Array 1 334787-335912 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHMM01000006.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N51248 N51248_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 334787 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 334848 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 334909 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 334970 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 335031 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 335092 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 335153 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 335214 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 335275 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 335336 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 335397 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 335458 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 335519 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 335580 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 335641 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 335702 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 335763 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 335824 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 335885 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 352171-353834 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHMM01000006.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N51248 N51248_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 352171 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 352232 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 352293 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 352354 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 352421 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 352482 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 352543 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 352604 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 352665 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 352726 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 352787 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 352848 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 352909 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 352970 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 353031 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 353092 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 353153 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 353214 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 353275 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 353378 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 353439 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 353500 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 353561 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 353622 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 353683 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 353744 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 353805 29 96.6 0 A............................ | A [353831] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //