Array 1 1576091-1577397 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOL01000001.1 Salinispora arenicola strain DSM 44819 Ga0264271_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1576091 28 96.4 33 .................A.......... GCTCGCCGCCCGGGTAGGCGATCCGGCGCTGGC 1576152 28 96.4 33 .................A.......... CTACTCATCGATCACGACAATGCGCGGTCGGTG 1576213 28 100.0 33 ............................ CGCGACCAGGTCCCGGGTGTGCGCCTCGACCGG 1576274 28 100.0 33 ............................ TATCTCGAGGTAGTCGTCGACCGAGAGCCTGAT 1576335 28 100.0 33 ............................ CGAGAGGAGTGCCCTGGTCATGGCAGCAAATCG 1576396 28 100.0 33 ............................ CTGTTCGCGGATTCGTTGCTGGATGGCCCGTAT 1576457 28 100.0 33 ............................ CGGGCGGATCGGTGCGAGGGCGGCTCTGAGTCG 1576518 28 100.0 33 ............................ CTGTTCGCGGATTCGTTGCTGGATGGCCCGTAT 1576579 28 100.0 33 ............................ CGGGCGGATCGGTGCGAGGGCGGCTCTGAGTCG 1576640 28 100.0 33 ............................ CGGTGGAGGACGCATTGTGCGCAGCAGAGAAAC 1576701 28 100.0 33 ............................ CGCTCGTGTCGCTAGGTCGGCGACCGCGCCGAC 1576762 28 100.0 33 ............................ GCCCGGCGCGGGTCTGCCCGCCGGCGGCCTCGA 1576823 28 100.0 33 ............................ TGGCGGGCCATTGAATGGCGGGTCATGAAGTGG 1576884 28 100.0 33 ............................ CCCGTAGGACGTGTTCACGAACGGCGTGCAGGC 1576945 28 100.0 34 ............................ CAGGCAGCTGCCAAGATGGTCGGGACTGGCCGCC 1577007 28 100.0 33 ............................ CGTGACACTGGCAAGGCTGCCCAACGCTCCGCC 1577068 28 100.0 33 ............................ GGTGGCTGCCCAACGCCCGCGGATTGCGGATGT 1577129 28 100.0 33 ............................ CGAGAGGGTGGCGTAGTCAGCGACGGGTTTGAA 1577190 28 96.4 33 .............G.............. GCGGAGTTCGCCTGTGTTGGTTGACTAGTGATG 1577251 28 96.4 31 .............G.............. CGACTAAGGCGGGTGCTCGCCGTCTATGACC 1577310 27 89.3 33 ............C.G..-.......... TGTCGTTGGCCCCGCTCGCCAGCAGGGTCTTGC 1577370 28 67.9 0 .......T.......T.C.AA.C..AGA | ========== ====== ====== ====== ============================ ================================== ================== 22 28 97.4 33 CTGTTCCCCGCATACGCGGGGGTGATCC # Left flank : GATGTCCTGGTCGAGCCGGACGGCCCGGTAGATCTGGGCGCGGAGGGCGGCGAGGTCTTGTGCGGTAGCCGGAACGTTCATGGGGTCGGCAAGCCGTCTCGGGTAGGGCGGACGGCTGACCACAGGCGGTCACTTTCGCCACTGGTGCGCCGCGTGCGCCGGGACGTGACCGGCCTCCAGGCCGCACGCGCGGCCCGGCGCTGACGCGGCGGCGGGCCGAAGGCCCGCCCTTGACCAAGTAAAGAAACTCTGAACACACGCTCCAGTCATGCTGTGTCCGACTCCGGTTGATGCGTTACAACCACATGTCCCGGCTTCAGGACGTGATTGTCAAGATCGGTTAGGTAGTGGTCCTCGGACGGCAATCATGGCCGTCCGTTGAGGACGGCTGGCTATGCTGGACGTAGCCTTTGCGCCCTTGACAAGCCGCAAGACTGATCTTGGCGGTCGTAGTGAACGAAAACAGCATAGTTGATCTTTAGAGCCGCAGGTCAGGAAGC # Right flank : ATCGCCTAGCCGGATTTGTTGCGGATCGAATTGCAGTGATCCTTAACAAATCCGCCGTTGCGTCCGAGTCACTGCAATCCAGCCTAAGGAAAACTAGAGATCGTCCACCGGGACGTATCACGCAAGTCGCGTGAAGCGTTCGTGGATCTGACGGGCGGCCTTGCCCGGACTGACGCTTCCGGTGTCGACCGCAAAATCCGCGTCCACCAGTGGAGGCGTTTCATCCCATGCGCGTAGCCGGGCTTCGGTGTCACCGGTTGATCGCGCGTCAATGCGCTCCCGAGCAACAGTACGGTTGCAGTGAAGGTAGACAGTGAGCCAGTGTGCTGCTGAAACGGACGACCTGACGGTCTGAACGGCTTCGATTTGGCCAAGATGAAGAACGGGTATATGCCCCTTGAGGTCTGCTTCGAGTTTGGCCCGATCGACAACATAAAGGGCTCCATACCGCCGGTTCTCCCACACGACATCACCTGAGCTCCGTATCTGCTCAAGATCTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2096065-2098476 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOL01000001.1 Salinispora arenicola strain DSM 44819 Ga0264271_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2096065 37 97.3 39 .......G............................. GCACCGGTGGGCCCTGTAGCCGTTCCTCGATCCGGTGGT 2096141 37 100.0 36 ..................................... CGGTTCGGCGTCTACACCCCCGCGATACGCCGCTGG 2096214 37 100.0 37 ..................................... CCAGCCGCGGGGACCGGGGCAGGATGACCCGACGGGA 2096288 37 100.0 38 ..................................... CATCAACGCCGTGCTCGCCAACAACGAGGTCATGCGCG 2096363 37 100.0 37 ..................................... CTGCCTGTAGGCCGGCAGAGGTGCAGTCCACCCCGGC 2096437 37 100.0 36 ..................................... GGACGTGTGGGCCACGATGTCGGCCAGATCCGACGC 2096510 37 100.0 39 ..................................... GGGCTCATCCGCTATCTGTATGGGCCCGGCCGTCGGGAG 2096586 37 100.0 35 ..................................... TCGTGTCTGGGGTCAAGCGTGGCCCTGTTGGGCCA 2096658 37 100.0 37 ..................................... CATCGCGCCGGCTCGGTGCCATGGGCAAGGCTCTCGT 2096732 37 100.0 37 ..................................... GATCACCGCCGTGTGGGGATGGCCCGCGGTCCCCGAC 2096806 37 97.3 39 ..................................C.. CTCGGGGTCAAGCTGCACAGCGTCGGCCAGATGTTGAGC 2096882 37 100.0 37 ..................................... CCACCCCGATACGCCAGATGTCGACATTCGTGGGGGT 2096956 37 100.0 37 ..................................... GCAGTTAGCTCGTCGATAGCAACATCGCCGATTGCTG 2097030 37 100.0 39 ..................................... CCGCCCGAAGCTCCTGCACACCAAACAGCCGCCCCCCAA 2097106 37 97.3 39 ..................................G.. GGGACTCGTCAGAGTCTAACCGGCCACGTCCGGTGGGCG 2097182 37 100.0 38 ..................................... CCACGTGGCGGGCCGTGGTGGCGGTGCCAGTCGGCGAC 2097257 37 100.0 38 ..................................... GCGGCCGGTATCACCGAGCACCTGAGGGAGTTGACCGT 2097332 37 100.0 36 ..................................... TACTCAGACGCCGATGCCGATGGCGCCGGCAATCGA 2097405 37 100.0 35 ..................................... CTCGGGCGGACTACGCCTACACCCTCGACGTCATC 2097477 37 100.0 36 ..................................... GTCGATCTCCGGTTCGAGGGCGAACGGGTCACCGAC 2097550 37 100.0 38 ..................................... GACGGCCGGCTCCCCTCTCCTACGCCGCCCTTCCCCCA 2097625 37 100.0 36 ..................................... CGACAAACACAAAGACGAGCCTCCGGCCGCATTCAT 2097698 37 100.0 36 ..................................... CCCTCTCCGGTGAGCCCCAACCAGCCTGGCAAGCAA 2097771 37 100.0 38 ..................................... GGTGGTGCAGGTTCCCCGGAACCGTGCGTGATCTGCGG 2097846 37 100.0 37 ..................................... CACCGAACACCTGGATGGTCCCCGCGTGCTGACCCTG 2097920 37 100.0 37 ..................................... TCTGCGTGATGACGACGACAGCCACGCCGTCAATCCC 2097994 37 100.0 37 ..................................... GAACCGGGGTGGCCTGTCCGGGTGGGACAGCCTCAGC 2098068 37 100.0 37 ..................................... GCAGCCCGGCTTCGGACTGACCCCGTACGAATGGGTC 2098142 37 100.0 39 ..................................... CCCGAAACAGCCCATCAGGTACTCATCGACTTGAACGGT 2098218 37 100.0 38 ..................................... CCTTGACTGACCAGGTGAGGGACGGACTCCCTACCGTC 2098293 37 100.0 37 ..................................... GGTAGACCAGGAAGCCCAGCCCGGAGAAGCCAGCGAA 2098367 37 100.0 36 ..................................... CCCGTTGGCATGAGCTGATCGGCACCGCTTTCCGGG 2098440 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 33 37 99.8 37 GCCGCAACGGAGACCGACCGCGTTGGGTCGGTGAAGG # Left flank : ACCCGGCCACCGGAGCCGTCTACCGTATACCAAGAGTCGTTGACCGGCGGTCTATACCTTGACCGTCCGGGCGAGGTTGCAGCGTATACCGATGCCTGGTCTACCCTCTGGGCATCGGCGCTTGACGAGCAAGCGTCAGAGGATCTGATCAGCAATGCGGTTAAGGGAGAGTTACGATGAGTGATCTTTCGCGGCCCCTCTGGCGCAAGAGCAGCCGAAGCGGCAACGAGGGTAACTGTGTAGAGGTCGCCGACAACCTTCCCGGCGTCGTCGGCGTCCGTGACAGCAAGGACCCGACTGGGTCGGCACTGGTGTTCGGGCCGGCGGCGTGGCGCGCGTTCGTCGCGCAGTTCCCCGAGCAGCACTGACCGTCATAGCAAAGGCCCGGCTCACAGGGAGCTGGGCCTTTGCTATGAGCTACCCGCGGACGCCCTCGCACGAGAGCCCAGAGCCCGCAGGTGAAGATCACCATCATCTGCCATAGGCCCTTGGCCAGCGGC # Right flank : GGGCTCGGGAGCAGCGCTTATAGCTGGCGGTGGTGGGCAAGGTGGTCTAGGCCTTGTCTGTATTGCCCGCTTGACGCGCCTTTTGGAGTTCGGAACCTCCCGCGTGTCGGGTGTCCACCGGGGGTTCCTAGGCCAACTGAGTGGCAGCCCGAATGGCGTGAATGTGTGCAGTTATCAAGGTTCAAGCTGTAGGCGGAGCTTGGCTGCTCTACGAGTTGGTGAGGGTGACCGGTAGGGGAACGAGGACGCCGGCTGATTTGCGTCCCTCAACTGGCCGACGGTGAGCTGCGGCGACGGCGAAGACTCCGAGGGCGGAGATTTTGTCTTTGGACACTGTGACGTGGCTGCCGTCGCTGTCGAAGGTCAGGTCTGGGTGTTCGATCAGGGCGCTGATGGCGATGAGATCGAGGGGTTGGCGCCATAGCGGCCAGATCATGATGCGTCGTCCGCCGGATTTCGGCGGCCGCCAGAGGGTGGCGGTTGCGGTGTTGCCGTTGCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAACGGAGACCGACCGCGTTGGGTCGGTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 3 3035428-3036187 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOL01000001.1 Salinispora arenicola strain DSM 44819 Ga0264271_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3035428 28 100.0 33 ............................ CTCGACCCCGGCGTTCAGCTCATCGCGGTACTC 3035489 28 100.0 33 ............................ GATCTCGGGCTCCTACCTGTGGTACCTGCGCAA 3035550 28 100.0 33 ............................ CTCGTCCTCAACGCTCGCCGGCAGCGGTACGGC 3035611 28 100.0 33 ............................ CAGATCGGCCGTGCCCGCGTACCGCCACCGCCG 3035672 28 100.0 33 ............................ CCGGGTGCGGTAGTTCGCCGCCTCGGCCCGAGT 3035733 28 100.0 33 ............................ CGCCACTCCAGGCCCGGACTCGGGTCCGAAGCC 3035794 28 100.0 33 ............................ CTGTGCCTCCACGGCCGCGATCTCGGCTCGGAC 3035855 28 100.0 33 ............................ CGTGTAGCCACACATGAGGCATTCGCGAATTCG 3035916 28 100.0 33 ............................ CTAATTGGGCGTAACTCGTGGTCCGAGGCGTAC 3035977 28 100.0 33 ............................ GCGGGCGGAGGGTGCCGCCGGGGTGGAGCGCAC 3036038 28 96.4 33 ..........T................. CCACGTCCTGACCATGGCGTGGTCGAGGCCGGT 3036099 28 100.0 33 ............................ CGACGTGAGGATCGACAGCACTGCGGCCAGAGC 3036160 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 33 CTGTTCCCCGCACGTGCGGGGGTGATCC # Left flank : TCGCTTCTGCCCCGGGGTGACAAGGTGGAGCGCCCCACGGACGAACGACCTTGGCGCCCCGGGGCAGAAGCGATACACCGAAGGCGTCAGCACGACCGACGAGACCAGGAGGACCCGGGCCGGCAAGCCGTATCCGGCAGGGCGGACGGCCGGCCACAGGCGGTCACTCTCGCCACTGGTGCGCCGCGTGCGCCGGGACGTGACCGGCCGCCAGGCCGCACGCGCGGCCCGGCGCTGACGCGGCGGCGGGCCGAAGGCCCGCCCTTGACCAAGTAAAGAAACTCTGAACACACACGCTTCAACCACGTGTCCGACCTCAGAACGTGACAATCAAAGATCAGCTACGGCTGTGGCCTCAGCGCGACAGTCATGGTTCGTCGTCCCTTGAGGAGGTCGCTATGCTGCACCCAGTCTTTGCGCGCCAAGGCGCGAGATTGATCTTGCCGGTTGTAGTGAATGAAAACACCATAGTTGATCTTTAGAGCCGCAGGTCAGGAAGC # Right flank : CCGTCGACCAGGAGTCCAACCGGGAGGGAACCCCTGTTCCCCGCACACGTTATCGCATGGTACTACCTATATTGAAAATCAAAACCAACTATGCGAGAATCGCGCAGTGAAAACGTTGGCATTGACGACTGAGCGTCGTAATGAGTTAGCAGCGCTGCTGGATGATGAGCGACGGCTTCGGGCCGAATACCCAAAGGTAGCGGAGTACATGGTTACGTCGCCTATGCTGCCGGGCACAGACGACGCTCAGGCGGACGCAGAATTTGAATTGCGACTTCTCCACTATATGACTAGCTCCAAGGAGCGAGTTCAAAATCCGTATTGGGAAATACTTGCACCTTCGGTATTCGAGCATGATGGACGCCGTGTTGTCAACGGTGGAAGTCTAACCGGGAGTGGCAGGCTTGCCTATGCGGAGACGTTTCTTCAAGCAGCCTACGCATATGCTATACCATCTCCCGAGACGCTCGAATGGATAGCAGGGTTTTGTGCTGATAGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACGTGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 4696763-4698624 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOL01000001.1 Salinispora arenicola strain DSM 44819 Ga0264271_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4696763 28 100.0 33 ............................ CAACGTCTGCATTGCACACTGACGCTGCGGCAC 4696824 28 100.0 33 ............................ CTTTCATTTCCGAACCTTCCCGTCGCACTTCAC 4696885 28 100.0 33 ............................ GGCTGGCCCTCTAGACCTTGCGACACCGTCCGG 4696946 28 100.0 33 ............................ CGTTACTCTGTGCAAGGTCGCCAACAAGTCGAC 4697007 28 100.0 33 ............................ CGTGCTCGATCACGCGTCGGCCGAGGCGCACTC 4697068 28 100.0 33 ............................ GTCCCTCCGATGCGAGTAATGATCACCGGTTCT 4697129 28 100.0 33 ............................ GAGGTGCCCGCTATGGCCACCCGCCCCGGCGCC 4697190 28 100.0 34 ............................ TGATGCGGACGGGAACCACGTACCGCCCTCGAAC 4697252 28 100.0 33 ............................ CAGATGACAGTGCTCGCCGAGCTGGCACGCATA 4697313 28 100.0 34 ............................ CGAGCGGGTGCTCGACATCGAACGGGCCGTAGAG 4697375 28 100.0 33 ............................ CAGGATGCGGGCGAGTAGGCCTTTGCCTCGGAA 4697436 28 100.0 33 ............................ TGACCGCCGCGAACGGCCTCACGGAACTGGCTG 4697497 28 100.0 34 ............................ CTGCACACCGCGCTCGACGAGCCAGTCCAGGCGC 4697559 28 100.0 33 ............................ CGCCGTCCTACCCGGCATCCGCACCCTGTCCAC 4697620 28 100.0 33 ............................ CGCGGTGCTGACTGCGGCGGCGGCTTGATCGTT 4697681 28 100.0 34 ............................ CCTGGCGGGCATCGTCGACACCGGGCTCCGCGCC 4697743 28 100.0 33 ............................ AGCAGATGCCCCGTGACGTGGACCGGGCCCTGG 4697804 28 100.0 34 ............................ TCAGCAACACCCGACGCCCTGGAGGAAACGTGGC 4697866 28 100.0 33 ............................ CTCATCCACAGTGGCCCAGACGTGTGCCGCGGC 4697927 28 100.0 33 ............................ CGGCAACCCCCGCCTCAACGCGGCATTCGTCGA 4697988 28 100.0 33 ............................ CATGTTCGGCGGGTGGCACAACGTCACCGGCTG 4698049 27 96.4 33 .....................-...... CCTCTACCGGCTCAATCTGCCACTACTGGAGGA 4698109 28 100.0 33 ............................ CGCGACGAAGGCCAGCACCAGCCAGCCAAGAAT 4698170 28 100.0 33 ............................ CACACCGAGCCACACATCCACCCCACCACCGAC 4698231 27 96.4 34 .....................-...... TGAGGGCACCGACATGCCGTCTCTTACCGATTCC 4698292 28 100.0 33 ............................ CGGGCCCCACCGCGAGCACGACCGCCCCGGCGA 4698353 28 96.4 34 .....................T...... ACGCAGCGTCGGTCGGATCTTCGCCCGGGTCGAC 4698415 28 100.0 33 ............................ CCTCTCCCCCCGCCGGTAGCGACCGAGCGGCCG 4698476 28 100.0 33 ............................ CAACCTCACCACGCCGCCGCTCGACGGCCCGAA 4698537 27 96.4 33 .....-...................... CAGGAAGCCCGCTACCTGGTGTGGCTGGCACGC 4698597 28 96.4 0 ........................C... | ========== ====== ====== ====== ============================ ================================== ================== 31 28 99.4 33 CTGTTCCCCGCGCAGGCGGGGGTGATCC # Left flank : AGCGCCGTTTGCAGCACATCCGTCGCCTTGGGCCCGTTGACAAGCAAACTCATCAACGCCCGCGACGAGAGGTGGACGGTCATCGGTTCAGCCCCTTCTGCAGTGCATCCGTGCACAGATCATTGTCGTCCAGTGTGGATGAAGTCGTTGAGGCCGACCCGTGGATAGCCGCGACAGCTGCAACTCACCTGCAGTTCGGCCAGCCGCTGCATGGTCGACCGTTGCGATGACCACTCGAATCCGCTCCCCGGAACCCCGGCGGACAGAGGCTCAAGGTTGAGCTGTCATTGATACAGTGGACTGCCAACCGCCAGCCGTCCGTTGCCAGCGATGTTCTGCCGGCCTCCACAGCTCTGCCAGCCACTCGGCTTGGGCCTCACTAACTATGCTGCAGCCGAGAACGCTAGCCTGCCATGTCAACTGCTACGGGAAGGACGATCTTGCGGGCCCTAGTGAATGAAATCCGGAAGATTGATCTCTAGCGTCGCAGGTGAAGAAGT # Right flank : CCGCGTCGACACCGTTCGGGATCATGGCTGGGGTTGAGGTTGAGACGGCGTGTGTAGTGGGCTCGTCGGGTTCGGGCGTGATGGCGGCGTCGCCATCCTGACCAGTGCAGACGGTGGGCCCGTCGGCAGCATCCATACGGTCACCGCATCGACCGGTGTGGCGTCGACGCGTCCTGTGGGGGCGCGAGTTGGGTCTGCCGCGGTACATCCCGTCCAGACCGAGGCGGACGCGTGGTTCGCGACCAGGCCGTCGTGCGGACACACCTGGCCACCCGAGATCGAACCGAGCTGCGCCTGTCTGCGCTGCGGCCGGCACTACGACGAGTACGCCGAATAGGTCCACACGTAGCGAACAGCCGAGCATTCGACCCGGTGGGCTTCCGGATACGGTCCGGCCACCCGTGAAGCGCAGGGGCCGCGCAGTCGATGTCCAATGCGTCGAGCCGCGCGGCTTCGGTGACCGCGCGGCCCTGCTCGATCGACGCCGGGGCCAGGGCCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 4861847-4858284 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOL01000001.1 Salinispora arenicola strain DSM 44819 Ga0264271_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4861846 29 100.0 32 ............................. AGGCACTGTCGCCAGCCCTGCCGCATAACTGT 4861785 29 100.0 32 ............................. GCAACAGCGCCTCGGCTGCGGCTTTGGGCTCA 4861724 29 100.0 32 ............................. GCTCCTCAGCGAACACCAAGACCGTACGCACG 4861663 29 96.6 33 ............................G ACACGATCACCACGGCACTTCACAGTCTTGACA 4861601 29 100.0 31 ............................. GGCCACCGGCCGGTGGGGATGCCGGGTGATT 4861541 29 96.6 32 ............................T TCGACCGGGTGCCGGAGACGTTGCGGATCTGC 4861480 29 96.6 32 ............................G ATCATCGCGTCGTCGATCTACTGGCGTCAGGA 4861419 29 100.0 32 ............................. ATCGGGATCGCGGTCGGCCCATCCGGTCTGAT 4861358 29 100.0 32 ............................. TCATCCACAGTGGCCCAGACGTGTGCCCAGGA 4861297 29 96.6 32 ............................A TGGCCACGCGCCTCAGCCAAGCACCGCAAGGA 4861236 29 100.0 32 ............................. CCGGCTGACCTGGCGATCATTGTTGGTGTCTC 4861175 29 96.6 32 ............................G GCCAGAACGCCACGCTGGTGTATCGGCCGGAA 4861114 29 96.6 32 ............................G TTGCGTTCCGTGGGCCCGACCTACCCTCGCCG 4861053 29 100.0 32 ............................. GGCTGGAGAGGTCCGGCATCTCAGTCGAGGGC 4860992 29 100.0 32 ............................. CTACGTGTTGCGGGGAGGACGTGTTGCTCTCG 4860931 29 96.6 32 ............................G TCCGCAGGATCCGTCGTCCACGGGCGATTCGC 4860870 29 100.0 32 ............................. GTCAGCGTGACCTGATTCGCCATGTCAGCTGA 4860809 29 96.6 32 ............................G TGGGCATCGTCGCGCTTGTAGCCGTCATCGTG 4860748 29 100.0 32 ............................. GTCAGGTATGAGACGGGGTTCCTGACGAGGTC 4860687 28 96.6 32 .................-........... GGTCCGCCGCTGGGTGGCGGGCAGTCAGCGGC 4860627 29 96.6 34 ............................G GTCGCCCCCCCCACAGGTCCAGGGCCACACCGAA 4860564 29 100.0 32 ............................. GGGTCGTCTTGGCACCAGTCGATGCAGCGGGT 4860503 29 96.6 32 ............................G TGGTGCCCGTTCCACCGGCCTAGTCAACCCAC 4860442 29 96.6 32 ............................T GTGCAGGAGGTTATCGGCAGTGACCAGTAGGA 4860381 29 96.6 32 ............................G TCATCGAGTACACCGCGTTCGCCGAATACATG 4860320 29 96.6 32 ............................G CCGGACCCCGAGCCGGAGCCACATTAGGCCAC 4860259 29 100.0 32 ............................. AGATCAGGCGCCGCTTTCGCCCCTGCTGCGTT 4860198 29 100.0 32 ............................. CACCAGCCGTACCTGCCACCAGCGAGGCGACA 4860137 29 100.0 32 ............................. AGCTCCCGCCACGCCTCACGCGCGTCGCGGCG 4860076 29 96.6 32 ............................G GTTCCCCGGTGGGGCGTGGTAGCCGTGGCTCC 4860015 29 96.6 32 ............................G TGAGCGTTGACCTGCACTATCTGGATGGCCTT 4859954 29 96.6 33 ............................G CTGACCGAGGGCTATCGAGGCGAAGTACAGGGC 4859892 29 96.6 32 ............................G TCCCCCTAACGCGTCTTCTTCGCCGCCGCCGC 4859831 29 96.6 32 ............................G GCCGCCACCCGCTCGGGGGTCCACTCGGCCTC 4859770 29 100.0 32 ............................. CAGATGCCGTCACGCAGGTGGAGGGCGACACC 4859709 29 100.0 32 ............................. ACCCCGCACCCTGGCCACCGCGATACAGCAGC 4859648 29 96.6 32 ............................T CTGTTGGGGCGGGAAACCGTCTCCGGCGCGGC 4859587 29 100.0 32 ............................. ACGATGTCCTCCGGCCGCTTGACCAGGCCGGT 4859526 29 93.1 32 ......................C.....G TCCATCGGAAAGTCCGCGGGATCTGTCGTCCA 4859465 29 100.0 32 ............................. TACACGGCCTACGTCGCTAAGTTCGGCGAGCC 4859404 29 93.1 32 ......G.....................G CCGCGTACGCGGCCGGGCGGGTGCCCTTACTT 4859343 29 100.0 30 ............................. CCGAGCGGGCATGGCCTGCCAGGACGCCGT 4859284 29 96.6 32 ..................C.......... TCCACCGAGATGCCGGGCAGGCTGCGCTGCAC 4859223 29 100.0 32 ............................. TCGACGCCGCCACCCGCGCCCTGGCCGCCGCC 4859162 29 100.0 32 ............................. TCAAGCCGTGGACGCAACTGGGCATCCCCGAA 4859101 29 100.0 32 ............................. TGACGCAGCAGCCCAGGCATGGCCTGGCGCAC 4859040 29 96.6 32 ............................A CAACATGTCAGGGATTGCCGTGGTCACTGGCC 4858979 29 100.0 32 ............................. GTGTCCGCTCCGCGTTGCACTGGTCCAGGCGC 4858918 29 96.6 32 ............................G TGATCTGTACCTTCACGGTCCGGTGCTGACCC 4858857 29 93.1 29 ...........................GT CCCGACCCGGCGCCCGGTCCCGGCCGGTC 4858799 29 96.6 32 ............................A ACCTGGCCCGGAGTACCGGTGCTGCGCGGTGT 4858738 29 96.6 32 ............................G ATCTACCCTACGGGGCTATGGGGAGGATTACT 4858677 29 100.0 32 ............................. TCATCGCCGGCTCCGGCATCGTCGTCACCGAC 4858616 29 100.0 32 ............................. GCCTCACGTTCTTGCAGCCGCGCCAACAGCAG 4858555 29 96.6 32 ............................G CGGAGGCGGCGCGGGAGATCTTGGCGGCCCGT 4858494 29 100.0 31 ............................. CGCGACGCAGTCACGTCTTCCGGACGTGCCG 4858434 29 96.6 32 ............................T CGGACGGAACCGAATGACGTGGTGTAGCCCTC 4858373 29 96.6 32 ......A...................... GCATCACCGAACGTAAATTTAACGAGTATGAG 4858312 29 89.7 0 .......................A..TT. | ========== ====== ====== ====== ============================= ================================== ================== 59 29 97.9 32 CTCGTCCCCGCACGCGCGGGGGTCTTCCC # Left flank : ACCCGGATCGTTCGCGACATCAAGAGCCTGCTACTCGAAGACGGCCACGCGTTCACCGACGAAGACCTCCACGAACTGTGGGACGACGAACTCGGCAACGTGCCCGGCGGCATCAACTGGGCCTCCGACTGCGCCGACAGCCTCAATGAACAAGCCTTCATCGCAGTCAGTGGACCACCAGTCGATGACGAAAAGGTGGACTTTTGACCGTTATCGTCCTTATCGCCACCCAGCAAGGTCTACGCGGCCACCTCACCCGATGGATGATCGAAGTCGCCGCCGGTGTCTTCGTTGGGAACCCCAGCGCTCGCGTCCGCGACCGCCTCTGGAACCTCCTCATCGACCGCGTCAGCGACGGGCAAGCCATCATGGCCGAGCCAGCACAAAACGAACAAGGTTGGGCCATCCGCACCACCGGCAGAGACCGATGGCACCCCGTCGACCTCGACGGACTAATCCTGACAGCCCGAAACCGTCGCTAAAACCCCAGGTCAACAAGC # Right flank : CCATGTCCAGGGCGATACTCATCCCGAGTGCGGTCTCGTGGTCGGCTCCGCCTGAAAAATGACCCCGTGGTTCCGGGCGGATTCAAGCAGTCGTCGCAACGGTGACGATCGTCAGGGTGCCAGTGCGGTATGGAAGACGTCGGCCGGGGTGCGCCAGTTGAGGGTCTTGCGGGGCCGGTTGTTGAGGCGTTGCTCGACGGCGTGGAGATCGGCTGCGGTGTGCTGCGATAGATCCGTGCACTTGGGGAAGGGCGGGTTTAACCGGTCGTCGCAGCACGGCGCTGGTAGGTCGTCTCATGACCAATGCGCATCAGTCATCGTCCGGGAGGACTCTGCATGAGCCAGCGGGAGACTTTGCTCTGGCCTCTCCCCGGTCGTCCATGCTCGATGACCACGCCACGGCTTGCGGGCTCTGTTCGTGGCGACGGACATCTCGGTGGCGGGGGTGGGCGTGGTGGAAACCCTGATGGTTGGTCTGCCGGCCCCCGTTTACCCCCCGA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCACGCGCGGGGGTCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4871814-4873795 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOL01000001.1 Salinispora arenicola strain DSM 44819 Ga0264271_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4871814 29 100.0 32 ............................. TCTGAGGAGACGATCTTGCTAAAGGTTGCGCT 4871875 29 100.0 32 ............................. CGGATACCGACGACCAGCCCGGTTTGCCTGCC 4871936 29 100.0 32 ............................. ATGATCGCTCGGTTAGGCGGCTGCCGTCAACT 4871997 29 96.6 32 ............................T CCTATCGGTCTGGTCATTGCTGCGATTGTTGC 4872058 29 96.6 32 ............................G TCGCCTGCACGGTGTCGCGCGGCGTCCGGGGC 4872119 29 100.0 32 ............................. GGACATGTCCGGGTCGTACGCGAACGTGTCCT 4872180 29 100.0 32 ............................. CTTCGCATCGGAGACACCATCCGACCCGGCTT 4872241 29 96.6 32 ............................G GTTTACACCGCCGACGCCGACGGCGGCGGGCC 4872302 29 96.6 32 ............................G TCCCACCAACTGCCGCCGTGCGGCCACCTCCC 4872363 29 96.6 32 ............................G TCAACGCTGGTCACATCAGCTCCTCGCGATCG 4872424 29 100.0 32 ............................. TGGAGGCCGACAACGCACGCCTGCGTGAGCAG 4872485 29 100.0 32 ............................. GGCTGGGCTTCGCGGACTGCCTCGATGCGCCG 4872546 29 96.6 32 ............................T GCCTGCCGGGGGGTGTCGACCGTGACGGTTTG 4872607 29 100.0 32 ............................. CTTTTTGAGAGCTTTATGAGGGTTCGTGCAAG 4872668 28 96.6 32 .................-........... GCCGTCGAGGTGGAGCACGTGTGGGTTCGTCC 4872728 29 96.6 32 ............................G CCGCCGAGGGTGACGAGAACACAGCCGAGGCG 4872789 29 100.0 32 ............................. GGGGCGACCGTCTCGGCTGCGGTGCGGCGGCG 4872850 29 96.6 32 ............................T GGAGGTGGGAAACGACAGAACGCAATGGATGG 4872911 29 96.6 32 ............................T TCGCGACCGACACGTTCACGCTTGGGACGACT 4872972 29 93.1 32 .......T....................T GCTGACGTAGTCCTTCAGTCTCGCGCGTGTGA 4873033 29 93.1 32 ..................A.........A ACGTCACGCCAAGCGCGAGATTCACGACATCC 4873094 29 96.6 33 .............A............... AGACCGGTCAGTCGCGACCGATCGATTGATGGG 4873156 29 96.6 32 ............................G ATATAGGCTCTCCCGGTTTTCGATCAGGGGCG 4873217 29 100.0 32 ............................. GCGTCGATTACCTTTGCCCCCATTTTGCACCC 4873278 29 100.0 32 ............................. TCGTTCGCCGCCTCACGGCTGACCCGGTCCTC 4873339 29 96.6 32 ............................G CGCGAATGACTGATCTGTTGTTCGGGCAGCGG 4873400 29 96.6 32 ............................T CCAGGGGCTGATGGGGCCCGGATGGGCAGTCC 4873461 29 100.0 32 ............................. GAGCGGGCTGTGGCGATCGCCATCGCGGCTCA 4873522 29 100.0 32 ............................. CAACATGCTCCGCGATTGTGGCCACGGACGGC 4873583 29 100.0 32 ............................. TGACCAAACTGCCTGACGGTGTACGGGCACAC 4873644 29 96.6 32 ............................G CTGACCCCGGGCCGGGCACGTTCCCCGGAGTC 4873705 29 93.1 33 ......T.....................T GCGCGCTGAGTACGCAGAAGGCGAGTACGTGTA 4873767 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 33 29 97.7 32 CTCGTCCCCGCACGCGCGGGGGTCTTCCC # Left flank : GCACTGAAAAGCAGGTGTCGCCTTTCCGACATCGTGAAAGCCACACAGCAAAGCCAGAAACGCCCTCCCCCGACCGCCCGTACAACCATCAAGCCTGTCCCGTACCGACGGTGCGAGATAGTGATCCCACAGGCACTCACCCACCGCCGCCGCATCAAACAGATGCTGGAGTAGCAGGTTCATGCTGCCTTCGGCACTGGACTTACCCCAGAAAACCCCGAGAGCGGGATGGCTCGCCAAACTCACCCATCAGACGCTAGCGACCACCCCCGACACTCCGCATCGACCAGCAACCGACAACCGCCTTCAACCGCCCGCAGCTGATGGGCGTCCTCGGCGCCGCAACCTCGGCGGCCGGCTCGCCGGGCCAGCCGACTCCTGACGGCCACCTACCTCCCGAAAGGTAGCCAGCCACAGCCCCCACGAATCGGTGTCCGCCAGCTACGATCGAACCGATCTAAAATCACCAAGAGCGCCAACAAAGTCGCAGGTCATCAAGC # Right flank : TAGTGTCCTGCGCCGGGAATTCGTTGAAGATATGAGGCGAGCCGGTCGAGGATCTCGTCGGCGGTCTTGGTCCAGATGAACGGTTTGGGGTCGTCGTTCCATGCTGCGGTCCAGGCGCGTAGGTCGTTCTCCAGGGCCCGTAGGGAGGTGTGCGTGGCGCGGCGCAGTCGCGTGTCGGTCAGCAGCCCGAACCACCGTTCGACCTGGTTGAGCCAGGACGAGTAGGTGGGGGTGAAGTGCATGTGGAACCGGGGATGCGCGGCGAGCCAGCGCTTCACGGTGGGGTGTTTGCGGGTGCTGTAGTTGTCGCAGATCAGATGTACGTCGAGGTCGGCGGGGACTTCGTTGTCCAGCTCGGCCAGGAACTTCTTGAATTCCACAGCCCGGTGTCGGCGATGCACTGAGGTGATCACCTGGCCGGTGGCCACGTCGAGCGCGGCGAACAGGGTGGTGATGCCGTGCCGGACGTAGTCGTGGGTGCGCCGCTCGGGTAGGCCGGG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCACGCGCGGGGGTCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //