Array 1 841-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDO01000002.1 Salmonella enterica subsp. enterica serovar Muenster strain ARWAIC .SLX_12186.D703_D507.HJ72NBBXX.s_1.r.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 840 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 779 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 718 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 657 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 596 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 535 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 474 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 413 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 352 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 291 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 230 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 169 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 108 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 47 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GCCAACGGTTTCCGTTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1389-385 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDO01000024.1 Salmonella enterica subsp. enterica serovar Muenster strain ARWAIC .SLX_12186.D703_D507.HJ72NBBXX.s_1.r.24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1388 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 1327 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 1266 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 1205 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 1144 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 1083 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 1022 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 961 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 900 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 839 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 778 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 717 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 656 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 595 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 534 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 473 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 412 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGTTCAATGA # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGAAAAAGGCGAGATGACCTATAAACAGGCCCAGCAGCGATATGGCATTCAGGGGCGCTCCACCGTACTTGTCTGGCTGCGTAAATATGGCCGGCTTGACTGGAGACCCGGACTTCCTGACCTGGTGAAGAGGAAACTGCCTGTGGCTCAGACAACTATCCCGCTGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16627-19157 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDO01000008.1 Salmonella enterica subsp. enterica serovar Muenster strain ARWAIC .SLX_12186.D703_D507.HJ72NBBXX.s_1.r.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16627 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 16688 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 16749 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 16810 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 16871 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 16932 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 16993 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 17054 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 17115 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 17176 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 17237 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 17298 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 17360 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 17421 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 17482 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 17543 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 17604 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 17665 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 17726 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 17787 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 17848 29 100.0 32 ............................. GACGATTTTAACGCCGTATCCCGTTCTTATAA 17909 29 100.0 32 ............................. CCGGCCGCGATCGCGTCTTCCAGGGTGATGAC 17970 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 18031 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 18092 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 18153 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 18215 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 18276 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 18337 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 18398 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 18459 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 18520 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 18581 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 18642 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 18703 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 18764 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 18825 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 18886 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 18947 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 19008 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 19069 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 19130 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //