Array 1 688076-690860 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMV010000001.1 Methanococcus voltae strain C4 Ga0416755_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 688076 31 100.0 36 ............................... AATTCCTGGTAATATATATAGTTCTGCCACCACTGC 688143 31 100.0 36 ............................... GTATCTCTAAGGTACAGGCTATTTTTTTATTAAATT 688210 31 100.0 36 ............................... ATTATCTTGACTACCAAGTTATAGAAATTGCATTAA 688277 31 100.0 36 ............................... ATATACAAACAAACTCACCGCATATATATCTATCGC 688344 31 100.0 36 ............................... TTTATCATACTTATAATGTTTTTTATTGCAAAGTAT 688411 31 100.0 37 ............................... CAGAAATAACCAAATTAGAAAATCTTAACGGATTTAC 688479 31 100.0 36 ............................... TTACTTATGGGAGGTTCAGCACTTGGCGGTTTAGGA 688546 31 100.0 37 ............................... TTTTCAAGTAAAGGATTGTACGACGCTTTCATAAATA 688614 31 100.0 37 ............................... TTAGCGGTTTTAAATGGGTCTGGTGGGGTAACTATTC 688682 31 100.0 36 ............................... CGCATTACAAACGAAGCGATTAATGAAATGTCAATA 688749 31 100.0 36 ............................... ATTTGCAAGTATTAATCATGGGTAAGGAAGGTTCTG 688816 31 100.0 38 ............................... ATCCAAAAAAGGGACTGGAACGTGGCAAGTAATCTCAC 688885 31 100.0 39 ............................... TGGTCACATGGTAGTTACATCACCAAAAAGACCATAACA 688955 31 100.0 36 ............................... TTGTACAAAAACCAAAACAACAGATGGCCCATCATT 689022 31 100.0 36 ............................... GTAAGTAAAGTTTTAAATGTTTTAAAATGTCTTTAA 689089 31 100.0 36 ............................... TAGCAGCGTGGAATAGAAACTGAATAACCTGTCTGT 689156 31 100.0 35 ............................... TAATTTAATATAATCTCTCTAAATTAATATTTTTC 689222 31 100.0 36 ............................... TGGAGTTTTCAAGCTCTGAAATAACTGTAAAACGTA 689289 31 100.0 39 ............................... CATATGGTGTCTTATTCCTATGGCTTCTTTATCAGTTAA 689359 31 100.0 36 ............................... ACCCCTAATCGAAATATATACGTAAAATACAATGAT 689426 31 100.0 36 ............................... AAATTAATATTTTTCGTGGGTTTAAAAGAATTCAAA 689493 31 100.0 36 ............................... TATGTACTGCGGTATTGTCTGCAGCGGAGAAGGAAG 689560 31 100.0 36 ............................... AATTTATTTAATTTAATTTTAGTATTTTCTATTTGT 689627 31 100.0 35 ............................... ATTTTGAAAACAAAATCATATACCACCGATAGCGA 689693 31 100.0 39 ............................... TGGTATCTATTATCATTTCATTACTATCATAGTCTAAAC 689763 31 100.0 39 ............................... TCAACCGAACATAATCTATTATTAAAATCCCAACTTCGT 689833 31 100.0 34 ............................... TTGGATTTAATACCTTGGGATTGGCTTAATCCTT 689898 31 100.0 35 ............................... GATGAGAGCGTACTTCTAAATGTATACCGAGCTAA 689964 31 100.0 35 ............................... TTGCAATAGGATATAAAGCCTGTTCTATTGAAGAA 690030 31 100.0 36 ............................... TTTTCAATTGTAACATCTACGCTAACCCAAGCGTCG 690097 31 100.0 35 ............................... TAGTAACCCTCTTAGATTTTGTGTTTCAATCCACA 690163 31 100.0 36 ............................... TATAATTTGCCCGAATCAATTAATAAAAATCTACAA 690230 31 100.0 35 ............................... TAAAATTGGAAATGTTGTATTGTCATACTCTATAT 690296 31 100.0 37 ............................... ATATTAAGTTTAATATAATCGAATTTATTTAAATTAT 690364 31 100.0 35 ............................... TTGGGTGTTATATGTATATCAAATATACGTGCGTC 690430 31 100.0 34 ............................... CTTTAATAAATCATACAATACAAAACAATAATAA 690495 31 100.0 36 ............................... TTTACTTGATAACTGCGATAGCACAAGTGCGAAGTT 690562 31 100.0 34 ............................... AATATATTACTGCGCTTTTAGAAAATCCTAAAGG 690627 31 100.0 39 ............................... TCTCACTTGCTAACTCTGAAACGCCTATTCCTGTGGTTT 690697 31 100.0 36 ............................... GCAATGATTATTGTATTGGAAAAGAAAACAGACCAT 690764 31 100.0 35 ............................... CTACCGCACAAACTACAACACCAGCAGCTACAACC 690830 31 93.5 0 ............................T.T | ========== ====== ====== ====== =============================== ======================================= ================== 42 31 99.8 36 GTTAGAAATAAGACTATAGTAGATTTGAAAC # Left flank : GGGTTAAAAAATTTAATGGATGAAGATTACGATAGTGTTATAATTTTTAAGAATAATCATTTGAAGTATATCGATAGACAAATATTAGGTGTCGATAAAAATGAATTATCTGACATATTGTGATATATTATCTAATAAACCTAATATTTTTTTATAAATTAAGTTTTTAAAGTAATGACTTGTACCATAGTACCCATACTTAACCATACGTTTGTCGCATATATGGGATATATTATAAATTATTTAAATATTTAGATTTAATAATTTAAAGATTTTATGGTTTTTTAACATATTATATATCTCATTATTTAAATTAACTTGTTATTTAACAATTATTTGGTATAATTTGGTAAATTATATATTATTTAGGGAATATATCAATTAATAGCACATCTCGAATCGTATATAAAAGAAAGGTAAATGGGCATTTTCGAGATTTAAATCTTTCAAAGAAACGTTTTAATAAGTTATTTATAATAAAAGAAGGAAATATATGACGT # Right flank : TTTTATATCTTATTAAGTTCCCATCAAAGGATTTTATGAACGAAGTGAATAAAAGGGTTTGGTTGAAAGCCCAACTGCCTTTGAATAAATCTTTCAGATATATAACTCGCCGATTCACGTTGTCTATGGACGATGGCATAACTTCATAGATTAGATAATAGGGCATTTTGATGAAACTTTTTTTAAAAGTTTCTTAGAAATAAGACAATTCTGAAGATTCAAGGATTGAAAATTTAAGTGAATTTTTGCAAATTAAATATTTTTTTAGTGAGTAACTCATTAATTTTTTAAAAATAATTTTTATAATATATACTAAATTCATATTTCAAGCGATTTATTAAATTATATCAAAAACTAAATAAACAAAAAGTTACTATATTTTACTAATTTTATTGATAATTAAATTATTTATGAATTATTGAGGGATTGGTTTATATGGGTAAAAAAATTCCGAGGAAGAATGGATTAGTTGGGCAAAGCGTGATTTAAAATATAAACGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAAATAAGACTATAGTAGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 2428-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMV010000010.1 Methanococcus voltae strain C4 Ga0416755_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================================================================== ================== 2427 37 100.0 35 ..................................... CCTCTTTTTATAATAATATATTATTCATTACCATC 2355 37 100.0 35 ..................................... TATCTTCTTCTACTTTTCCATTAGGGTTGCTAATA 2283 37 100.0 36 ..................................... TATTTGCAATTGCAAGTTTTTGCTTTTGTATAGAAA 2210 37 100.0 34 ..................................... TTTTTTCATAATCGGAATTTGATAAAACCAATGA 2139 37 100.0 36 ..................................... TCTTCATCGTTTTTTATTTGCCCAAGCTTATATAAG 2066 37 100.0 36 ..................................... TAAAAAGTACAACGGGACTAAAAACCCGTTAATATG 1993 37 100.0 35 ..................................... ATAATGATATTAGTTTTTCTAATGTTGGAAAACTT 1921 37 100.0 35 ..................................... TAAACCGTACCCTCCAACCCTTGAACTTTGATGAC 1849 37 100.0 37 ..................................... ATATATTTTATACAATATACCCTCAAATATGAATAAA 1775 37 100.0 35 ..................................... TTCCACCTTATACCTCGTTTCCATCATTTTCATAT 1703 37 100.0 37 ..................................... TCTACCACTTCGGAAACTATTACCCATTCTGTGCCAG 1629 37 100.0 36 ..................................... ATATATTTTTGATAGGAATAATTTCCTTTTCCGTAA 1556 37 100.0 33 ..................................... ATATTTAAAGTTTTGGATATCTCATTGATAGGA 1486 37 100.0 36 ..................................... GGTGGTATATCTTCTATTTTACATATTTTTTCATAT 1413 37 100.0 35 ..................................... GGCACTTGAAAAATCAGTGTAACCCCAAGCCATAT 1341 37 100.0 37 ..................................... TAAAATCTCCCGAGGACAATTACACGATTATACAAAA 1267 37 100.0 35 ..................................... CCTTGATAATCGTTCAATGAACCAGGTGCAGATAA 1195 37 100.0 35 ..................................... AAAAAAGGTGACAAAATGAAAACTAAAACAAATAT 1123 37 100.0 39 ..................................... CAAACTTGAAGTTGTTCGGTCAGTGTATTGATATCATGT 1047 37 100.0 37 ..................................... ATTATTCGCTTCATTAGAGTTATTTATGATTTTAACT 973 37 100.0 37 ..................................... TAAGTATTATAATCAAGATAAAACACTGTTGTACGTT 899 37 100.0 37 ..................................... GGTGATGAGTATATTGGTATAATAACTGATGGAAAAG 825 37 97.3 101 ....................................G CCCAACTGCCTCTGGGCGATTGGCATTTAGTCAAATCGAAGATTTGATATTTTTATTACAAAATATGTCCATCAAAGGATTTTATGAACGAAGTGAATAAA 687 37 75.7 35 AGGGTTTG.T........................... ATCCACATAATATGTATTCCATATTTGTATAATCT 615 37 100.0 37 ..................................... ATTTATAATTCAGGAATTTTACACCATCAGTCGTGTA 541 37 100.0 36 ..................................... CGTCATTAGCGGATATTATTGAAGAAGATGTAGTTA 468 37 100.0 36 ..................................... TACTTTGCAATAATATCCCTCACTGAAAAAATAATA 395 37 100.0 37 ..................................... AGGCAGTTACGAATTTTCTTTCCTTGTTTATAGCTAT 321 37 100.0 39 ..................................... GTGGTGTAGGGTCACCTGCAGGAGGGTTATTTGGATTTG 245 37 100.0 38 ..................................... ATTGTTGTCGACTTTCCTATACCCGGGTCAGTCACCCA 170 37 100.0 38 ..................................... ACCGTGTCACAGTCTAATGTTTTAGAATGTAAGTAATC 95 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================================================================================== ================== 32 37 99.2 38 GTCACAGTGCATAATCCATTAAAACAAGGATTGAAAC # Left flank : TAATTCGTATATAGAAGTTTTAAAAGGCAAATATCCTGAAGCTACTAAATACGAGCGTAGATGTTTGGATTGTTGTTATAAAAACATTTGTCCAAGGTAATAATGGTAATACTTAGTATGATTTTTACGTGACCTTTGTAATAACGCATTTCAAAATCCAAAATTATTAAGCCCATTTTGAGCTCCTTTTTTTAAGGTTAAAAAATTTGGAGTTCTTTATGAGCTTTATTTAATTCATGTTCTTTATAAAATAGTTGGTTCATTTTGTATAGCTTGTTTATTAGTTATTAAGTACCTTGTAGTTATTAAAAGAGTTACTTTTTACTTATTTAACTAACCCCGAATTAGATTTTTAAAATACAAATGATAACTTTTATATACTGCCAAAAACAAACCATATATTGTTGAATTATATTATTTTTGCGATACGGTTAAATAGAGCTTTGTTTTATCCATAAGTCTTAATTTGTACTTATTGATGAGTAATAATTTAACTACGT # Right flank : CACCGTGTCACAGTCTAATGTTTTAGAATGTAAGTAATCGTCACAGTGCATAATCCATT # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGTGCATAATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 2676-5519 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMV010000002.1 Methanococcus voltae strain C4 Ga0416755_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================================================================================== ================== 2676 37 100.0 35 ..................................... AAGCAATAAAAACATAATTAAGCAAGCAAATCAAA 2748 37 100.0 36 ..................................... ATACAACACCAAAGAAACCAAAGGAACCTAAGGCAA 2821 37 100.0 37 ..................................... TATTCTTCTTCTGTCATGTAATTAGTGCTTGCGAAGT 2895 37 100.0 34 ..................................... AGGATGACCAATTATCGGCTACATGTACTAAAAA 2966 37 100.0 40 ..................................... AATAGTCCCGTACTCTTGCCGTTTCTTTTGCTGGACAGTA 3043 37 100.0 38 ..................................... AGAACTGGAAAAAGTTATTTGATAGAATTCAAAGAAGA 3118 37 97.3 37 .C................................... ATAATATCCGCTAATGACGTAAAAGCCATGTAATCAC 3192 37 100.0 33 ..................................... CTACAAATCTTGTAATAACATCAAGTAATTACG 3262 37 100.0 36 ..................................... TGAAGTTTGATAACTTTGAAGAATTTGAAACAGAGT 3335 37 100.0 115 ..................................... TTGATGGCAATTTCTATGACTTGATAGTCGAGATAATTAGGATGATTTTGTTTAACATTCTTTATTGTTTCAAAAAATAGTTTTTTCTTACTTTCGGATAATTCATATTTTTTAG 3487 37 100.0 37 ..................................... CAATATTAACAAAGAAACTGAAAGAAGAACCAATAGC 3561 37 100.0 35 ..................................... CCCTTACTGTCATAGACGACAGTTTCTTTAGATAA 3634 37 100.0 35 ..................................... TTTTCTTGTTTTGTTTTTGATTTCTTTTGCGTAGA 3706 37 100.0 38 ..................................... AGCCCTTTGGAATAATGTAATAGGCAATTGTAAGTCCG 3781 37 100.0 44 ..................................... TACAAATATCGTTTATACTTCCAGAAGACCGGCAAAACTCAACA 3862 37 100.0 39 ..................................... AAACTACGGGAGAAAACAATTATAAAAAGCTTAATAGCT 3938 37 100.0 37 ..................................... CAACTGATGTAGGGAGCGTTAGCGGAGAACGAACCTT 4012 37 100.0 36 ..................................... TTACATGGGTAAGTACATCAATTATATTATCATATA 4085 37 100.0 35 ..................................... AAGCAAACTTAAAAATGTTTGTAACTGTAATAACA 4157 37 100.0 34 ..................................... TTTTCTCAATCAATACCACAATAGCAACGGCAAA 4228 37 100.0 34 ..................................... TAAAAAATAATCCTAATGTATCGGAAGAAGAGAT 4299 37 100.0 35 ..................................... CCATTCACATCACCTTATACTTCTTCTTTTTCTTC 4371 37 100.0 36 ..................................... TCATATTCTAACTGCATTAGCTCATCGCCAATTTTA 4444 37 100.0 36 ..................................... TAACTATCAATTAGGGATATAACGCCCTCAAAGTCT 4517 37 100.0 34 ..................................... TTTTCTCAATCAATACCACAATAGCAACGGCAAA 4588 37 100.0 36 ..................................... ATTCACCTCTTAATTCTAATTAATTATTTTCACTAT 4661 37 100.0 38 ..................................... ATTTGCCATTTGTACCTCTTGGAGCTTGTCCACGGGTA 4736 37 100.0 36 ..................................... TTTTCAATATATTTGATACCATCTTCGTTTAAACCG 4809 37 100.0 40 ..................................... TTGCTTTGCTCACGTGTAGTAGTTCTGTTACTAATGTATT 4886 37 100.0 36 ..................................... TTGGTTCTTTGTAAGTCAGTCCACCGAGTTTTAAAA 4959 37 94.6 37 ...GA................................ TAAAATAGTTAAATATGTATTCAATGATAAAAAGAAA 5033 37 100.0 37 ..................................... TGAAGTTTTTTCCAGATAAAAGCTGGGATACAATAAC 5107 37 100.0 47 ..................................... AACCACGCAACCAATTTAATGAACTTTTCTAAAGGGGAAGTTAGCAA 5191 37 100.0 35 ..................................... TGTCCTTTTATGATATCTTCTAATGAGTGGATTGC 5263 36 97.3 35 ..................-.................. TCCCCACCCGTGCCCGTGTTTCCTGAATTTGCCCC 5334 37 94.6 40 ...GA................................ ATAACCTTATTGAATTTATTATTATTAAAATTATTGATAG 5411 37 91.9 35 ...GA.....A.......................... AAATAATTGGTTTTTTATTAATTATTCCTTGAATA 5483 37 89.2 0 ...GA.....A.........................G | ========== ====== ====== ====== ===================================== =================================================================================================================== ================== 38 37 99.1 39 GTCACAGTGCTTAATCCATTAAAACAAGGATTGAAAC # Left flank : TTTCATACCTGACAAAACATTTATTTTGTCCTTTTTATATATTTTAACAATATATTAAAGGACTTTATCTATTTTTTTAAAAAATAAACGTTGAAATTATGTATAGTAATACTTAGTATGATTTTTACGTGACCTTTGTAATAACGCATTTCAAAATCCAAAATTATTAAGGTCATTCTGAGCTTCTTTTTTTAGGGTTAAAAAATTTAGTAGATACTATGAGATTTGTTTAATCTATGCTATTATCTATATGTTCAATTCATTCTTTATTGTTTGATTATTGGTTATTAGTTACTTTCTATTTACTAAAAGAGTTACTTTTTAGTTATAAAACTAACCCCGAATTATATTTTTAAAATACAAATGGTAACTTTTATATAGAGTCCAAAACAAACTATATATTGCTGAATTACATTATTTTTGTGATACGGTTAAATAGAGCTTTGTTTTATCTATAAGTCTTATTTTGTACTTATTGGTGAGTAATAATTTAACTACGT # Right flank : GCCCAACTGCCTATGGGCGATTGGCATTTACTCAAATCGAAGATTTGATATTTTTATTATAAAATATGTCCATCAAAGGATTTTTACGAGTAAAACGAGTAAAAAAGGTTTGATTGAAAGCCCAACTGCCTATGGGCGATTGGCATTTACTCAAATCGAAGATTTGATATTTTTATTATAAAATATGTCCATCAAAGGATTTTATGAACGAAGTGAATAAAAGGGTTTGATATAATCCATTAAAACAAGGAAAATAAAAAAAAGTATTTAAGTATTTTAAGTTAATATCTTCTTTTATAACGTCTATATTTAGAGGTTAATGAACTTCTATTTTGGTATAGTATGATTATTAATCCTAATGATAAGATGCCGACATATCCAAATGGTATGTTTTGTATTAAGTTGTTTAATTGTTCGCCAAATGGTATGTTTTGAACTATATTAGCTATTCCTGTGTTTACAGAGTCTATAACTCCACCATCTCCAAAGAATGGAACTGT # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGTGCTTAATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //