Array 1 103873-104998 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYKK01000016.1 Salmonella enterica subsp. enterica serovar Braenderup strain CVM43205 CVM43205_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103873 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 103934 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 103995 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 104056 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 104117 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 104178 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 104239 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 104300 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 104361 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 104422 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 104483 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 104544 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 104605 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 104666 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 104727 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 104788 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 104849 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 104910 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 104971 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121257-123241 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYKK01000016.1 Salmonella enterica subsp. enterica serovar Braenderup strain CVM43205 CVM43205_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 121257 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 121318 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 121379 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 121440 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 121502 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 121563 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 121624 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 121685 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 121746 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 121807 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 121868 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 121929 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 121990 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 122051 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 122113 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 122174 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 122236 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 122297 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 122358 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 122419 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 122480 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 122541 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 122602 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 122663 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 122724 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 122785 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 122846 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 122907 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 122968 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 123029 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 123090 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 123151 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 123212 29 89.7 0 A...........TC............... | A [123238] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.3 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //