Array 1 207460-207297 **** Predicted by CRISPRDetect 2.4 *** >NC_014721.1 Caldicellulosiruptor kristjanssonii I77R1B, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 207459 30 100.0 37 .............................. AGCACATTCTTTTCTGGTGGCTTATAACCTGCCCTGT 207392 30 100.0 36 .............................. CTACCAAAATCAACATAGTAAAATTTCTTTCCTTCA 207326 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 37 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : TGGAAAATACTTAACATAGTTTTTCCCAATCAATATCCCACTTTTTAAAAGCCAATATCCGTTTTTGTTGTTTTGAATCAAGCTATTTAATAGCCTGCTATAAAGCATCATGTAACTCATCTTTATCATCCACACATACAAAAGGTTTTATATTCTTTATAATTCTATTAGGTTTTTAAGTCAAGCACATTTACAGTGCTTTTACTACTCATAAATATGCAGAGTTTTAGAATTTAATTGCATAAATTATCATTTTGACTAAAAGTCATATCCGTCGACCTCAGGTGCAAATTTTTAAGAAGCTTATTTGTATTCGATTTCAAGTTTGCAGGATGTGGGTTTGAATGTATTTCTGGCAGCAACTGGATAGACGAAAAGGCTTGAAAGGCTTTTCCTATTTGATGTAGCTGGGTTTGTGTTGATATTGAGGTGATGTATTAATATAAAAACATTGACAGTGGTGCATAAAGTTGATATAATAAAATCAAGCTTTTCAACCT # Right flank : TTTGATATATTTTTGTTATAATTAGGTAATGACAAAGGTAGTTGGGTTAGGTTGAAATAAAAGAAAAAATAAAATGGAGGATTAGAAATGAGAGTTTGGACAAGAAGGGAAGACGTTGATAAAACTTTAAAAACTATCGCTTATTATTATGACAAATTAAAAGTTCCTAATCTTCAACTTATAAAAAACACAAAGGAGATACTTGCTAAATCAAACAGAAAAGGTTTAGTTCAGTATTTTTGAGAGCAACTTCCTAAATATATTGTTCATGATGAAATATTAAAAGATATTGTCCAAAAATTAAATAGTGAAGATGATGATTTGTAGCCCCCTGTGGAGATAGAAACTTAATTTTCTTTGCATTTTTTAATATAAATGCCATTTTCGTTTGTAGCTTCCCCTTTGGGGATTGGGAAGAAGGGAACCACCCCTGTAGTGATTGGAAAAAAAGGGATTTGTAGCCTCTCTGCTTGGAACAGAAAGCAAAGGGGTGTTGTGGT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 2 2506689-2496984 **** Predicted by CRISPRDetect 2.4 *** >NC_014721.1 Caldicellulosiruptor kristjanssonii I77R1B, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 2506688 28 100.0 38 ............................ GTGATTTCCCCTGTCCATATCGACCTTGAGTTTTACCT 2506622 28 100.0 39 ............................ GTGTCTTTGATGTATTTGTTGAGTTCACCAATCAAGCGA 2506555 28 100.0 37 ............................ GAAGATAGAATAATTGATATTAAGGACATCATAGAAA 2506490 28 100.0 38 ............................ GGCAACAAAACAGTTTATAGTTCAAGCAGGATTGGCAA 2506424 28 100.0 38 ............................ GTTGGAATTTTAACTCTTATCAAGGATACAGGTAGTCC 2506358 28 100.0 37 ............................ GAGAGGATTTGGTGCTTTCAAAAGGGATTGCAAAAAT 2506293 28 100.0 37 ............................ GTTTTACTTGCCACTATCAATTCAGCACACCTCCTTT 2506228 28 100.0 36 ............................ GAACAATGTCCTTGTAAATACAGCTACCAGATTAAA 2506164 28 100.0 38 ............................ GAAAATAGAAACAAAGCCTATATCAACGCAAAAATCTA 2506098 28 100.0 36 ............................ GTTGTTGGTGTTTCTTGAGTTTGAAGATTAATAGGT 2506034 28 100.0 37 ............................ GACGTGCAGGTCTGATACAGGATAAATTTCAAGTGTT 2505969 28 100.0 40 ............................ GGTTGCGACGCCAAAACACTACAGGTTTTTCGTCTCGTTT 2505901 28 100.0 38 ............................ GGCAAATGAAAAGACTGCTTGAGAATATGTTATTCCAT 2505835 28 100.0 38 ............................ GTAAAAAAAGCGTGCTCATTTTTTATTTTTGTCTGTAC 2505769 28 100.0 38 ............................ GGCAGACACGACAACAACAATTAAACAACTTTATGAAG 2505703 28 100.0 39 ............................ GGACGAAACGACAAACTGGCGTGCCAAGTTCATTGAGTT 2505636 28 100.0 39 ............................ GGATGATACATCTCATTTGCAAACTTACCACAAACTTCA 2505569 28 100.0 38 ............................ GATGGTGCCGCTGCGATGTAGCAATGTGTCAAGGCTGA 2505503 28 100.0 37 ............................ GTAAACTTTAGCTGGGTAATGGTCAACAATAACACCT 2505438 28 100.0 38 ............................ GTAGCCCTGAAGCAATAAAACAAATTATAGGCATTATA 2505372 28 100.0 38 ............................ GGGACACTGGTGATACAAAAGAAGGTGCAGGTCAATGA 2505306 28 100.0 39 ............................ GCGTTTTTTATTTTCAACTTTCTAATTATATTATATCAC 2505239 28 100.0 38 ............................ GGAAATTGAAGCTATATTGAAACTTTTAGAAAACAAAA 2505173 28 100.0 38 ............................ GGATTAAAAAACTGTGTTAACTTTTCTATCAACGCTGT 2505107 28 100.0 39 ............................ GAGTTCGTAATTGCTTAAAGTAGCTCTTCCAATTCCTAA 2505040 28 100.0 37 ............................ GAATGAATGTATGTGCATTTGTTTTGTTGCCCTATTC 2504975 28 100.0 38 ............................ GTCCCTCTCTGGTTTTCATAACAAAGGACGGTGAAAAT 2504909 28 100.0 40 ............................ GATTCGGACTGGCTTACTTCTTTTTGCGAAAAAGCTTCTG 2504841 28 100.0 38 ............................ GCGCTTGTTTTTTGTGCTTGATAAAATAAAAAAGCCAG 2504775 28 100.0 38 ............................ GTGCATTTTTGCTATCTCTTGTAAAATTTGACGTGCTG 2504709 28 100.0 38 ............................ GCTTGTAGGAAAAAGAGGTAAACAGATGTTTGTGTTTT 2504643 28 100.0 38 ............................ GGTTAAACCTGTTCTCTGCTGCCTTTAACTGTTCAATT 2504577 28 100.0 37 ............................ GGTCAAGCTTGTGTACTATTACAGCATCAAAAAGTTT 2504512 28 100.0 38 ............................ GTTTGAGGTCCTAATAGACTACGAAAATTTTAACTTGA 2504446 28 100.0 38 ............................ GGGCAAGAACGTAGAAAACTTTTGTTAGACATGTGCGG 2504380 28 100.0 39 ............................ GCTTTGAGTTTTCACGTAACACATAGAAAAGCAGCCAAA 2504313 28 100.0 38 ............................ GTGAAATTAACTGTCCTATTAAATACCGTGCTGGAATG 2504247 28 100.0 36 ............................ GATTGAACTATTAACTGAACTAAACGAAATAATTCA 2504183 28 100.0 39 ............................ GTATGACGAGGTTATACATCTGAGACGTTTTTTTTACAA 2504116 28 100.0 37 ............................ GCCAATCGGCGTCCAATTCCCCCAACTTGACAAATCT 2504051 28 100.0 38 ............................ GAAAATCAACAGAGAGCAGACGAAAGAATTCCAATCCT 2503985 28 100.0 38 ............................ GCTCAAGAAAATGAAAAGGAGGCATGTGAGATGGTACA 2503919 28 100.0 38 ............................ GGAGAAATCGAAATTTAAAGGCAAAAAGGTTTATCAAG 2503853 28 100.0 38 ............................ GAAATATTTTGGAATTCAGGGCTTACATGCATACGGGT 2503787 28 100.0 39 ............................ GTCATAGTGCTTGCAGTCAAAGCAGCAACCATCACAGTA 2503720 28 100.0 36 ............................ GGAGTTGCTTGATTTTTGGAAAGAGTTAAGGACAAG 2503656 28 100.0 38 ............................ GACATATTTCAAAAACCATCCATCTTTCATCTCAAACA 2503590 28 100.0 38 ............................ GTTTTTGGGGACACTCCCATTGCAATATGGGGGTTATC 2503524 28 100.0 38 ............................ GGAACTGCACTGCAAGCATGTGTTACAATTTGTTTTTC 2503458 28 100.0 38 ............................ GGTTTAAAGTATGTGAAACAGAAAATATGTTTGTGGCT 2503392 28 100.0 37 ............................ GTGCAAAAGCTCAAAGGCTTGAAGAAATAAGCACAAA 2503327 28 100.0 38 ............................ GAATAGTGAGAGTTTTTATGGACTTTTTGCACGTAGTG 2503261 28 100.0 38 ............................ GTGGGCAGTGATTTGCAGATTGTATTGTATAGCTCAAC 2503195 28 100.0 40 ............................ GTGCTGCTGGAGTGCGGAATCAATGTGCAAGAAATCAAAA 2503127 28 100.0 37 ............................ GAATTGTTTTAATGTAATTTGTGTCAAAATCAAGTTC 2503062 28 100.0 38 ............................ GACAGTATTCTGGAGAAAGAACCGTGAGGATTGGCTTG 2502996 28 100.0 38 ............................ GGGTCAATGCAAATACGCATTCCAAATCATCTCCTTTA 2502930 28 100.0 37 ............................ GATCTCAAAAATAGTTGAAAATTGTTTAACTTTTAAA 2502865 28 100.0 37 ............................ GCGCAGTCTGCTTGCCATTCGTCTTGCATAGCAATTT 2502800 28 100.0 37 ............................ GTTCTCAATGCGACTTATTGTTTCTGGAACTAATCCT 2502735 28 100.0 38 ............................ GACGGTGTTCTGGAGAAAGAACCGTGAGGATTGGCTTG 2502669 28 100.0 38 ............................ GTTTTCGTTTTCGGCTTTTGCAAAAACTGTTACATGTT 2502603 28 100.0 36 ............................ GTGCTCTTAGCTCGTTAAGATAATACAAATCAACTT 2502539 28 100.0 39 ............................ GGTAGCTCTTGGAAACAAAATTCTTTTTCCAGGACAATA 2502472 28 100.0 38 ............................ GATACTCAAGAATGTAGTTTGCCACAAGAGTAATCACC 2502406 28 100.0 37 ............................ GGTGCTAAGGATTGTTCTACAGTCGTCAGTATATTCA 2502341 28 100.0 37 ............................ GAGGCACTGATTGACGAGATGGCGTTCATGAAGGTTA 2502276 28 100.0 37 ............................ GCACACGAAAAATTCACAGCTGAAATGTGTCAAAAAG 2502211 28 100.0 37 ............................ GCGCAAATTGAAAAGGAAGCACAAAATTTTTCTTAGC 2502146 28 100.0 37 ............................ GGGTAATTTATATGCTGCATGGTTGCTGGGCGACAAA 2502081 28 100.0 37 ............................ GAAGAAGAAGCATTTTGGATTAAAACAGCCGAAGAAG 2502016 28 100.0 38 ............................ GGATACAGAATTAGAGAGATTGCAGAGATATGACCAAA 2501950 28 100.0 37 ............................ GTCTGTCATGAGATAATTGTTTATCAAGCTTGTAACA 2501885 28 100.0 38 ............................ GAAAAGTTTATACAAGATGCAACAGGTAAGACATTTGA 2501819 28 100.0 38 ............................ GGCAAATGACGGAGTGCATGATTATATTATTCGTGGGA 2501753 28 100.0 38 ............................ GTGTAATGTTTTCTATTTCATCATGTTTTATTGTCATT 2501687 28 100.0 38 ............................ GTAGATGCAGATAAACTCGAAATAAGAAAGATTCTTTC 2501621 28 100.0 38 ............................ GGGGAAACTTTTGAAAGAATTAAAACAGCTTATAATAA 2501555 28 100.0 37 ............................ GGTATGCAATTTGGGGCGGTCGAACAGGCTGAAAAAA 2501490 28 100.0 38 ............................ GCTTTTATAAATTCCAAAATCCCATTAGCTATTCCTTT 2501424 28 100.0 39 ............................ GAACCCAAACCCGCTATCTTAGATTTGACAAGAATTAGA 2501357 28 100.0 37 ............................ GAAAAAGGACAAAAAAGAAATGCAAGTATGGAATTTG 2501292 28 100.0 38 ............................ GACTGTTATAGCAGAAATTGATGGTATACAATATTACG 2501226 28 100.0 37 ............................ GCTATCAAACCGCAGTACATGAAAATTCCAAACGACA 2501161 28 100.0 39 ............................ GTTAAAAGAGACAAAAAGGTTCTGGCATAAAAAGTTTGA 2501094 28 100.0 37 ............................ GACATTATTATGGCAGATTACAAGTTAGTTATAACTC 2501029 28 100.0 39 ............................ GCAATAGCAAAATTTGTTACTATTGAATTTGAAAGAATA 2500962 28 100.0 38 ............................ GACCTGCGGACAGCCTATCCCAGAGGAGAGAATTCAAC 2500896 28 100.0 39 ............................ GCAAATATGTCTCGCATGAATGTAGCAGGTCCATGATTT 2500829 28 100.0 40 ............................ GACTGTTGATATGCGTGTTTTACATGGGCTGGACATTCAG 2500761 28 100.0 37 ............................ GAGCAGGGCAAGAGGCAGCGCAGCAATTAACTAAAGG 2500696 28 100.0 37 ............................ CATTGAGACAGGCGGAATATTAGACGTTTGCCAACAT 2500631 28 100.0 39 ............................ CTTGGGTTTTTTGATTTATAGTAATGTGACAAAGGAGAA 2500564 28 100.0 37 ............................ CATTGAGACAGGCGGAATATTAGACGTTTGCCAACAT 2500499 28 100.0 38 ............................ CTTTGAAAGCATTGAAGCTCCCAAAAAGGACAAAAAAG 2500433 28 100.0 37 ............................ CTACTGGTAGCTAAATTTTTCTGAGGAGGCTTGACAA 2500368 28 100.0 37 ............................ CTTGGGTTTTTTGATTTATAGTAATGTGACAAAGGAG 2500303 28 100.0 37 ............................ CAGAGCACTGTCACTTTGCAAACAAGAATATTTCAAC 2500238 28 100.0 38 ............................ CGAGGTGGCACCAAGCTATGTTGACATTTTCGTGAAGG 2500172 28 100.0 36 ............................ CCTTATCTCTACTTTGAAAAGTTTTTATACAAAAAA 2500108 28 100.0 37 ............................ CAGAGCACTGTCACTTTGCAAACAAGAATATTTCAAC 2500043 28 100.0 40 ............................ CCAAGGCGGAACACCCGATAAGGTTATTCTAATTACTGAG 2499975 28 100.0 39 ............................ CGTGCGGATTTCAGCGGACTCAAAAGAGAATTGGCTAAG 2499908 28 100.0 38 ............................ CTGCGTGTGAAACGTTGCTCAGGATGCTTGAAGGTGTA 2499842 28 100.0 39 ............................ CCTGAATTTTCTCATTTTCTTTCTGCAACCAGTTTGTAA 2499775 28 100.0 36 ............................ CCGATGCTTGAGTACTTCAATACAATATGTAGAGAG 2499711 28 100.0 38 ............................ CCTTCTGTGTAAAAACTGTATATGCGATTATTAAGGCA 2499645 28 100.0 37 ............................ CAGTAAGCTCATACCTTCTTATAATATTTCCTATCTT 2499580 28 100.0 38 ............................ CTGGATGAACGCTTATGACTTTTATTATAAGCTCATTA 2499514 28 100.0 37 ............................ CCGAAATTTCAAGGTCAACTGAATACAAATTCAAAGA 2499449 28 100.0 36 ............................ CTTCTGTAATATATAACCTTTGTGAACACACCATTT 2499385 28 100.0 41 ............................ CAAATCACGCTGCATACCAGCTAAGATTATTTCAGCAGCTG 2499316 28 100.0 37 ............................ CATTTTTTTGTCAAAATGTGTCATGAAATACAGCAGA 2499251 28 100.0 39 ............................ CCTGTGCGATGTTGTTCGGAAATTCAATAACAAAATTTT 2499184 28 100.0 39 ............................ CTTGCAAAGGTGACTTTCTAACTTGGAAAGTCATCGATA 2499117 28 100.0 37 ............................ CTTTAAGAAGCTTTAATTTATCTTGTAACCTTGTTGC 2499052 28 100.0 38 ............................ CTTGCTGGGGTTAGTGTTCTATGCAGGGTGGATGGCAA 2498986 28 100.0 37 ............................ CGTATGAATACGACGCAGAGACGCTGAGAGAAGAACT 2498921 28 100.0 39 ............................ CTTCAGTCAATTCTGAACTGCTCATCTTGTTTAGCATTT 2498854 28 100.0 39 ............................ CGATTATCACGATACGGGTGTGCAATATAAACTACCAAG 2498787 28 100.0 37 ............................ CAATGCTGAAGAAGTAGAGAGATATAGCAATACATCG 2498722 28 100.0 38 ............................ CGTGACAATGGTTATGAAGGCTGGACAAGGCATGGTTG 2498656 28 100.0 39 ............................ CGACAAGGGCAGAAAAGTTATGTCTTGAGTTGAAAGAGA 2498589 28 100.0 38 ............................ CGTTTTGAAATGGGCATTGACAAACATACAGATAGAGA 2498523 28 100.0 38 ............................ CCACATGGCAGGACCAAGCACAGCATTAGAGCAAAACG 2498457 28 100.0 37 ............................ CAGGGCTTTACCGGCGGTAGGTATGCCACTATACCAA 2498392 28 100.0 39 ............................ CTTTCAAAAGCTGAGAGTTCTCTTAAAAGCACTTTAACA 2498325 28 100.0 37 ............................ CTGTCAAATAACTCGTCCAAATGTGGCAATTTAATTT 2498260 28 100.0 37 ............................ CCAATCTGTTGTTGCTGCTGTGGTGTTAATTTGTTGA 2498195 28 100.0 38 ............................ CGGCTTTGGAGGCAAGACTTTTGGATTCAACATTAAAC 2498129 28 100.0 37 ............................ CGCACAGGTTTTGTTTGAAAAGAACGGTGTTTTATGG 2498064 28 100.0 38 ............................ CGTTGCATACATCATTGCTGCTTTCTGTTGTTGTTCAG 2497998 28 100.0 39 ............................ CATTGTGCATTTCGAGAAACGAAATCCTGGATTAATTCT 2497931 28 100.0 40 ............................ CAAGATTGTTTTGTCAAGAAATTTCCATTGGCTGAACACA 2497863 28 100.0 38 ............................ CAGTAGGGCTGGTCTTATTTTTTGGGCATATATTGAAA 2497797 28 100.0 36 ............................ CTTGAGTTTATAAGCAACTTCTACGATATTAGCCAT 2497733 28 100.0 39 ............................ CTGATTTTGCTGGATTTTTTAGTTACCACTCAGTTACCG 2497666 28 100.0 37 ............................ CGCAAGCTTCAAAATGCTTTCTGGTGGCTCTTCGCCA 2497601 28 100.0 38 ............................ CACTGCTGTTACAGCTTCATAAAGTTGTTTAATCGTTG 2497535 28 100.0 37 ............................ CTATTTTAGAAATGTATCAACACAAAAAAGCCAAGCT 2497470 28 100.0 36 ............................ CTATGTAAAGGTGGGATGCTGAATGGCACTCAATGT 2497406 28 100.0 38 ............................ CCGTAATACAAAACATTGCCGTCAATGTCTGTAATCTC 2497340 28 100.0 38 ............................ CCGTAATACAAAACATTGCCGTCAATGTCTGTAATCTC 2497274 28 100.0 38 ............................ CGCATAATAGTTTTTGGTTTAACAAAGATAATGGACTA 2497208 28 100.0 37 ............................ CGTCAAGGGGCAAAATCAAAGGCAACGTATAGATGGA 2497143 28 100.0 39 ............................ CACAACAAATATACAGCGTGATGTTTACGCTTATAACTA 2497076 28 100.0 38 ............................ CCTAATAAAGCGACAAGTGTTATGACATCATCTTTCCA 2497010 27 75.0 0 ...................C-..TCCTG | ========== ====== ====== ====== ============================ ========================================= ================== 148 28 99.8 38 GTTTTATCTGAACTATGAGGGATGTAAA # Left flank : TCTTTGTCATAGTAACATACGACATCAATGAAAAGAGAGTCAACAAGGTAAGAAAGATTTTGAAAAAATACTTTACATGGGTTCAAAACTCAGTTTTTGAAGGAGAAATCACACTTGGCAAGCTTGAAAAGTGCAAACGAGAACTTTTATCGGTTATAGAAAAGGATGAAGATTCAGTGTATTTTTATGAGATGGAATATAAACTTGTGTGCAATAAAAAGGTTTTGGGACAAGAAAAGAACTATGATTCTATTATAATTTGAAGATTTTGAAATAAAGTTAGAGATGAACCTGTATTTCCGAACAAAACCATTCTGCAGCGAGGCCTATAACTAATTTAAAGTTTCTGCCTTCTCTTCCTACAAGGCTTTAAAAGATATTTACCAACTCCTTACAAAACCCAACCACCCCCTCGCTGCAATTCATTTTTGTTGAGAAGATTTTGCTAATGGGTTATAATAAAGATATAGCATAGAAAAGATGATATTTTTTATTAATGG # Right flank : TAATGAACGAAAATGAGCGAAAATGAAGTGAAATGAGATTTGCAAGAAGGAGGTACCTCCTGGTAAAATACAGAATGTAAGTTGTACAACTTACGACAAAACACAACAAAGGAGGTACCTACCTTGAAGTATACACAAAATGAGAAGATATTACAAGTGACAGAGAAAACTTTAGTTGTAGGAGTAGACATAGCAAAGGAAAGGCATGTTGGCAGAGCGTTTGATTTTAGAGGAGTGGAGCTTGGCAAGAGAATAGAGTTTGAGAATAGAAAAGAAGGTATGGAGAAATTTTTGGATTGGGCGAATAAGATAATGAAAGCCAATGGCAAAGAGAACGTGATAGTAGGGATAGAGCCTACAGGGCATTACTGGCTGTGCTTTGAGCAGTATCTGAGGGAGAATGGCATAAAAGTGGTTTTAGTGAATCCTTTTCACGTGAAGAGGAGCAAGGAGCTTGACGATAATACGCAAACCAAGAGTGATATAAAGGATCCAAAGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 2652729-2654638 **** Predicted by CRISPRDetect 2.4 *** >NC_014721.1 Caldicellulosiruptor kristjanssonii I77R1B, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2652729 30 100.0 36 .............................. GCAAAAGTCTGCAAACATAGACGGCTCAAGGCTTAG 2652795 30 100.0 37 .............................. TCTTACTTCCTTTTGTTGTAATAAAGATTCTTTCACC 2652862 30 100.0 36 .............................. ACAAAAACAATACAATGTGATAATATATAATCGTGA 2652928 30 100.0 36 .............................. TAAAGTAAACAAAAAACCATTTTACCAATCCCATAT 2652994 30 100.0 37 .............................. GCATAATAAGAAGGTTTAAAAAAATTGAATATACTAT 2653061 30 100.0 38 .............................. TCTATTTGGTTGTCTAAAAACGTGTCAAGTAGTTTATC 2653129 30 100.0 35 .............................. CTATACATAGCAGTATCCAACATAGGTAATGAATA 2653194 30 100.0 36 .............................. CCCCTACCCCCGCCGCCAACCTTCCATTTCTTTCCC 2653260 30 100.0 37 .............................. CTGATAAGTGAATTCTTCACCAAGCGCTTGAACAACG 2653327 30 100.0 34 .............................. ATGTAAAGCAACCTGAACATTTTTTGCTACGTCG 2653391 30 100.0 36 .............................. CTGGAGGAAGTGCTCCACTGTTGGGAGGAGTAGAAC 2653457 30 100.0 36 .............................. CTATTATACCCACCTTCATATCCATGTCAACCCTGA 2653523 30 100.0 35 .............................. GCTGCTTGAAGTTTGAAATAGTCTTTTTTGTGCTT 2653588 30 100.0 36 .............................. GTACAATGAAGCGATAAACAACTAAATTGCACAAAA 2653654 30 100.0 38 .............................. TTTATGTATGTCAATAGTTTTTTAAACTTTCTCTACAA 2653722 30 96.7 34 .........................A.... ACCACAGACCTTAAATACCCAGACAAAGCCTTCA 2653786 30 100.0 35 .............................. AAATTTGCCATTATAACATTGTTGTTTTTGTGTCC 2653851 30 100.0 36 .............................. ATAATTTAGATGAATTTAAAAAATATTTAATGACTA 2653917 30 100.0 35 .............................. TTAATACTCAACATCCTATCTATATTCAAAGCCGA 2653982 30 100.0 35 .............................. CATTATTGCTTTGTTTGTGTTATAATCTGTCTTGA 2654047 30 100.0 36 .............................. TTTTCTCATCCAATTCACATATCCAACGATAATCAG 2654113 30 100.0 36 .............................. AACTTTTTCCAGGTATTTCTCTATATCTTCCATTTT 2654179 30 100.0 35 .............................. TAAGATGGAGAATTAAGTGAGGGATGGCGTTGTCC 2654244 30 93.3 33 AG............................ TCTACTGTATCAGTATGATGAACTGGTATTGCT 2654307 30 96.7 36 .G............................ TTCAGGACGGCAGTCAGGAAATTTTCCAAAACATAG 2654373 30 93.3 36 ....A........................T TCAATTTTTTAACGATACATTTCTGAACAATAATCG 2654439 30 96.7 36 .............................T TTGAGCACTTTGTTCATCTCATGCACTGCTGCTTCG 2654505 30 100.0 35 .............................. TATTTCCCTGATTGTTACATGTTCTGTCCATTTAA 2654570 30 90.0 9 ...........................GGA GGGAGGGGG Deletion [2654609] 2654609 30 86.7 0 ...........T..............T.GG | ========== ====== ====== ====== ============================== ====================================== ================== 30 30 98.4 35 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : GGCGTAGCATCTTTTGGAAAACCAGGTCTTTTTGTAAGTGTATTTTCCTCTTTGTGTTCTGCACTGTGCATGTTTCAGAATCCCTCCCAAAATGGATTGTTTGTAAGTTTTTAAGCGTTTTATATTTATATACCCACATCTGTTTTTGTTTAAAACTATCTAATTTTTTATTTTACTCTGTTTGCTATTTAAAACAATTCAAAAATTATGCGAAGAATAGTTGTGACTATTGTTATTTATTCTATTTTTTGTTATATTTGCTTTTCTATTAATTACTAAATCAATGCGTGTATTTAGAGTATCAAGACATATTTAAACTTTTGTATTTTCCAATTGCTGTCGACCTGCAATCCCACCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGACATGTGTTGACTTTCAAGAGTTTGTGGGGTATAATAGAAATAACCTATAGCAGCTTGAAAACTTAACCATTTGTTCCTTGCGGCTTTCTTCAAATTATCTACGG # Right flank : GCGGGTGGGGATGAGTTGTAGCTTTCCTGTTCGGTTTGAGGAAAAGTGAGAGAATTGGCTGTCTGTTTCTTGTGTGGACTTAAATCCAAATTTTAGTTTACTCCCAGTTGGGATAGCTGTGAGAGTTGCAACCTTTTTAGGAATTGGAAATGAAAAGACATAAAGGATGAACAAAAAAATTGTCTAAAAAGAAAAAGGACTTGCAAAAGTTTTTGTCTTGCAAGCCCATCTTGACTTTGTCAGTTAAGAGGTGTTTTTGAGCTAACAAAAAATAACAAAGTCTTAATTTATGCGGGTTTCAAGAAGAGAAAAATAAAAAATTTTAAAAAATGTAGGGACAAATTTTAGCTTAATATATACTGAATTTGCTTGACTTTTTAAATATTTTGTGGTACAATATAACAAACTATCTTCAAGGAGTTGCCATATGTTTGTCAAAATTACTAATGCTGGCGGTTATCAGTATGTTAGGTTAGTCGAAAATTACCGTGAAAATGGTA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 4 2666352-2668217 **** Predicted by CRISPRDetect 2.4 *** >NC_014721.1 Caldicellulosiruptor kristjanssonii I77R1B, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2666352 30 100.0 37 .............................. CCTATAGATATGATAAGAATGAAGTATAGAATTAAGG 2666419 30 100.0 35 .............................. AAGTTGACTGGATAGTTGTATTTTCTAATACTTCG 2666484 30 100.0 37 .............................. TAACAAGAAATTCGTAGAAACGTTAACAGGACAAAAG 2666551 30 100.0 35 .............................. AGATTTCAATTGATTTGGATGAGATATATTTGTGG 2666616 30 100.0 36 .............................. GCTTGTCTGTTAGTGCTTCTCTTTTTTCCTCTTGCG 2666682 30 100.0 36 .............................. TGATTTTTTATTGCAATTTTTTTAATTAACCTGAAA 2666748 30 100.0 35 .............................. CAAATCTTTCAGGAATTAGGCATAATGATTTATCT 2666813 30 100.0 36 .............................. TTTGTCTTCCAAATCCGGATTGAAGTTTGGTTTGTG 2666879 30 100.0 38 .............................. CGCCACGCTTCAAAAAATGCACTGTCACTTTACCATCA 2666947 30 100.0 37 .............................. AATAAATCTTCATTTAAAAAACTGCTAATCTCATATC 2667014 30 100.0 37 .............................. TATATTCGCATGCGCGGCGCCATAGTTCGCCGCCATG 2667081 30 100.0 36 .............................. CTCATTTTTTTTACTCCCCCTTTTGTTTTTTCTTTT 2667147 30 100.0 36 .............................. TCAAATGAAACAATAAACTTTTCAAAGTCAAAATTA 2667213 30 100.0 35 .............................. TCGGATTTGTAGGCAATGCTGTTACGGCTAAACTG 2667278 30 100.0 36 .............................. TATTCTTTGATGTTAAATTCTAAGTCGTTATATAAA 2667344 30 100.0 36 .............................. AAAGTAGTTCTTTAATTTTACGTTGCAGAGCTTTTT 2667410 30 100.0 36 .............................. AACTGTCCATAAGCTAAAAGCTTTTTCACAACTTCC 2667476 30 100.0 38 .............................. CACCACATTGCTTGCTACTTCAGTAAGCAAAAGATATT 2667544 30 100.0 37 .............................. TAGTAATCTCTGCACCATTTAATATTACTTCATATGA 2667611 30 100.0 35 .............................. TGAGTGGCCAAATAGTTTCACGTCAACCGTACAGT 2667676 30 100.0 35 .............................. ATTGCTGGAAAATTGTAATTCATTTTGTTTTCACA 2667741 30 100.0 34 .............................. GTATGGTTTGTTGGTGTTTTTGTGCTTGCTTTGG 2667805 30 100.0 37 .............................. GGATTATTGCATTCGGTAAAGTATGAATACAACATTA 2667872 30 100.0 37 .............................. TCTGTTAGAAGTTGGCAGCCAAGCCTTATACTTGTAG 2667939 30 100.0 35 .............................. TTAATCACTCTTTTCTTTATCTCTTCCCATTCCTG 2668004 30 80.0 7 T..........C...T...........GGT GGAGGGG Deletion [2668041] 2668041 30 86.7 38 ..............AC....A........A CAAAAAAATAGATGTTTTACTTGGAAAAAACTCAAATG 2668109 30 83.3 15 ........T..C..TAC............. GGAAGCCTTGACCCT Deletion [2668154] 2668154 30 83.3 4 ...........G...C...........GGA GGGG Deletion [2668188] 2668188 30 73.3 0 .AA......T.GT..T.....A.G...... | ========== ====== ====== ====== ============================== ====================================== ================== 30 30 96.9 33 GTTTGTAGCCTTCCCGTTGGGGATTGAAAC # Left flank : AAGTAGGCTTCATTCCCAGAAGAATCACCAATTAGAATGTCACCAATCTCAACTATTTCCTCTATCAATATCCTCTCACCTCTCTTTTATGTTAATTATACCAATTTTATTTTTAACATACAACCAAATTTCGAACTAACAATCTTCGCTTATCGCTACACTTTTTAATTTTACATACCATGATTTAATTTTTAAGGTCAAATTTTATGCGAAGTAAATTAGTTATATTTGTTATTTTTGTTGTACATCATCATATATGTTTGCCCTGTATTTCCCAATTTTAATTATGTATCTTGCAATTTATTACATATATCAGTTTTTGTATTTACCAATTGCTGTCGACCTGTAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGACATGTGTTGACTTTCAAGAGTTTGTGGGGTATAATAGAAATAACCTACAGCAGCTTGAAAACTTAACCATTTGTTCCTTGCGGCTTTTCCCAAACTATCTACGGG # Right flank : CGGTGTTTTGTCAGAGCTTTTAATTTTAGCGCAGTCACCCCCGCCAAGTTTGAATATTTTTTAAAATAAAAAAGGCAGTCGTCAAATTATTCTTGACGCTGCCTTTTTTAAACTCTCATTTTTCTTTTGCTTGTTTTAGAATTTCTTCAACAAGTTGAGGAGAAATTCTTATGTTCTCTTCAATCAACTTTTTTATAAGCGGTTCTATTTGACTGACAAGCCCAACTTCTTTTGCTTTTAATAAAATTCCCAAGGAACCTGTTAGTCTCAGCCCTAATAGTTTGGCAACACTCCTTCCTTTCTTCTCGTCCATTATTAATAAATCCGCATTTGATTCTTTTGCCAATATAATGGTTTCGCTTTCTCCTTTATCGATGGCCTGTGTTCTTTGCAAGATTTCTGCTGCAAATTCATTTCTTAACTCTTTAATTTTTAAAAATGCAGCATTAATTATTCTACCTTTTTCTTCCTCAAACTTTGAACTGTACGTAAGTTCTTGA # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCGTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 5 2669623-2673724 **** Predicted by CRISPRDetect 2.4 *** >NC_014721.1 Caldicellulosiruptor kristjanssonii I77R1B, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2669623 30 96.7 37 ...........C.................. ACAATTAAAAAATTTTCTTCAATACAAACATCATCAG 2669690 30 96.7 37 ...........C.................. TCAAAGTAATATCGAATATCCCCAATTATCCCCTCTG 2669757 30 96.7 36 ...........C.................. AAGCGTGATACAGCTTATTATATGGCATTTGTAGAG 2669823 30 96.7 36 ...........C.................. ACAATTCCTGATATATTTCCATATCCATACTGCAAG 2669889 30 96.7 38 ...........C.................. CTAATTTATCAAGTATCTCATTGTACTTCTGTTGATTT 2669957 30 96.7 37 ...........C.................. AATTTTTTGCAGTAGCGACAGCTTCAGCAAAAAGCAC 2670024 30 96.7 35 ...........C.................. TACTTCTTAATGCGTTGCTTTTATTCCAGCGGAAA 2670089 30 96.7 34 ...........C.................. TAATTAAAACTAGCAATTTAATAATCCCCCGCAA 2670153 30 96.7 39 ...........C.................. CCATCAATCTTATTGCCGTCTATCTCTGTTGTCCTGCCC 2670222 30 96.7 37 ...........C.................. AGAACTTTTTTGAGCTCAGCTTTGTTAACCTCTTCTT 2670289 30 96.7 36 ...........C.................. ATAGCTGAATAGCTTCATCTTTAATTTTACCTTTGT 2670355 30 96.7 36 ...........C.................. GTAATTCCTTCGCTGACGCTCCATTTAAATTCGCTA 2670421 30 96.7 35 ...........C.................. TTTTTTCTTCTCTGCTAAATGCTTGTGGCTTACTC 2670486 30 96.7 37 ...........C.................. ATTGTAAAAGATATTCGATATTGCCTAAATCATTCAT 2670553 30 96.7 36 ...........C.................. TCACCCTTCTTCCCATCCCTTATATCTAACAATACA 2670619 30 96.7 36 ...........C.................. AAGAAATTGAATCAATAAAAGACATACCAGAAGTTG 2670685 30 96.7 35 ...........C.................. TCTTTTCTTTACTCTCACTATCAATTCTAATCTGC 2670750 30 96.7 37 ...........C.................. GATAAAATGGTAAGAAATGGTAGCATGAAGATAAAAT 2670817 30 100.0 35 .............................. TAAAAGACCTCGATTGTTGCACCATGCTCTTTACC 2670882 30 100.0 37 .............................. TCAGTACCAAATCTGTTCTTGATATATTCAATCACCT 2670949 30 100.0 37 .............................. GACCCTCTAATTGTTTTTGTTTTGACTGATAAAATTT 2671016 30 100.0 35 .............................. GCAAATTATGGAATTTCAGCATCCCAATTGGTAAA 2671081 30 100.0 36 .............................. ATATCTCAGGTAATCTCAAAATCTCAGAAAAAACAA 2671147 30 100.0 37 .............................. CAACATTGTCAATATCCATTTTTCTGTTTGTAAAAAC 2671214 30 100.0 35 .............................. ATGATTCTGGTAAAAACACACTGAGTTCTGACCGT 2671279 30 100.0 36 .............................. ATAGCACAAATAGTGTCAGACATGGCTACAAAATAT 2671345 30 100.0 36 .............................. TATTTTAGCTTTGTGGTATGGATTTACCAAAGCAGG 2671411 30 100.0 35 .............................. TGAACGTCTGAGAGGCATTTTAATGGCATGGTGGT 2671476 30 100.0 38 .............................. TTGAAAACTTTGACCATTCATCTTCTTGATTTTGGATG 2671544 30 100.0 36 .............................. CTTTCACAATTTTATAATTCCTATGGGTAAAAGTAG 2671610 30 100.0 35 .............................. GTGCCCGGACAATCTGTTGCCATGAGGTCTCTATG 2671675 30 100.0 35 .............................. TAAAAAGGAATTTGAATATGCAAGACTACGACAAA 2671740 30 100.0 35 .............................. CTCTAATATACCTATTCGTCAAGAAGTCATTGAAA 2671805 30 100.0 36 .............................. AAGTCCTGTAACTCTTTAATTCTTTTTGCCAAGTGC 2671871 30 100.0 35 .............................. TGGGATGGAGTAGTACTGATGGCTATGAAGTTTTT 2671936 30 100.0 35 .............................. CCCCACTTGAATTGCGAAAAGTAATTGAAACCTAT 2672001 30 100.0 39 .............................. TGGTGACGAAAATGAAAGAGTGAAAATATTCACTGTAGG 2672070 30 100.0 35 .............................. TAAAAAGGTATTGCAATTATTGTCCTATGCACAGA 2672135 30 100.0 36 .............................. ATAGATTTCATTTCGCAGCCAATAGAGCGGTTTATA 2672201 30 100.0 36 .............................. CTCAATTTCTGTTTCTCTTTTCTCAATTATTCTTGA 2672267 30 100.0 36 .............................. TATAATAGCCCATTCATCAAAAACTTTTTCATCGAA 2672333 30 100.0 36 .............................. TATAATAGCCCATTCATCAAAAACTTTTTCATCGAA 2672399 30 100.0 37 .............................. CACAAAATTATAGTTTGGCGCAATGTAAACACGAACA 2672466 30 100.0 38 .............................. TCTATGTCTTCTTCAAGATACATATCGAGCAGCTTATT 2672534 30 100.0 35 .............................. ATACTTTTTTTCTCACGGTCTGTATGGCCTGTTCA 2672599 30 100.0 37 .............................. TTTCTAACAGCGTTCAAATCAGCTGCGTCCTCGACGA 2672666 30 100.0 37 .............................. ATTTTTCTTTGCAAGAATGGTTGATTAACATAATTAG 2672733 30 100.0 35 .............................. AAATAGTTCTCCCAAGATAAATAGAGAACATTTAG 2672798 30 100.0 36 .............................. GCTAAAGCAATATCAGAAGTATCATGGTTTGAATTT 2672864 30 100.0 36 .............................. TTTTCTACATTGTAATAATACACTTTTATAGGAACT 2672930 30 100.0 36 .............................. AAAATTTTGGGCAGAGCTTGGATGGATTAAAGCTCA 2672996 30 100.0 36 .............................. TATTAAACGATTATGAAAATAATTTGCCAATTGATA 2673062 30 96.7 36 .............................T AGTAGCCTTCCCTTTGGGGATTGAGGCTTAAAGCCT 2673128 30 96.7 37 ...........C.................. TGTGTAATCACTACGTCAAAGGTTATTCCTTCTCCGT 2673195 30 96.7 36 ...........C.................. CTGAGATAAAATCATTTAATTTAAGTCTTACATTAG 2673261 30 93.3 36 ...........C...T.............. TCTTTTTTGCTTACTCTTGGTTTAAATTCTTTTCTC 2673327 30 93.3 38 ...........C...T.............. CATGCAGTTAATGTTGATTACAGTTAATATTATAATCG 2673395 30 93.3 33 ...........C...T.............. ATTTATAGAATTTTTCTGCCCAGTTCTTCATAG 2673458 30 96.7 35 C............................. GAGAACCAACCTCAAATGCATTGTCACATGTTGCT 2673523 30 100.0 37 .............................. TCAGTACCAAATCTGTTCTTGATATATTCAATCACCT 2673590 30 100.0 36 .............................. CTTTCACAATTTTATAATTCCTATGGGTAAAAGTAG 2673656 30 90.0 9 ...........................GGT GGTGGAGGG Deletion [2673695] 2673695 30 83.3 0 ...........C...T...........GGA | ========== ====== ====== ====== ============================== ======================================= ================== 63 30 98.1 36 GTTTGTAGCCTTCCCGTTGGGGATTGAAAC # Left flank : TTTATTATCGTCTAAAAATATTATACATCCTTCATATTAAAAATACACTCCTATTTTAGCGAACAAAAATTTTTGAAATCAGTCATTAATTACCGCTGCTCCGTCCATCGTCACCTAAATCATCAGGATATAGGTGTTCAGAGGCAAAATAACTATCAGCTTCGATTTTATATTTTTTAAATCTATTAGCTCAAACAAATCATAATTTTTGCGAAGCCCTTTTACGATTATTACTATTAATACTGTTTTTACCTTTTATGTATTGCTATTTTATGGTAGATTGCCATTTGTATTTTGAAATATAAGCCAATTCTTTATTTTGCATTTACCAATTGCTGTCGACCTGTAATCCTCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGACATGTGTTGACTTTCAAGAGTTTGTGGGGTATAATAGAAATAACCTATAGCAGCTTGAAAACTTAACCATTTGTTCCTTGCGGCTTTCTTCAAACTATCTACGGG # Right flank : AGAGAGCATTTTCTCTAAATTGCAATATTAAATGCAACACTTTTTTAAAAGGAACTGGAAATTACTAATTGACTAAAACTTTAACTGTGTATGATATTAGTTGCCAATATATGCCAGCTTCCCTGCAGGGAAGCTGGAGCTACCATTTTGTGTTATATTCTCTTCTATTTAGATGGTATCTCCTATACCTCAACCAAAAGCTTCTCTAATACCTCTACTTCACATATTTCCCTTATCTCACTCAAAAACTTTTCCAAACTACTTTTATACTTGAAAATTCTCCTGGGAAGTCTATTGTACCAGTCGCGTATCCTATTTATTGCTTCTTTCGATATTTTGCTTATTTCTTTCCCTTTGGGTAAAAAGCGCCTTATCAACCCATTCATCCGCTCGTTTGTTCCTCTTTCATATGCTGAATATGGATGCGTATAATATCCTTCCGACCCTAATTCATTTAAAACTTTTCCAAGCTCGCTAAATTCACTCCCGTTGTCACTCGT # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCGTTGGGGATTGAAAC # Alternate repeat : GTTTGTAGCCTCCCCGTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 6 2689674-2691514 **** Predicted by CRISPRDetect 2.4 *** >NC_014721.1 Caldicellulosiruptor kristjanssonii I77R1B, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2689674 30 96.7 35 .............................T TTTTTATCATTGTTATTTTTTTAACAATGCATTGA 2689739 30 100.0 36 .............................. ATTACAACATAGGTAATGTTAATGATGAAAGAGCTA 2689805 30 100.0 35 .............................. ACTTTACTTCACAGGGTAGAAAAATTATTTTAGGG 2689870 30 100.0 36 .............................. CCGCTTTTATAATGTGCTTCATAGGCTTTGACCATA 2689936 30 100.0 40 .............................. TCCTCTATTTTATCGAGAGCCCCACGATAGGGTCTCTCGA 2690006 30 100.0 35 .............................. ATATAATATAAAACCGTATCAAAATAATACCTAAT 2690071 30 100.0 36 .............................. TCTAACTTTTTTGTTTTTACTAATCCTTTAACATTG 2690137 30 100.0 34 .............................. GATGAAGATTTATCGCAATACTTTGAAGAAGAAA 2690201 30 100.0 34 .............................. TAAATTTTGGTCGGGTGCAAGTAAATCATTAAAA 2690265 30 100.0 36 .............................. ATTCCTACTAAAATACTCGGTTTTTAATTCCTACCA 2690331 30 100.0 36 .............................. TGACACGATGCGGATATTTAACCTTGACGAAATTAA 2690397 30 100.0 36 .............................. GAGAAGACTGTGTAATACATTTGGAGGGAAGTAAGA 2690463 30 100.0 34 .............................. TTCCCGAATAACTGAAGATAGAGCTATTTCGTCA 2690527 30 100.0 36 .............................. TTTTTTCAGAAGCTTATCTAAGTTGAAATAGATAGT 2690593 30 100.0 36 .............................. GGGTGAGCTAATACGCTCATCCCTTTAGCGTTTATA 2690659 30 100.0 36 .............................. ACTTTTTGATTGACGATGTTGATGCTGCACAGGCTA 2690725 30 100.0 36 .............................. TCGTTCTCGTTGTAGGCCATTGCGAACTGTCCTATA 2690791 30 100.0 34 .............................. CCACAGTGTTCACAGTAAAAGTACTCAGGATGAA 2690855 30 100.0 37 .............................. CACAAAATTATAGTTTGGCGCAATCACGGTCTCCTAA 2690922 30 100.0 36 .............................. CGAAATACTTTACCATATCGGTAATTATATTTTACC 2690988 30 100.0 37 .............................. GAATAAATACTTCTCTACCACACCTTCTACAAATATA 2691055 30 100.0 36 .............................. TCGATATCAACAACAAAATCTATTATCATTTCGTCA 2691121 30 100.0 36 .............................. AAATAATGGAACAGAAACTCTTGGAATTAAATCAGC 2691187 30 96.7 37 ..................A........... AAAAACTTAATGTGCCAAATCTACAGCTTATTCAAAA 2691254 30 100.0 37 .............................. TCGTTCACATAATTTATCAATCCCCACACCGCCATGG 2691321 30 100.0 35 .............................. AGACAAATAGTAGTCTGCTACCTCTGCCCAGATCA 2691386 30 100.0 35 .............................. ACTATATTTGCTAAATCTTGATGCCCGATGCAAGA 2691451 30 90.0 4 ...........................GGA GGGG Deletion [2691485] 2691485 30 86.7 0 .A.........C..AG.............. | ========== ====== ====== ====== ============================== ======================================== ================== 29 30 99.0 35 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : ACTGTTTATTCCAGTTGCACTGCCAAAATTGATATGAGCATTTTTAACATGTAAGTGTTCCAGTTTTAAAACCCTCCATCATATTTTTTATAAGCCTGTGTTAGACAGCTTCTTTTCCTGTTTAAAATCTTTTAAATTAATAATTATTAAAAACACTTTATGTTTTATCTTCAAAACATAATTCATCGGATGCATGTGTTTTAATTAAAAAAAGAGTCGAACAAATTATTTCTTCTGTGATTCCATTTTATTACATTTTAGTTTTTTCATTTTATTCCATTTGGCTGCATGTATTTAGATTTATAATACTTAATTTAACTTTGTATTTACCAATTGCTGTCGACCTGTAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGCATGTGTTGACTTTCAAGAGTTTGTGGGGTATAATAGAAATAACCTACAGCAGCTTGAAAACTTAACCATTTGTTCCTTGCGGCTTTTCTCAAACTATCTACGG # Right flank : CGCTTTATAAACCATGTGACCTTGATACTGTGCATTAGAAAGACGTTAATACAAATTATTGGATATAATAATAAAAAAAGCCACGCAGAGGGACTTCAAAACATGCCTCTGTCGTGGCTATTTTTTTATATTGTAAAAATCACCCTGTCAAGCTTTGCTTAAAGTTCTACTCAAGTCTTCTTTTCAGCCAGCAGTTTATATCATTAAAATTAACATTTAAACTATATCTTACTAATACCCTGTCATTTTCTGTCCTAACTTCTGTTGCATTTCTCTCAAATCCGCTGTGTGCAAAAAAGTTTCTTGGGTCAATTTCACCTGCTGATTTGTCTGGATCAATTATTCTGTAAAGCCCTGTCCATGTGGAGATATCACCTATCTGTTTTAATTTTTCCTGTGTATTTGAAACTTCATTGCCAAGCATTACAATGTTTGTATGAAGCCTAAAAATCAAATAAATCTCCGAAAAACTGTTCTTGACAGTCTCTATATCAATTCCT # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 7 2695882-2697327 **** Predicted by CRISPRDetect 2.4 *** >NC_014721.1 Caldicellulosiruptor kristjanssonii I77R1B, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2695882 30 96.7 37 ...............G.............. TAAAGCTTCTCTCTGTTGTCATCTGCCTCCATGAAGG 2695949 30 96.7 35 ...............G.............. CATTTTGAAAAGCCCTACTTATATAGCGCATTACG 2696014 30 100.0 35 .............................. TCTTGCATATTGACCAGCAGCAGAAATACCTAAAG 2696079 30 100.0 35 .............................. ACTTTCTCCATCATTGTTATCATCCTCGATGTCGT 2696144 30 100.0 36 .............................. CCCTACTATACTCTCGCCACCGCAAAAACTGCAAAG 2696210 30 100.0 36 .............................. AGTTCAAACACTGCTGCTTCGATAAGTTGTTCAGCT 2696276 30 100.0 34 .............................. CGACGGTGCTGAGAGGTTCAGTTCCTGGTTTCAT 2696340 30 100.0 35 .............................. CTTACCTGCATAGCGTCTATTTCCCACCATTGCAC 2696405 30 100.0 36 .............................. TTACCTATTGGCTATCAATTTCAACCGATAGCTTTG 2696471 30 100.0 35 .............................. TTCTTCATCTATCACTTCTACAGCTGGTGGATTGT 2696536 30 100.0 35 .............................. CAGCTAACCCTTACCCTTACATTTCCCACTGTTAG 2696601 30 100.0 35 .............................. AAATTGCTGTAGTAAACACCGGGAAAATACAACCT 2696666 30 100.0 36 .............................. AGATTTTGAAAAGCATTGAAGAGTCGCTTAGAGCTC 2696732 30 100.0 36 .............................. AGGTGTGTACTTTACAAATCTGTCATCTTTCAAAAG 2696798 30 100.0 36 .............................. TCAAAACATACACCGCATTTACTACACTGTTTACTA 2696864 30 100.0 36 .............................. AGAAAACTAAAAAATGGTTTGTCATTTGGTCGAGTA 2696930 30 100.0 36 .............................. TCTTTTGTGAACTCATGTAAAGAATCATAACTCTTA 2696996 30 100.0 35 .............................. ACATTCGGATTTCTAAGGAGAGATTGGAGAATGTT 2697061 30 100.0 36 .............................. AAAGCTATTATCCGTCAGTCCGCTTTCAAATTGTGG 2697127 30 100.0 37 .............................. TTAAGTTTACAAACATAGACTATCTTAATAGTTACAA 2697194 30 100.0 36 .............................. ACAGAACAATGATGGCAAACGCTGAAGAAATAGATG 2697260 30 90.0 9 ...........................GGT GGTGGAGGG Deletion [2697299] 2697299 29 76.7 0 ........TT...T.G..-........T.T | ========== ====== ====== ====== ============================== ===================================== ================== 23 30 98.3 34 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : TTCTGAAAATCTGTGGTATAAAGTAAAGCAGGCTTTCAATCCATATCATAAATGTTAGTTAACTTCTTTCTTGAAAAACTTGTTATTTAGATAAGTGCTACTAATATGGAATAGTAGAACTTTATTTATGTCTTATGTTGTCAGTTTTTGCAACTTTCTACTCACCAATATTTGAAATACTTGAAGAGATAGAAATTCTCTATCATAACTTTCTACTTGATGCATACCAAGTCGGGCTTTGTCAGCTTTTTCTTGCTATGTTATTACATTTTTATCCATTTTGTTTCGTGTATTTTGTGATTACAGTTCTTTAGTGATTTTGTATTTACCAATTGCTGTCGACCTGTAATCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTATTTTCTGGCATGTGTTGACTTTCAAGAGTTTGTGGGGTATAATAGAAATAATCTATAGCAGCTTGAAAACTTAACCATTTGTTCCTTTCGGCTTTTTTCAACCTATCTACGGGG # Right flank : TGTAACACTGAGAAAAATTGTCTATACAGATTACAGTAAAAATTTAAAAAAATATAAAATACAAAAATTAAACAATGTGAGAATAAGAACAACGAATAGGATATTTGAATTATGGAATAAACATAACAAAAAACGATTTATCTTTACCTTGAAAATATTAACCCAAACTATTTCTCCCATCTAATCTGTATAAACATTGCAACAGTTTTTATCGGATTGAGTGGAAAATTATACCTGTTAGATAAATACGGTAACTGGATATTGTTAAAAAATAAAGATTTTATAATTATGCAATATACTGGGGATAAAGATGCGGAAAGAAAGGACATATATGAGCCCACATAATATTCTGGATGATGCTGTATTACCAGTTTCATAGTTTCTGAAATCTGTTTTAAGTACATCGACAAAAGTAGATTTTTCTGGATTTGCAAGGTTTGCAATATCGCCACTCAACTTAATTAAAACTTTAGCAAAATGTCTTCTTTTTACATAAGATT # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 8 2712825-2708850 **** Predicted by CRISPRDetect 2.4 *** >NC_014721.1 Caldicellulosiruptor kristjanssonii I77R1B, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2712824 29 100.0 37 ............................. TTATGGTTAGCAAAAATCAATGCTAACATCATTCAGG 2712758 29 100.0 37 ............................. GCTCAAGTTTTCTGCAAGTTTAGCAGAGGACATTGAT 2712692 29 100.0 36 ............................. TTAAAATTCTTGAGGAGACAGCAGAAGCATATCTCA 2712627 29 100.0 37 ............................. TACAGAGCAAAAGCTGCATTTATTATGAATGATGCAA 2712561 29 100.0 37 ............................. ATTGGAATTGCAATAGCTGCGATAACAGGGCTTATTG 2712495 29 100.0 38 ............................. TTTGGAACTGTCTAATCAGACAGGAATAAGCGTAAATG 2712428 29 100.0 37 ............................. TCCGAAAAGTTTCGACTATTGGCTAAGATACATTCGA 2712362 29 100.0 36 ............................. TGCTAAAAATTTTTATTTTTATAATTCGACACACGT 2712297 29 100.0 38 ............................. GCAAACTACAGTCCAGAGAATGCGCTCAAAGCAGCCTG 2712230 29 100.0 36 ............................. CTTTTAACTTTTCTTCTTTTAGCAGTGATACAAGAG 2712165 29 100.0 37 ............................. CTCAATCTAATCATAGATGCAATCAACCTTATTATTG 2712099 29 100.0 37 ............................. ATCAAGGGTGCGAAAAGACAAAGAATAGACCCAGCGG 2712033 29 100.0 38 ............................. TGCTGGCAGCTAAATTTTTCTGAGGAGGCTTGACAATG 2711966 29 100.0 37 ............................. GATATGATTGAACTTTTTGTGGAAGGGATTTTGAAAA 2711900 29 100.0 36 ............................. GCTCAACAGTAAGTGTTTTATCTTCATGTATCAACC 2711835 29 100.0 36 ............................. TGGATGCTAAATTCATGGCGGTAGGGCAAAGTGTCT 2711770 29 100.0 35 ............................. TAATTTTAACATGCTTGAGTTTACAAGCACATATG 2711706 29 100.0 36 ............................. TTGTATATACAACATGCAAAACCTTCACCTATAGGC 2711641 29 100.0 37 ............................. GTTTGGAAAACAGTGTTTGGCAGCATGATAGAAATTG 2711575 29 100.0 36 ............................. CTGCTATACAAATACATAGCGGTGGTGTTTTTTATT 2711510 29 100.0 35 ............................. TACACAGGTTGTTTCACGTCACTATGATGTTCCAC 2711446 29 100.0 36 ............................. AGTTTTTTGAGTTTAGAAATGACGTTTGCAAAAGTT 2711381 29 100.0 37 ............................. AGAACAGGCAGAGTTGCCATTGTGCCACCTTGGTTTT 2711315 29 100.0 36 ............................. AGTAAAACATTAGAAGATTTGAATACTCATATTAAT 2711250 29 100.0 36 ............................. ATCAAAAACTCCTTTTTCAGCTCTTCCAAGTTCCAG 2711185 29 100.0 37 ............................. TTATTTGCATCAAGTGTGTTGGCGACAGGTGGCCCGG 2711119 29 100.0 38 ............................. TCTTGCAGGCCACCAAGTGCTACGTCCAGTCTCTTAAA 2711052 29 100.0 35 ............................. TTGCAAAAAGCAAAAGCACCGCAGCTTTTAGCCAC 2710988 29 100.0 36 ............................. TTATTCACGGTGGCAATGCCTTCAAACAAATTTTCG 2710923 29 100.0 35 ............................. ATATCATGTAGAACAACTGCAAGAACAAATGCATC 2710859 29 100.0 37 ............................. TATATCAAGAAGCTTGAAGAGGAGAACCAGAAGCTTA 2710793 29 100.0 37 ............................. TACAAATTTAGACAATGAACAGGTGCAGGATATCTTG 2710727 29 100.0 36 ............................. TTCCAAAGCGCTGACGATTTTCATCCCACCATACCA 2710662 29 100.0 38 ............................. TTCTCAATTGGACATCTTTCAATTATTTCCATCTCCAG 2710595 29 100.0 36 ............................. ATATTGAAATGGGCACTTACTAACTTACAAGTTGAG 2710530 29 100.0 36 ............................. CAGTTTGTAATGGATATAAGCTCATCGGTAGTTTTA 2710465 29 100.0 38 ............................. AAGACAGAAGGCTTTCAGTTGAGAAAATATAACTATAA 2710398 29 100.0 38 ............................. GAATAACAAACAGACAATTTATTTTTTCCACTATATTG 2710331 29 100.0 37 ............................. AAAAGGAGGAATAAAAGATGTTAACTGAACGAGGTTG 2710265 29 100.0 37 ............................. TTGTTAGAACAAGATTAATACCAAATCCAAATTTGGA 2710199 29 100.0 36 ............................. GAGCTTCACGGAACAGCAGGACCTTACTTTATAGAA 2710134 29 100.0 36 ............................. AAAGAGAAATTAAATAAAACTGAAATAGAGTTTTTA 2710069 29 100.0 37 ............................. CAGCAGATAGGAGAAATCATTAACGACATGTTTAAGG 2710003 29 100.0 37 ............................. GAATTGGAGAAAAAGCTAATGGAAGAAATTATAGATA 2709937 29 100.0 38 ............................. ACAGCTACATCCGTTGTTGCAGGGTCTATTTGTCCTGT 2709870 29 100.0 36 ............................. TTCTTTTTAATCAAACATTACATCAGTGCCGCGTCT 2709805 29 100.0 36 ............................. GTAAATGAATATCTTTCAAATGAATATCTTTCAAAA 2709740 29 100.0 37 ............................. AAAGTTTTTACTTCAGTCTGGGTGATACTGAGAATGT 2709674 29 100.0 38 ............................. TAATAAGCATTTCCTGAAACGGAATTTTTATCTGCATA 2709607 29 100.0 38 ............................. ACAACATGCTGTCTTACGTATATCTCAGGAACAGCATT 2709540 29 100.0 37 ............................. GAAATATTTTTCCCATGTATTATTCCTCCCTGTTAAA 2709474 29 100.0 37 ............................. GATTTTCTTGTTGTGCCAGTTCACAACGTCATGACAT 2709408 29 100.0 38 ............................. AATTTTTATTGATTTTTAAAACGTATACTCTGTGATGA 2709341 29 100.0 38 ............................. CTTTTCAAAGTTCTATACAACCTCAGCAGCATAGCAAA 2709274 29 100.0 38 ............................. AGGCATTTGTCTAACCAAACGTGAAAAAAGCGAAACAA 2709207 29 96.6 37 ...A......................... CTGTGCTTGTTGTAGTTCTTCAAATTCACTATTTAGT 2709141 29 100.0 36 ............................. AAGACTGTTTGATGATGAGCACGCTCCCAACCCGAC 2709076 29 100.0 36 ............................. ACAAGATTTCTATAATCATAGATGATAAAGCATAAT 2709011 29 100.0 37 ............................. TTTTTAATGCAATAGATAAAATTCACAAGCTTTTTAG 2708945 29 100.0 38 ............................. TCTTCTTCAGTTGTAATAACCTCTGCATACCCCATTAA 2708878 29 93.1 0 ..........................TG. | ========== ====== ====== ====== ============================= ====================================== ================== 61 29 99.8 37 GTCTTATCTGAACTATGAGGGATGTAAAC # Left flank : TATGTTCTAAAAGAGCTGAATATCATTAAAAAGTAACATGTCTAATATCATAAAGAAAAACCTAAGCATGTGGTATTCACAGATTTTTATAAAATATAAAGTGCTTTAGTATTGAGAGAAGTGAACTTCAAAGAGGCAAAGATAGGCTGACAGCCTTAATAATTCTTTAATTCAGCATTTGATTTCGTATCTGTTTGGTGATACGTTATTAGGGAACAGTATAAGAACGAGTATTTGTAAAGTAAGGTAATAAGAATTTATAAAATGCATTATAATACTATCTGTGATATTATATTTTTGCCATAATAAACCAATTTGCAGCAGAGCTCAAAATAGATATAGAGTTGATTAAAGTTTGATATAGCTGGGATTTGCAATAATCTGGAACATATTGCCAAATCATAACCACCTCTTTGCTGCAAAAATTAATATTGACAGACATTTTAAATTTTAATAAAATCAAAGTAAAATCTAAGCAAGAAGGAATTTCAGATTTAATG # Right flank : TAAAATATTATCATAATAGCCCTTTACAGAACTATCGAAACTATTTAATTAGGATAAAATGCTCAATTTATGAAATTATTAAAAACCATTAAATAGCAGAACAAATTCATTAGAATTTATAATATTAAAAATACGAAAGGGAGTTTTTGCTATGGGGAGAAAAGAAGTTACTGTTAAGTTAGAAACAATAACTCCATTGTGGACAGGCGATGCTTGGTTGCAGAATAAAAAAATTAGACCGTCGTCATTAATAGGAAGTTTGAGATTTTGGTTTTCTGTATATTGGAAAGTAATCATTAATAAAAATACTGAAAAGTTAAATGACAAAAATGTAATTGCGGATGATTTGAGAGAATTTAAAGATCTTAGAGGAAAAAAAGCCACATTCCGGCAAATTTTATTTGAACGTATTGCTAAAAGAGAAGATTATAAATGTTTTGATGAAGTATTAGATGATGTATTTGAAGAATTGGGGTTACCTGTACCATCTCGACTGTTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 9 2720632-2722724 **** Predicted by CRISPRDetect 2.4 *** >NC_014721.1 Caldicellulosiruptor kristjanssonii I77R1B, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2720632 30 96.7 36 ...........G.................. TGTACCACTTTGTAAAAGTCGTCTACAGTCTTGCAA 2720698 30 96.7 36 ...........G.................. ACTCAGAATAATCCCGTCGAAATTATGCGGGATTAC 2720764 30 96.7 38 ...........G.................. GCTTATGTTATTCCCAATACCGAAATAATTTACACTTA 2720832 30 96.7 39 ...........G.................. TTTACCTTTTGCTTCAAGATTTCTTTGTCTATGTCTTCT 2720901 30 96.7 37 ...........G.................. TTTTTTATAACCTCCTTTTTGTTTTACAATTATAATT 2720968 30 96.7 36 ...........G.................. AGTGTTTCATCACTCATCTGTTGAACATCTTTTAGC 2721034 30 96.7 38 ...........G.................. ATCCCCTTTCACCGTTGAATCCTTAGCCCGCCACTCCC 2721102 30 96.7 39 ...........G.................. TCTGCACTCCTTTCTTGATATCTTCAAACGGGTAAAATT 2721171 30 96.7 39 ...........G.................. TTTCATCGAGGAGTATGACGCTGTATGCAAAAACTGCTA 2721240 30 96.7 38 ...........G.................. GTCCTCAGCGGTGGAACAAGTCCGCAGTACACAACGAG 2721308 30 96.7 35 ...........G.................. ATCTGTAGAGGCTGTAGACACATTGGAGTACTTGA 2721373 30 96.7 39 ...........G.................. ATCATTCTATCTTGCTGAGCTACAAGGATTATATCATAA 2721442 30 96.7 38 ...........G.................. ATCAATTCGTTAAATGTACTATTCAATCTTTCATACTG 2721510 30 100.0 37 .............................. GGTAGTACAATAAACCTATACGACTCTGTCAATGCAA 2721577 30 100.0 38 .............................. TGTATCTTTTTTAGCAGTTACCTGTTGCCCAGTCTTTA 2721645 30 100.0 38 .............................. TTTGCATCATCGTTTTATACTGTTGTGGAGACAGAAAA 2721713 30 100.0 38 .............................. TGCTTTATATCAACTGGCTGGCACACCTGTTGGTCTTG 2721781 30 96.7 37 .............................T ATCTCTACAAGGTAGTATTCGATTACTGCCCCCTCAG 2721848 30 100.0 40 .............................. TTTTCCCATTTCTTCTTTGCAGCTTCAAGCCTTAAGGCTA 2721918 30 100.0 37 .............................. TCTTGTAGTTTAGCTAATTCTTCTTCATTTGTGCTGG 2721985 30 100.0 37 .............................. CTTTGTAAAAGATATTATCATGATGCTTTTTATAAAA 2722052 30 100.0 36 .............................. TGTTTCATAGCACCTACAATTAATATGTTCCCTGTT 2722118 30 100.0 37 .............................. TTTTCTGCTCCTAAGTCGTCTAAAACAAGCAATGATG 2722185 30 100.0 38 .............................. ATTTCTACACCTCTCTTTTTGCAATATTCAATAAAACC 2722253 30 100.0 37 .............................. TGGTCTTTGTCGAACAGAAGCCATGTAAACGCGTCAA 2722320 30 100.0 37 .............................. ATTGTTGATTCTGGACCAAAGCTTATCTCTCTTACAA 2722387 30 100.0 36 .............................. TTTTAAAAGCTTCTCAAGTTCTTTTTGCAGTTCGCT 2722453 30 100.0 37 .............................. CCCTTATTTTAATTCTGTATATCATTTTTATTTTTCC 2722520 30 100.0 37 .............................. CAATTTGTTGAATGATAACAGCATTGCTACCTATTAC 2722587 30 93.3 38 ...........T...G.............. GTTGGAGTGCAGAAGAGGCAATTGCTTTTTTAAAGTGG 2722655 30 90.0 8 ...........T...G.............A AGAAGAGA G [2722682] Deletion [2722693] 2722694 30 76.7 0 ....T..C...TT........A....G..G | T [2722720] ========== ====== ====== ====== ============================== ======================================== ================== 32 30 97.3 37 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : AAAGACTCTTTTTATATGATACAATTGTTAAGCAAAATTTTAAAGTTCAAAAATCATGCGAGGCTGCTTGTTTATTAATAAGTATTTGTATTCAGTTTTATAACTTCCAGGTTAGAAAATTGATTTTGGAGACATGTACTATACATGCTTTTGTAATATTATTCATTATTACTGAGGTACTTATGTATTGATATGCATTTTGACTAAAAGTCATATCCGTCGACCTCAGGTGCAAAATTTTAAGAAGCTGATTTGTATTCGGTTTCATATTTATGGGATGTGGGTTTGAACGGATTGCTGGCAGCAGATGGATAGACGAAAAGGGTTGAAAGGCTTCTTTTGTTTGATGCAACTGGGTTTGTTTGATTTTGAGGGGATGTATCAAAATAAAAACATTGACAGGGGTGCATAAAGTTGATATAATAAAATCAAGCTTTTCAACCTGTTTGTAGCCTGCCCTTTGTTTAATTCTTTCTATAATGCATTTGATATCAATTATT # Right flank : GAAAGGAATTGCAAATCCTAAACTTCGCAAAAAATTTGACTTCAGCTTTTCTCTTTTTTGTCCTATCATCAAAAGTAGAAAATCCCTTTTGTTAGAAGGGGGAAATAAAACATGTCTTATCTTCCAAAGAGTCCAAAGGAAGTTTATGAACAGATTTTACTTGAATACCAAGCCTATTCAGAGTTTAAAAAAAGAATAGAAGGAAAGTGTTACCTGCCACACGATCCTGAAAATGTCCTTTATCTGTACTGCAATTCCACTTTCAATGAAGAATATGAAGAAATGTTGAAAAGCAAACAAATTGAAAATTACGTTGAGCCCCAAACCGAAGAAGAGTGGGAATACTATGCCGAAGAAGATGAATATTGCAAAGAAGAATTCGAAAACGACTTTGAGTTTTTTGATGCAGACTATGAAATGTCAAGCGAAATGGATGATATAGTTGATGACCCTGATTTTTGGGATTCTTTTGATTATGAATGGGGCGACTGATTTTAAAA # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 10 2731763-2732193 **** Predicted by CRISPRDetect 2.4 *** >NC_014721.1 Caldicellulosiruptor kristjanssonii I77R1B, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2731763 30 100.0 37 .............................. TTTCAACAGCTGTATCTGATGTGGTATCAGTCTCAGG 2731830 30 100.0 39 .............................. TCGCGAGGATATAACCCTGAAATATCCAATTCACACCAG 2731899 30 100.0 36 .............................. ATTGTAAGACACTGATTTTTATTTAATATTTGCATA 2731965 30 100.0 35 .............................. TAACATCAAGAGAGGTGTAAGCAAACACATCTGCA 2732030 30 93.3 36 ...........C.................C CAGCATTTCTTCTGCTGGCAGGGCAAATTCATACCC 2732096 30 93.3 38 ...........T.................C ATGGGTAATCTACCACTAAGAATTACTCCCATTGGTTC 2732164 30 96.7 0 ...........C.................. | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 97.6 37 GTTTGTAGCCTGCCCTTTGGGGATTGAAAT # Left flank : ATCTCCCTGTTAACTTTGAAAATCTTATATTTCGTATACCACACAGCCAGCTTAGCGACTTTTATGACCCGATTACGGGTTTTAAAACAAAGGGGGAAAGCTACCTGAGTTTTTAACACTTTTTGCTTTCTCCCTTGTCATACCTGTAGGTTTAGAGATTTTACCTTGTTTTATTCTCCTTGCAGCACTTTTAATATAGCTATTGTTGTAATATTATTCATAATCTTTGAAGAAATCGTGAATACCAATACATTTTGACCAAAAGTCATATCTGTCGACCTCTGGTGCAAATTTTTTATAAGCTTGATTGTATTCGGTTTCATGTTTGTGGGATGTGGCTTTGAATGGATTTCTAGCAGCAGCTGGATAGACGGAAAGGTTTGAAAGGCTTCTTTTATTTGATGCAACTGGGTTTGTGTTGATTTTGAGTGGATGTATTAAAATAAAAACATTGACAGGGGTGTATAAAGTTGATATAATAAAATCAAGCTTTTCAACCT # Right flank : TCTTCACCTCCTTTTCTGGGCATAAAAATACCACCTCAACCACTTTGGTTGGGTGGTTAATTAGTGTGCGGGCATTTTCTTGACTTTGTCAGTTTGAAGTTCAAAAAGCTTGAGAGGACTGGGATTGACAAAATTTGGTCTTCAATTTTGTCACTACATCATTTGCTAATACCAATAAATTCTAAGCCTTCCTCCATATGTCATGAAATTTTTTGGACATTTTATCTTCATTACAATCATTATATCTCCAGCTCCCCGTCTATTCTTTGCTTTATCAAATATTTCTTCCCTTTTATCTCTTTTTAAAAAATTCATTGAATATATTGCTTCCATTTGTACTTCATTTACCATATCTCCTCTTGACTGAAAAAGTCAAGAGAATTTCTCTAAAACAAAAGAATACATAGCTACTAAGTTTAAACAATTCAAACTACACCCTATTTAAAAGAAACTCTTTGATGATATCTCTTATTTCCGGTATGCCGTCAGAATATTTGACA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTGCCCTTTGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //