Array 1 19153-18658 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAHV010000040.1 Legionella birminghamensis strain 1407-AL-H, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 19152 32 100.0 33 ................................ AAGAATGTGCCACAGAATAGTACTTTTTCAGTT 19087 32 100.0 33 ................................ AGTATCCGCTCAAAATAGAGTTAGATATTATTT 19022 32 100.0 33 ................................ TTGTTCTGTCAGTGTCACGCTATATAAGTCGGC 18957 32 100.0 34 ................................ ATTATAATGTACACCGTCATAATGAAAATCAAAT 18891 32 100.0 36 ................................ GTTTAATTTTAACTTTACATTCGTGCCCATTATGTC 18823 32 100.0 37 ................................ TAAAAAACCAATGGTATTTGCAAGACTATATCGAATT 18754 32 100.0 33 ................................ TTTTTGCTTGAACAAATTAAGTGCTGCAGCTTT 18689 32 96.9 0 ...............................A | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 99.6 34 GTCGCGCCCCATGCGGGCGCGTGGATTGAAAC # Left flank : TGTCGCGCCCCATGCGGGCGCGTGGATTGAAACATGTCATAGTGAATTAATATCATGAGTATATGCCATGTCGCGCCCCATGCGGGCGCGTGGATTGAAACTGTAGCATCTGATAAAACCCTTACTTTGCCATTGTCGCGCCCCATGCGGGCGCGTGGATTGAAACAACGATGAAACTAGGGCGTTGCCCGTCTGAGGTTGTCGCGCCCCATGCGGGCGCGTGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTTTGACATTGTATGTTCCGAGTGCCGGAACAACGTGGCGCCCCACGCGGGCTGAGGAATCCCCTCATTTTTTCATTCAAAAAAACGTACCTTATTAGGGTCAAAATGACTTTAAATAATGTCGTTTCCGCGTAGCGGAAATCCATCTTGCAAACAAAGTTAGGAATTATCTTGAGAAATAGGGTGGATACCACCGAATCCCCGCGGCTTTGACCGCGGGCCCACACGAAGCCAATTTAATGTTAAGCACACTTGTTTATGACTACCCGTTAAATCTTATTTTTTGGCAACATTCAAACTTGTTTGAGGACCATGCTACTCCAACAGGCATGGGCCCCGCGGTCAGTGCCGCGGGGATTCGGACGGGGAAAATATTGGTGTAGATAGCTATGGGCTGCGACCGCGGGCTAAGGATGTTTTATCAACCTCAGTTTCCGTTGTCTAAACAGGGGGATTTCGTTAATATCGCTAAAGAAAAATTACAAGAGACGATAAAATG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCATGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.80,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19720-19421 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAHV010000040.1 Legionella birminghamensis strain 1407-AL-H, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 19719 32 100.0 36 ................................ CCAGTTTTCAGTATCAAACTCGCTGGCTACACTAAT 19651 32 100.0 36 ................................ ATGTCATAGTGAATTAATATCATGAGTATATGCCAT 19583 32 100.0 33 ................................ TGTAGCATCTGATAAAACCCTTACTTTGCCATT 19518 32 100.0 34 ................................ AACGATGAAACTAGGGCGTTGCCCGTCTGAGGTT 19452 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 35 GTCGCGCCCCATGCGGGCGCGTGGATTGAAAC # Left flank : GGTGAAATAATGTTAGTGCTCATAACTTATGATGTAAATGTCACCTCAAAAGACGGACAAAGCCGCTTGCACAAAGTTGCAAAAATTTGTCTGGATTATGGAATGCGGGTACAGAACTCTGTTTTTGAGTGTGAAATTGATCCCGCACAATTTGCCCTGCTAAAAAGCAAATTACTCAGAACAATTAATCCTGAAGTGGATAGTTTGCGATTCTATTTTCTAGGAAAAAAGGGAAGGAAGAGGATTGAGCACGTAGGTGCAAAGCTTGTTCCCGACCCACTTCGGTCGCATCTGATTATATAGTTATCAGGAAGAAAATTTTTTCCGCTAAACTGTAGTAGTCAGAAAAATCCGGTTGGATTAGCGGTTCCTTTAGTAATTGATTTATTTAACTAATGTAAAAAACTCTTTAAAAATTTGACGCTTCTCTAAAAAAATCGCTTCGATTAACGGAATCAACGTGAATTCTACTTATTATTCAATATAATTAAAATGAGACT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCGCCCCATGCGGGCGCGTGGATTGAAACAAGAATGTGCCACAGAATAGTACTTTTTCAGTTGTCGCGCCCCATGCGGGCGCGTGGATTGAAACAGTATCCGCTCAAAATAGAGTTAGATATTATTTGTCGCGCCCCATGCGGGCGCGTGGATTGAAACTTGTTCTGTCAGTGTCACGCTATATAAGTCGGCGTCGCGCCCCATGCGGGCGCGTGGATTGAAACATTAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCATGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //