Array 1 65140-64578 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAHCYG010000001.1 Campylobacter lari strain TTU_578 NODE_1_length_240357_cov_33.130989, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     65139	    36	 100.0	    30	....................................	AGAGCAGTAGAAGCAAGTTGCACGGTATCG	
     65073	    36	 100.0	    30	....................................	TTTTCTATAGTAAAATTAACTCCATAATTA	
     65007	    36	 100.0	    30	....................................	TCTTGGTAAAGGCACATTCTCGCTTATGCG	
     64941	    36	 100.0	    28	....................................	AATAACAAAGTATCATTAATAGACTTTA  	
     64877	    36	  97.2	    30	A...................................	TTATTTTGATAATATGAACTTATATGAATA	
     64811	    36	 100.0	    30	....................................	ATATCTTTTAAGTGAGATGTCTAAGACTGA	
     64745	    36	 100.0	    30	....................................	TCTTTGAGTTTTTCTGCTTCAAGTCTATCA	
     64679	    36	 100.0	    30	....................................	AGAATTACCTGAAAAACCAATTAATCCTGA	
     64613	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
         9	    36	  99.7	    30	GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT	                              	       

# Left flank :   ATAGCAGCGCTAATCCCTGCTTTTTTTATTTTAAGGTATTTAGGCATAGGAACTTTAATCTTGCTTGCAATTTTACTTTTCTTAGTTTCTATAAAAATCATCGATCAGTATGAAAAACAAACAGGCATACACGATGATAAACATATTGTAATAGATGAGGTTGTAGGGGTATTTTTAGCCTTGGCAATTTGCGGACAAAGTGTTTTTACTTTTTTACTTTCTTTTGTTTTGTTTAGATTTTTTGATATTACAAAACCTTCTATCATAGGTAAAATTGACAAAAAAACCAAAGGTGGTTTAGGTGTAATGCTAGATGATGTTTTAGCGGGGATTTTCGCAGGATTATTTAGTGCTGTGATTTATGGAATTTTGCTTAAATTTGATCTTTTGTGGTTTGATATAAGCATTATGGAAATATTTTAGCTTCATAAATTTGTGAAGCTATTTTCTAATTTTCTTTAGAGCAAAATAACAATAATTCTAATTGTATTTGCTATACG
# Right flank :  AGACTTTTATTAAACAAAGAAAACTAGGTGTTTTTCTATAGAAAAAAACCTAAAATATGTTATAATTCTTGCTAAAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTTGGTCATCCACGCAGGGTTACAATCCCTTTAAAACCATTAAAATTCAAATAAACTAGGTTGTATAAACTTGGTTTTTTTCCTTTCTTTGTTTATTTTTTCATTACTATATTTAAAATCTTTACTTTTTTCATCATATTCAAATAAAACTAGATTTTTATCATCATTCATTTTTTCATTAAAAGAAACCCCACCTAAAAGAATTTGCATATTATCAAATTGTTTTTCTGTTATGGTTAAAACTCTTATATTTCCATAAGGTGGTAAAATTTTTTCTATCGATTTTATCGTTGTTTTTGCCGAAGCTGATCCTTTGCAAATTTTCACATACACGCTAAATTGCATCATAAAAAATCCAAGCTTTATCAATGAGTTTCTAAATTTATTTGCGTT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:83.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//