Array 1 65739-63632 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQO01000018.1 Salmonella enterica subsp. enterica serovar Braenderup strain 104 NODE_18_length_88611_cov_20.1563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65738 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 65677 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 65616 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 65555 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 65493 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 65432 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 65371 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 65310 29 100.0 32 ............................. CTAGGCACTAACTCGCAGTATCACTCCCTGCC 65249 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 65188 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 65127 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 65066 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 65005 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 64944 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 64883 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 64822 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 64760 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 64699 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 64637 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 64576 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 64515 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 64454 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 64393 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 64332 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 64271 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 64210 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 64149 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 64088 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 64027 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 63966 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 63905 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 63844 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 63783 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 63722 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 63661 29 89.7 0 A...........TC............... | A [63634] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83001-81997 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQO01000018.1 Salmonella enterica subsp. enterica serovar Braenderup strain 104 NODE_18_length_88611_cov_20.1563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83000 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 82939 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 82878 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 82817 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 82756 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 82695 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 82634 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 82573 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 82512 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 82451 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 82390 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 82329 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 82268 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 82207 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 82146 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 82085 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 82024 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //