Array 1 57-2043 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMIY010000001.1 Campylobacter fetus isolate MGYG-HGUT-02374, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 57 30 100.0 35 .............................. GCTCGTACGGCACGGCATTTCTAAATTTCATTTGG 122 30 100.0 36 .............................. TGAGTTATGTGACCTATGGGTTCTCCTTTTATGACT 188 30 100.0 35 .............................. TTTACTTTTAGAGTTTGTAAAGTAGCGCTCACAGT 253 30 100.0 37 .............................. TCTTCCCCATTTAGAGGCTTTTGCGTGTTCTCATTTA 320 30 100.0 36 .............................. AGATCAAAATCTAGCCCGTCTTCTATAGCCCTATAT 386 30 100.0 37 .............................. GTAATATAAAATGTATATTTTTTAGAAAAAATTACTA 453 30 100.0 36 .............................. TTATTAGCAACCACTTTAAAAGCCTCTTGCGCTTTT 519 30 100.0 36 .............................. GCAAAATCTCCATACTTTTTCTAAAATTCGCCATCG 585 30 96.7 20 ...............G.............. GGTGGTGAAGGTTCTGGTGG Deletion [635] 635 30 96.7 35 ...............G.............. ACCTTATAAAGGTGCGCCTAGCGCTATGAAGTCCA 700 30 100.0 36 .............................. TCGCTAAACGGTAAGGCTACTGTGTATTTTAGGAAT 766 30 100.0 35 .............................. AAATTTATAGTGACACTAGCACTCCGCTACCGCCT 831 30 100.0 35 .............................. CATACTTAAAAATCTTATCTCGCAGAGATTTTACT 896 30 100.0 37 .............................. CACATATTCGTATCTACAATTACGTTATAACTTGCTC 963 30 100.0 36 .............................. CGGCTTTTAAATAATGCGTTTATTTCGCCCTGCAAG 1029 30 100.0 35 .............................. GTTGCAGCGTACGTGCATTCCGCACCTACTTTAAA 1094 30 96.7 37 ...............G.............. ACGATTATGGCGTCTCTGATGTATCTTCTTATAGGAT 1161 30 100.0 35 .............................. AAAACATTTTTAGAGGCGTCTTTGGCTACTGCTTC 1226 30 100.0 35 .............................. ATAATTATTGAAGAATATTTTTGTTTTAGACTTCT 1291 30 100.0 38 .............................. TTGCAGACTTTCCACTCTACTTTGTCTTGTTTGCCATT 1359 30 100.0 36 .............................. AAAATAAGCGCCGAAGAACTAGCAGAACTTGAGGAT 1425 30 100.0 36 .............................. AATTTAGGTCCGCCACTTATTCCTGAAGACTTTGCG 1491 30 100.0 36 .............................. CTTTTAAACTCACCGTCATCGACAAGCACAGCTCCT 1557 30 100.0 36 .............................. AAAAGAAAATATTAGCACTGATAAGGAGTTGATTGA 1623 30 100.0 35 .............................. ACAAAAACACATTTTATGACGAAGCATTAGGCGGA 1688 30 100.0 37 .............................. ATTTTATCGATATTCCGAATGGCACATACCGTGGCGC 1755 30 100.0 35 .............................. CCGTCATCTCCGCCGACATTATTAAAATCCAGCTC 1820 30 100.0 35 .............................. TCTCCGTCTGGATCACATTCGTCAAAAATAGACGT 1885 30 100.0 32 .............................. AAAGCTACTATGCTATAATAATGGTCTTTTTG 1947 30 100.0 37 .............................. GCGTCAAATAGATCTCGCATTGTCTCTAAGTCAAAAT 2014 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 31 30 99.7 35 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TTTCAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATGG # Right flank : CAATTTCTTTTTTAATGCAAATGAGATAGTGACTTGTTATAAGCCTAGCCAAAATAAAAAAGAGGCATTTGGTTACTTTAAAAATGCTTCAATATATGATAAAAAAGAGGTGATAAAATGGAAAATCGCAAACTTATTATAGAGTTTTTAGGCATAGAGTGGTTCATAGAAATACCAGACTATGATGATAAAGTAACAAAAGGCTTAGGGATTATAGCACCCATAACTTCAGTAAAAAATGGCAAGATAGCTCGTATATTTGATATCTTTGCCCCGGAAACTGAATGCATAGATGATGCAAAAGAGTATAAAGAATTCTATGAGATCTGCGATTTTGAAGTACCGCAAACTAATCATAAATTCACAGGTACTTTTATAGACGCTTTAGAATATATAAAAGATACCTTTAATCAAGTTTCAAAGACTGTTTAACATTTGACGGCGACAGGCTAATAACAGCTTTTAAGCCGACGCAAGGATATATCAAGATATTTCAAAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1857-2342 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMIY010000028.1 Campylobacter fetus isolate MGYG-HGUT-02374, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1857 29 100.0 37 ............................. AATAAGAGGATTGTCTGAAAGATTTGGGGATGAGCTA 1923 29 100.0 36 ............................. CCTGCAGGCTTGTTTATTACACTAAGCGTAACTGCG 1988 29 100.0 37 ............................. AATAAGTGAGCTAAAAGATAGCGGTGCAAATATCGGG 2054 29 100.0 36 ............................. ACAATTAAAGGCGGTATAGCTTGCATCGTTTCAAAA 2119 29 100.0 35 ............................. TTAAAGTAGGTGCGGAATGCACGTACGCTGTAGCA 2183 29 100.0 37 ............................. TAAATTTTTATATACTCTTTGGGGTGATTTAAAATTA 2249 29 100.0 36 ............................. ATACGATATCAACCGGCAAAACCAATCTATTTGTTA 2314 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 100.0 36 TTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTTAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTGGTTATTTAGAAGTGGTAGAATAGGCGTTCGACAAG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 57-873 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMIY010000035.1 Campylobacter fetus isolate MGYG-HGUT-02374, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 57 29 100.0 35 ............................. CTAGCCTTAATCTACATTGTACAACTATCACTTTT 121 29 100.0 37 ............................. CGATAGAAATTGGGTTTGGAATTCGAGTTGTTGTTTT 187 29 100.0 37 ............................. CTTTTATTCATATCCTCTTTTGTTTTTTTTAATTTTT 253 29 100.0 37 ............................. CTAGGATATACTTTTGTATTTAATAAACTTTTCTTCT 319 29 100.0 36 ............................. CTTTTTGGTATGCGCTCACCCTCTTTTAAAAACTCC 384 29 100.0 37 ............................. CAGTCCCTTTGTTTCGTACTCATATTTGTCGCCAAGC 450 29 100.0 37 ............................. CTAAAATCCAACGTAATAAGGTAGCTTTGTTTCTACC 516 29 100.0 37 ............................. CGATATCAAAACAAGATTATTGAAAAAGGAAATAGAA 582 29 100.0 36 ............................. TAACAAATAGATTGGTTTTGCCGGTTGATATCGTAT 647 29 100.0 37 ............................. TAATTTTAAATCACCCCAAAGAGTATATAAAAATTTA 713 29 100.0 36 ............................. TGCAGTTACGCTTAGTGTAATAAACAAGCCTGCAGG 778 29 100.0 38 ............................. CATAGCAAATGAAGATAAAATTATTTTTACCCTAAAGC 845 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 100.0 37 GTTTGCTAATGACAATATTTGTGTTGAAA # Left flank : TTTTAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATGG # Right flank : CTAAAATCCAACGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 397-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMIY010000042.1 Campylobacter fetus isolate MGYG-HGUT-02374, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 396 30 96.7 37 ...............G.............. TAGACCTATATTTCGTAAATTTATAAAAGATATGGTT 329 30 96.7 36 ...............G.............. CACATAACATAATAGCTGATATAAACTACAGATATA 263 30 100.0 36 .............................. ACTTTATATATACAAGTTACTTTAGCAGTAGAAACA 197 30 100.0 35 .............................. TGCTAAGGCTAAGCGTATAATGGACGCGCTAAGTG 132 30 100.0 36 .............................. TTTAATAGTGCTCTTAAAACTGGCTTTTTATTATTT 66 30 96.7 0 ...............G.............. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 98.4 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : CAGGTGCATTCATCGTCGTTTAGTTTCACTATCTCT # Right flank : CTTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1-292 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMIY010000050.1 Campylobacter fetus isolate MGYG-HGUT-02374, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1 30 100.0 36 .............................. TGTTCTGTTTTTGCGGTGCGGTTAAAGTCCATTATA 67 30 96.7 35 ....A......................... TCCGGATTTAGCAAGGAAGCTTTAGCTCTAGCTTC 132 30 100.0 36 .............................. AACGAAAAAGAAGGAAGTTGGGCTGAGGGCATAAAA 198 30 96.7 36 ...............G.............. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTA 264 29 93.3 0 ...............G.............- | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 97.3 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 2105-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMIY010000020.1 Campylobacter fetus isolate MGYG-HGUT-02374, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2104 30 100.0 36 .............................. ACTAAAGGTACATTAGATATTTTTAAATCTAATGTT 2038 30 100.0 35 .............................. GGATTTTTTAAAGTTTTAAAAAAGCTTGACGGTAT 1973 30 100.0 36 .............................. GGAACAGAAGGGTTAGAACCAAGACCAGACTCCAAA 1907 30 100.0 36 .............................. AAAGAAGCGTACGTGCATTCCGCACCTACTTTAAAT 1841 30 100.0 35 .............................. TACGTTTCCCTCCTCGTTACCCTTGTTGTACTCCT 1776 30 100.0 34 .............................. CGAAAACGGCGAGAGACTTTTAACAAAGGCGGCG 1712 30 100.0 36 .............................. TCCTGGCTTCCATTCCAAAAGACAACATTAGCCATT 1646 30 100.0 36 .............................. AAAAAAGCTTTTCCAGCCTTTGGGCTCGTTCCGTTT 1580 30 96.7 36 ...............G.............. AATAGTAATTTATCTAAGCCATAGTTATTTGCTATA 1514 30 100.0 36 .............................. ACTGAATTTGCAGATATAAAAACTGCAAACAAGATC 1448 30 100.0 35 .............................. AGAGGCGGAACTCGGAATAACAAAAGCACAAGCTC 1383 30 96.7 36 .............................T ACCCTTATAAGCAGAGCCGCTTAAAAGCGCATAAAT 1317 30 93.3 37 ......................A......T AAGACTCCCGCCCCAACACCTGTAGTATCTATAAAAA 1250 30 96.7 36 .............................T TCACCTAACTACCGCGGGTGGGGCGTTTAGCGATGG 1184 30 100.0 36 .............................. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 1118 30 100.0 36 .............................. AATGCCTCATATAAACTATCATCTAACAGTTTATTT 1052 30 100.0 36 .............................. AAACACTACACCACCAATTACCCCTAATAACACTCT 986 30 100.0 36 .............................. TCTCCCACTATGGTAAAATCTCCGTCGAATTTTAAA 920 30 100.0 35 .............................. ACTTTATTCATTTATTTATCCTTTATTTTTTTTAC 855 30 100.0 36 .............................. TATTTAGGGAGAATAACATCATTTGCCGGATTTACT 789 30 100.0 36 .............................. ACCTAAACAAGAAATTATATCTCCTAATATTCAAAA 723 30 100.0 36 .............................. AAGTAAGGATTAATTTTGTCTGATAGTTTTGTTAAT 657 30 100.0 35 .............................. TATCTTTTGCATTTTGTATATTAGGCGCAGGTTGA 592 30 96.7 35 .............................T ATATGACCCTTAGCTACATAATTTTTATTAAGCTC 527 30 100.0 36 .............................. ACATACTGCAGAGCTTTTTCCAGGTCTTGCACACCA 461 30 100.0 36 .............................. AGGCTATGCGTAAAAACTTCTACTGGGTAAAAAATG 395 30 100.0 36 .............................. CTGATATCTGTTTTTACGGTTTTTTTAAATTCATCT 329 30 96.7 36 ...............G.............. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 263 30 100.0 36 .............................. CGTTCAGCTTCCATTGACAAACCACCTTTTAAAATA 197 30 100.0 36 .............................. TTTCTTGCGAGATCATTTACGTGGCATGGGCTTATA 131 30 100.0 36 .............................. TTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCCA 65 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 32 30 99.3 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TATTCTCATTTAAATTTAAATTATTAAATTTAGATAATTCGAATCCAAATAATTCTAAATTTAAATCCAAATAATTCTAAATTTAAATTCAAATAATCAAATTTTAAATTTAAATAATTAAATTTAAATAATTAAAATTCAAGTTCATATTAATAAAACTATTTACACACCAACAATCACAAATTTATATTTTATATTACATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAAACATAGATAAATAGTTTAAATTTAATGTTTTTTATGATATTTAACTTATTATTGTTATTTTTTAAATTTAGATTGGAAAATAAATTTATTTTTATTATTTATAGCTATATTATATATAAAACAAATAATCCATTTTCAATAGTTTTCAATAGTTTTCAATAGTTTTCAATAGTTTTCAATAGTTTTTTAAATTTATTTCTTATTTTAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATG # Right flank : CTTGTACACAGGGTATGTAAGATCTGTTGTAATCTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //