Array 1 8315-12304 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLRO01000034.1 Tetragenococcus halophilus strain YA5 sequence034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 8315 32 100.0 35 ................................ TGGAATGTATTTCATTATTATACAATAATCGCCCT 8382 32 100.0 36 ................................ CATTTAGTATCTGTAACCTTGATAAGGGTTTTTAAA 8450 32 100.0 37 ................................ AACAACAAAAATTTCATTACTGCCTGCGGGTTGAATC 8519 32 100.0 36 ................................ CTGTAAGTAAAGGGCTTGAATATAACGAGCTGTCAG 8587 32 100.0 36 ................................ TTGAATAACAGCACCTAATGCAGCACCTAAAATACA 8655 32 100.0 34 ................................ ATTAGCGGTAGAAGGCAGAGTAACTATGATTATT 8721 32 100.0 35 ................................ ATAATGACAATGCCCATAAAAATTATTGCAATAAT 8788 32 100.0 34 ................................ TACCCCAGACACCGTAACATCTTCTAAGTAAACG 8854 32 100.0 36 ................................ TTCTTGCGTTCGTTGAAATTCTTTTAACTCTCTTAG 8922 32 100.0 35 ................................ TTTTTATTGGTCTTTTTCATCAGAATTATCGCCGC 8989 32 100.0 35 ................................ TTCGTTGATATGATTTCTAAGCGAGCCGATTTTAC 9056 32 100.0 36 ................................ TCGCTTTGTATAAGGCAACTTACTCACGCCCGAACC 9124 32 100.0 36 ................................ ATATTGATCTTTGTTACGAACATAAACATGTTTATC 9192 32 100.0 35 ................................ TTCAACCATGTAATTTTGAGCAAACCACAAGTCCA 9259 32 100.0 36 ................................ AATAGTTTGTCAGGCAGTGGATAAGTAAACGTATGC 9327 32 100.0 35 ................................ TTTTAATGATATAGGACACATTCGAATCAATTTCC 9394 32 100.0 34 ................................ ATAATGACAATGCCCATAAAAATTATGGCGATAA 9460 32 100.0 34 ................................ ATCATTTTGTTGCTGTGTCTGTTCTTTCTGGCAA 9526 32 100.0 35 ................................ ATATTCTTGCGCTAATACTTGATAGTCGGCTTGTA 9593 32 100.0 35 ................................ TTAAATAATGTAAATTTTTCTTATAATCGTGTTGA 9660 32 100.0 35 ................................ TATCCCTCCTTGGATACCAAATTCATTAAGCAATT 9727 32 100.0 35 ................................ AATTGTAGCGATACTATGTGCTAATGATTTTTCAG 9794 32 100.0 37 ................................ AGGAAATATCCAAAAATTGGCCGATTATTTCGAAGTT 9863 32 100.0 33 ................................ TTGGTATATTCGTTTAAATACTGATTTCATAAC 9928 32 100.0 34 ................................ TGCTGTCTTCAAGTTCATCACCGCAACGTTAGGC 9994 32 100.0 35 ................................ TTGTGCTATCTTTTCAAATTCTACTGGTCGTGTAT 10061 32 100.0 34 ................................ ATGTCAGATTTTACGCCCGGTAAGAATTTACCTG 10127 32 100.0 37 ................................ TAGTTTTGTCCAACTTAGGTTCTTGCTCTGTAAAATA 10196 32 100.0 36 ................................ ATCATTCACGCCCCCAAGAATCATAGATCGTAATTT 10264 32 100.0 34 ................................ AATAATTTTTGTCAGCGATGCAGATTTTGAAGGT 10330 32 100.0 37 ................................ GTTCTTGCTAACTCGATTTGAACTGGACTGCGAGCAT 10399 32 100.0 36 ................................ ATTGCTTCCCCACAGTTTACAATACCTGTGCCACTA 10467 32 100.0 33 ................................ TATTTCCTCGAAAGCGGAAGCTAGCGTAGGAAA 10532 32 100.0 36 ................................ GATATCTTTCGTGGCACTGTCGCCCGCTTGTTCCAG 10600 32 100.0 36 ................................ ATTGTGTACTTTAAGAGCTTCTCGAAAGAGTTGCTC 10668 32 100.0 36 ................................ ATTAAACGAAGGTGCGTCTCTGACTTCTGCCAGAAA 10736 32 100.0 35 ................................ TTCTTGAGTGTCCATCAAATCCGCTGCATCATAAA 10803 32 100.0 34 ................................ TTGTTTGAAAAAAATCAACATCTCTTAATAGTCC 10869 32 100.0 35 ................................ TCTTAGTCCTCCTTATTCTTTGCCCTATTGTATAG 10936 32 100.0 36 ................................ TGGGTATGTTGTTACACCGTTAGAAGTTGTACCGTT 11004 32 100.0 35 ................................ TGAAATAAAAAAGGTCATGATTTTTAGTTGCATAA 11071 32 100.0 34 ................................ CAAATCGGTATATTATACTTTGCACAATATTTTT 11137 32 100.0 36 ................................ CTAATTTTAATTACTTTTTTGAATCGATTTTTGACG 11205 32 100.0 34 ................................ TCCTGCGTCTTGCCCAGAAATCCAAGAGTAGTAC 11271 32 100.0 36 ................................ AGTACATCCTTTCTATAATGGCGTTTATAAAGATAC 11339 32 100.0 35 ................................ CCTTATCGTTCTGCAAACTGTTATCACTATTAGAA 11406 32 100.0 34 ................................ TTTTAAAAATTTTGAAGTAAGCAACCAAGAAACT 11472 32 100.0 34 ................................ CCAAAAATCAATGAAACAAACTTGTCCAATGTTG 11538 32 100.0 36 ................................ AGTATCATTATCGGTAATTTCTTCTGCCACGTCCGA 11606 32 100.0 36 ................................ TGAACGTATAAGCTCCGCTTCGGTTTTGTTGTGTGC 11674 32 100.0 34 ................................ TAAAAAGTTTTTTATTCCTTTATTCATAGTGTTT 11740 32 100.0 34 ................................ ATCTTATGTCTACGTTTTACCTCTTTAATCCTTC 11806 32 100.0 35 ................................ GTTAATAAGTACTTGTTCCCAAAAATAAATGAAAC 11873 32 100.0 35 ................................ AATTACTTATATAAGTAGGTGAAAAAAATGGAATT 11940 32 100.0 35 ................................ ACGGAAACCTCCTAAATCTTCGCTCAATGTATTAA 12007 32 96.9 35 .......................T........ ATAGCCTAATAGACTTTCAGGAATTACATAGCGAG 12074 32 100.0 35 ................................ TTTTCTTGAGCAAGAAATGCGTAAACTTGAAGACG 12141 32 93.8 36 ......T............T............ GTTTAAAGCTTATGCTAGCCCGCCAAAAGTAGAAGA 12209 32 93.8 33 ......T............T............ TTTGGGTATCAAGGGAAACAAAATCTTATAAAG 12274 31 84.4 0 .........-C........T.A..T....... | ========== ====== ====== ====== ================================ ===================================== ================== 60 32 99.5 35 GTCGCTCTCTTCGTGAGAGCGTGGATTGAAAT # Left flank : CCAAAGCAATCCGAAATGATTTGCCAAGTTATCCGCCTTTTATGGCGTAGGGGAGAACACTTATGATGGTTTTAGTTACTTATGATGTGAATACAGAAACAAAACAAGGAAGAAAACGTTTGAAACATGTTGCTAATTTATGTGTTGATTATGGCCAAAGAGTTCAAAACTCTGTTTTTGAATGTTCAGTAGTACCAGCAGAGTTTGTGGAATTGAAAGGAAAATTGGCCAACGTAATCGATCCGGAATTGGACAGTATTCGATTTTATTTACTAGGAAAAAATTGGCAAAATAGAGTGGAACAAATGGGAAATAATGATAGCTATGACCCTGATGAAGATGTTTTATTGTTGTAATGTTCATCGCGAATCGAGGTTACTCATAAATTATTCAGTCGGTTCGCACAAAATTAGCGCTATTTAGTAGAAACTAGTTGTTTTATTCCATTTAATAAATCATTTTCTGAATTTAAATTAGTGTGAAACCGCGTTTTTCCTGCG # Right flank : TAGTATAATAAAGATTTTGGAGTGTTAGATAAATAAAAAATTGTAGGAAGTAATAAACGAACTTTTTGCACCATTTTATCATTCCTAGTATAATAACTATGTTTTGGACGAAAATTTTAAATTAACCAGAATACATAGAAGATAGGAGCAATTCATAATGACTAAGAATTTTTGGGCAGAATTACCGAAGCCCTTTTTTATTTTAGCGCCGATGGAAGATGTGACAGATGTCGCTTTTCGTCATGTGATAAAAGAAGCTGGTGCGCCGGATGTTTATTTTACTGAATTTACCAACTCGGATAGCTATTGTCACCCGGATGGTAGGCAAAGTGTCCAAGGTCGCCTGACTTTTACAGAAGATGAAAAACCGATTGTAGCACATATTTGGGGAGATAAACCTGAATATTTCCGTGAGATGAGTCTTGGTTTAACAGAAATGGGCTTTAGCGGCGTTGATATTAACATGGGGTGTCCGGTTCGTAATGTGGTAAGACGCGGGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCGTGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2671-3491 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLRO01000075.1 Tetragenococcus halophilus strain YA5 sequence075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2671 28 96.4 33 .A.......................... TAAATTAAACGATGCTCAAGGAAGATTGGCAAG 2732 28 100.0 33 ............................ TATATAACATACACAGGCCCCAAGGAGCACAAA 2793 28 100.0 33 ............................ GACCAGCCAAAGCAATAAGTTCCTTTATTGTGG 2854 28 100.0 33 ............................ TCTGACTTCATGGAGGCGATGAGCTGGGCTTTA 2915 28 100.0 33 ............................ CCATACAGATTAGACTATATCTTCGCTATTTAA 2976 28 100.0 33 ............................ GAAGAAACGGCAGACAAGCGAAGCAAGATCAAA 3037 28 100.0 33 ............................ CTATTACTGCTATTGCTGCTAGATTGACTACTG 3098 28 100.0 33 ............................ AACAAAAAAATCGCACAATTCAAGATGACTTTA 3159 28 100.0 33 ............................ GAAGAACGAGACGAATGGTGTGCAGTGGGTATA 3220 28 100.0 33 ............................ CCAAGTAGGTAACGTTCTAAGTCATCGCCTACA 3281 28 100.0 33 ............................ TTGCACCTTTTTAGACGGGTTTTCCAATCAACG 3342 28 100.0 33 ............................ AGATTAAGTAGTGCATACGACCACGCTCTTTCA 3403 28 100.0 33 ............................ TCTTCCAGATCACTTTTTGCACTAGCTGTCTTA 3464 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.7 33 GGATCACCCCCGCTTATGCGGGAAAGAC # Left flank : AAAAAACTTGGATTTGTTTCATTGCTGATAGTAAAAATAGACTAAATAATAGACACAAAAGCGCCAAAACGTTATTCAGAAATGATAGGTTTACCTACTAAAAAGATGACGCTTTTTTCCACTTCATTATAGTCGTTGTGTAAAATGATAATATCGTTTTTGCAGTTTTTTATTACCACTAGTCCTCATTATCCAACCATTTTTCTATTGATTCATCAGTTATATATTCCTTTAGTGACAATAATTCTTCATTCCTTACTATATTATTTTTTATTCTTTCCCTCTCTTGTTCTGACAAAGAAACATCAAATGGAATTTTCCCATCTGCAACAATACGTTTAAAATACATAGTTATTGCCGCTGTCGTTGTTAAACCTAGTTCATCTAAAATTTGGCCTACTTTATCAGTAACTTTTTTATCAATCTTAACCTGAACAGTTTTGTTATCTTTTACACTCATGATAAAACACCCCTATTAATAATATTATCATTTCATTTTA # Right flank : CAGTTAAAGATCCCTATAAAAACAGTATTTTTAATTCATTGCTTTTAAAAATTTATTCACTTTTGTCGATAATTGATATATGATTTTTGCATCTTCCAAAGCACGATGGGGTACGTAGTCATCAAAACCATAACTTATTAAAGCCGTTTTTAACTTATAATCAGTAAGCAACATTTTTTCTCGTTTAACATAACGAATTAGATCATGAGGTTTATTTGATAACTGGAATAGGTCAAAATCCTTCAAATACTTATTCAAAAAGCGAAGATCAAAATCAATACCATATCCAACTATAGGAAAATCTTCTATGAAATCAACAAACTCTACTAATGAATTCTTTAATGGTTGCCCGTTTTTGGCTAATAAATCTTGAGTAATACCAGTTAACTTAGTAATATCTGATGGTAATTCCTTATCATATTTAATTAATCGATGAAAATTTGTTAGTTCTCCTCCATCCATTTTGACCGCTCCGATTTCAATAATCTGATTATCATTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCCCGCTTATGCGGGAAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //