Array 1 240010-238783 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN908249.1 Actinobacillus pleuropneumoniae serovar 8 isolate MIDG2331 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 240009 28 100.0 32 ............................ TGCTTATCCGTGAATGACACAACTCCGCACAT 239949 28 100.0 32 ............................ CAGTGGATTTACTGGAGATTAAGCTAATTCGT 239889 28 100.0 32 ............................ GCCAAGTGCGGGATTTTTACTATAAGGAACAA 239829 28 100.0 32 ............................ GAATTAAGCACAGAAGCACCTACGAACGACTT 239769 28 100.0 32 ............................ GATTGACAGCGACTGGAAACCAGCAGGCGCAA 239709 28 100.0 32 ............................ TGTTTTAGCTGCTCAGCAATCGTCTTTTTCAT 239649 28 100.0 32 ............................ AGACTTCTCAAGTAAAATGACTTTTTCAGCAA 239589 28 100.0 32 ............................ TTTGAGAAAAAGGAGAAAATGAAATCTCAAGC 239529 28 100.0 32 ............................ TACAATTTTACGCACACGCTTAACAATACTTT 239469 28 100.0 32 ............................ TGCCACATTTAACCGCTCTTGCGTGTAGATTT 239409 28 100.0 32 ............................ AAATTGTGCTTATCTTTAACTTCACCGGTTTC 239349 28 100.0 32 ............................ TACGCCTGAACCCTGTCCTTTCCCATTACCGT 239289 28 96.4 32 ...................A........ TTATGCTGATAAAATGATTCTTAAAGAAATAA 239229 28 100.0 32 ............................ CTACGGGTTGGCTACGCCAAACCTTGACAATC 239169 28 100.0 32 ............................ ATATCCACTAATAAAAGTATGGCTTCGCTTTC 239109 28 100.0 32 ............................ TTTTTAAAGGCTTCTAAAATCACTGAAGAAAC 239049 28 100.0 32 ............................ ACACCAAAACTATGCCGGTAATCTTTATTTAA 238989 28 96.4 32 ........................T... ATTCGCCCCGACGATAAATTTCTAACTGCTCC 238929 28 100.0 32 ............................ AATGTTGAAAACACTCGGTTGGTGGGGGAAAA 238869 28 100.0 32 ............................ TCTAGTAAAAGTCCAAGCTGATGACTGACTGC 238809 27 89.3 0 .....................C-.C... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.1 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TAAAAGTGCAATTAACTGCAGAGGGCTTACAAGACTATGCTCTTATTACATCGGTAACCCCTATTCCGGAAGAGATAGCCGAGCATCGCCGTTACCAAAGAGTGCATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGAAATTCTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGTACGTAAAACTCAAGAGTGGTAGCACTAAACAGCATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAGCCTGTTTCCGGCCTATTTAACGCATATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTCTTTTATAACCTTTTTTTCAAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCGCTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTGACATTCTAAAGTAAAATAACGA # Right flank : TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCAATAACTCAAGCGGCAATGCGAGAACTGTCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAGATCGGTTGTGATTTTTTTAGTCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //