAAAACTCAA 2608 29 100.0 32 ............................. CAGATAACGCTCAGATACCACCAAAGCAGGTA 2669 29 96.6 32 ............................C AGGGGGATATGATTATTACATGGATTGATTCA 2730 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATGTAGATAGAGAAGCTACAAAGATTTTAGTGAATATCATGTAAGAACTTCTCTATGCAACAGCGTTAGATTAATACCACTTATCCAACCAATCCAAAACGCTTACTGTAGTAGCTAGCTTCTCCGGTATCAGATACCAACACAATCTGTCCGGAAGGACGATGGTGACGTTTCCTGAAACAGGCTAATGTTTCCTCATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGTTGTCCATCAATGTCTTTTCTGGCGAGGTAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCCCGATCGTAACCGAGATCGTAACGTAATAAATTTTGCGTAGCCACCGAACGTTGGCTAAGGACTTTGCCAAAGGCAACGTCAGAGATCGTCTGCA # Right flank : CTTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCGTGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTACCTTTGGGGGAGGACGGATTGCGTCCCGGATTGGTGCTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //