Array 1 142410-140407 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLCX01000057.1 Acinetobacter baumannii strain ABBL017 contig-40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 142409 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 142349 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 142289 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 142229 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 142169 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 142109 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 142049 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 141989 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 141929 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 141869 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 141809 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 141749 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 141689 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 141629 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 141569 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 141509 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 141449 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 141389 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 141329 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 141269 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 141209 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 141149 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 141089 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 141029 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 140969 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 140909 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 140849 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 140789 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 140729 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 140669 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 140609 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 140554 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 140494 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 140433 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 34 28 98.3 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : AAGAAGAAACATACGCTAAAAGCACAAGTGATCTATCATCCGAACAGCAAACAAATCATAGGGCTAGATATATCGAATGGCAGTCAGCATGACATTAAATTGGCAAGAAGAACGGTTAAAAAATTCAAACATTGTAAATATGTTATGACCGATTTAGGGTACTACGGATTAGAGCAAGATGGCTTTAAATTATTGATGCCAATAAAGAAAAAGAAGAATTTACCCTTATTTGATGTTGAGAAAAAGTACAATAAAATGATTGGAAAAATACGAGTTGTGATCGAACATATTAATAGTCAATTGAAAACATTTAGAATATTAAGTGAACGCTATCGAAATAGACGGAAAAGATTCGGTTTACGCATTAACTTAATCGCTGCACTGGTAAATCGGATGAACTTGCAATAACGACTTTCGCAAGAGGTCTATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCT # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9-1057 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLCX01000089.1 Acinetobacter baumannii strain ABBL017 contig-76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 9 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 69 29 100.0 31 ............................. GATTGAGGCGATTTTTATCGCGGACATTGCC 129 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 189 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 249 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 309 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 369 29 96.6 31 ............................T GCAGCTACTCGACATGTTGGTAGGGCAGATG 429 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 489 29 100.0 31 ............................. GATTGAGGCGATTTTTATCGCGGACATTGCC 549 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 609 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 669 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 729 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 789 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 849 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 909 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 969 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 1029 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 18 29 96.8 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : GTCAGATGG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACAAAAATCCTAAATAATTGATTTTATAATTGCTTTTTCGGCATATAACATGCTGGTATAACTCATGTATAACATTTAATTTTGATTAAGTATGATTAACAACAGTTTCTTTTTTGTTCAAGTCCGACTATAGGAGTTGAACTCATTTTGAAAAATTCTAGGCTCTTCCCACTTTTATTTTAGCTTACTATAAAGGTCAATATAAAAATTATGATAGAAACGCGTTCTCTTTCTCTTAATTTTAGGGCTTACAACTGAGCTGTATGTAACCGAAGTTTCCTCTATTTCTTCCTCAATTAATCCTACAACTTCTAAATCTTTGAAGTCACTAACTAAAAGATTTTCAAATTCCCAATATTTGTTGTAATCAGTGGCATCTTTTGGCAATCCTTCACAAGGTATGGATTGTCCGCGGAGCCT # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4291-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLCX01000041.1 Acinetobacter baumannii strain ABBL017 contig-2000074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4290 29 89.7 31 ....G.......CC............... TGTAAGGTACTGCGATTAGGTCGGGAGTATT 4230 29 89.7 31 ....G.......CC............... TATTGTGAGCACCTTGATTGCTGTGCGCTGC 4170 29 89.7 31 ....G.......CC............... ACAGCGGGAAACTTGAAAGTCATTGCGAAAT 4110 29 89.7 31 ....G.......CC............... GATTGCCCCCTGAGGAAACTGTATAAAGTCC 4050 29 86.2 31 ....G.......CC..............A AACACCAACTAAGCCATTCCCTATTCAAAAA 3990 29 86.2 31 ....G.......CC..............A TGAACTTTTAATGGATGCATGCGCCGCCCAC 3930 29 86.2 31 ....G.......CC..............A CGAACAACGATAATTTGGAATACACGCTCAT 3870 29 89.7 31 ....G.......CC............... CAGGAGAAAGATCGTTCAAAAGCTCAAAACC 3810 29 89.7 31 ....G.......CC............... GAAAGTTTTGATATCCACTCTGCTGTTTCAA 3750 29 86.2 31 ....G.......CC..............A GATGGTAAGAAAATTATTGAGTCTGGAGACA 3690 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 3630 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 3570 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 3510 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 3450 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 3390 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 3330 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 3268 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 3208 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAGTAAATGA 3148 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 3088 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 3028 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 2968 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 2908 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 2848 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 2788 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 2728 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 2668 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 2608 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 2548 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 2488 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 2428 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 2368 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 2308 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 2248 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 2188 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 2128 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 2068 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 2008 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 1948 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 1888 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 1828 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 1768 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 1708 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 1648 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 1588 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 1528 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 1468 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 1408 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 1348 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 1288 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 1228 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 1168 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 1108 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 1048 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 988 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 928 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 868 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 808 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 748 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 688 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 628 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 568 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 508 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 448 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 388 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 328 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 268 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 208 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 148 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 88 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 72 29 93.1 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : A # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //