Array 1 10140-11263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBJD010000015.1 Phocaeicola dorei strain PtFD16P1 NODE_15_length_121208_cov_26.2444, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 10140 47 97.9 30 ...A........................................... GTGTAAAGGCATGGGAAGACGAGTTAACAC 10217 47 100.0 30 ............................................... TACTATGTGATAGTCTTTCCTTTTCACAAT 10294 47 100.0 30 ............................................... TACTATGTGATAGTCTTTCCTTTTCACAAT 10371 47 100.0 30 ............................................... ATTTTAATGATGATTCATATAAAAACTTTA 10448 47 100.0 30 ............................................... GAGCCGTCTGACCTCCAGCGGTTGTTACTT 10525 47 100.0 30 ............................................... AGGTGTTGCAAAGAAGATTCTCAAAGACAA 10602 47 100.0 30 ............................................... ATCAGCGTGTTAGCTTTCTTTCGCTTCTGC 10679 47 100.0 30 ............................................... ATTTTGTATCCGGTCAAAATCGACCGTGCA 10756 47 100.0 29 ............................................... GGAAAAACATGGGGAGAATGGTTACTTAT 10832 47 100.0 30 ............................................... TTTCTATCCAAGTTCTGAACTGCATAAACC 10909 47 100.0 30 ............................................... CAGAAAGGGAGCCTTGAGCATAAAGATTAG 10986 47 100.0 30 ............................................... CGACTGCCACGCTGCCTATATTGATAGGGA 11063 47 100.0 30 ............................................... GAAGCCTGAGAAGTTATACGGTAACTTACA 11140 47 100.0 30 ............................................... ATCATTCAAAACGTTCCAAGGCCAGAAGTA 11217 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 15 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAATAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : CAGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //