Array 1 139715-139231 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQUO010000004.1 Corynebacterium diphtheriae bv. mitis strain 06-15 NODE_4_length_139714_cov_39.239249, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 139714 36 100.0 28 .................................... GCAGCAATGGAACTAGCGCAGACGATAC 139650 36 100.0 28 .................................... TTCGTCTTGTGCTTTCAGATGCGCTGGC 139586 36 100.0 28 .................................... TCATTACGCTAGTTGCGATCACGGTTGG 139522 36 100.0 28 .................................... GCAGCAATGGAACTAGCGCAGACGATAC 139458 36 100.0 28 .................................... TTCGTCTTGTGCTTTCAGATGCGCTGGC 139394 36 100.0 28 .................................... TCATTACGCTAGTTGCGATCACGGTTGG 139330 36 100.0 28 .................................... GTCGGTGTCCTCGAAGGCAGCCATCGCG 139266 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 8 36 100.0 28 GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : | # Right flank : AGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 512-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQUO010000008.1 Corynebacterium diphtheriae bv. mitis strain 06-15 NODE_8_length_106612_cov_39.830136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 511 36 100.0 28 .................................... GGCGGCGGCGTGGAAAATAGCTATTTAA 447 36 100.0 28 .................................... TATCCCGAAACTGTCAAACCTTTCAGTC 383 36 100.0 28 .................................... TCATCCATGTGCGGGTGCAGTCCGTGCC 319 36 100.0 28 .................................... TGTATTCCCCACCCTCGATAAGGGTGTT 255 36 100.0 28 .................................... GCTGTTGCCATCTCTCGTTGAGATTCGG 191 36 100.0 28 .................................... AGCGAGCAATCGCACAATTGAAAAGAGA 127 36 100.0 28 .................................... GCAGCAATGGAACTAGCGCAGACGATAC 63 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 8 36 100.0 28 GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : ACACCATTACTTCATCAAGTACTGCGTCAGTGACCGCGGAAATCGTCTCATGGGAGATGTCCACCCGCATAACAGTGGCCATATGGTGCCTGATATCGCGCACGGTCATCCCACTGGCATACAAGCTCACGATCATGTCATCGACATCCGTTAAACGCCTCGAGCCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCTTGGGGACGTCTACGGTAACTGGCCCGTCGTTGGGATCAACAGTCTTTAGGTAGGTGCCGTTGCGATAATTGTAGATCCCAGCAGCAGCTTTAGCTTCGCGATTTCAGCATGAGCAAGCAGCTTTTCCTCAGGTCGCGTCAATCTTGGCCTTATCAGCCGAGTCTCGTCTTACCACAGTAGTCATTCTGACTTATCTCCTTATGCGGAATAGAATCCCAAACACAAACCATCAGGCACCCTCATTCCCAAAAACCCTGATAAACTTCTCCTACGGTTCATCCCCGCTGGTGCGG # Right flank : CTTCGTCTTGTGCTTTCAGATGCGCTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //