Array 1 51144-53002 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAS01000025.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_2746 NODE_25_length_81815_cov_4.19152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51144 29 100.0 32 ............................. GCCGATATCGGTATTATATCTGGTATTATTTT 51205 29 100.0 32 ............................. ACGCCACTGACCTGGTGGCTATGTCGTTTGCA 51266 29 100.0 32 ............................. GGGACTTGTTAATATTTCTCTCACTGACTACG 51327 29 100.0 32 ............................. GGGGTTTTATGAGCAAGGAAGGGGGCGTCACC 51388 29 100.0 32 ............................. TTCGCAGCGAGCACGACGAGTGGTCTGATGCC 51449 29 100.0 32 ............................. CGCCGATCAGGAGAAGTTAAATAAACAAATGG 51510 29 100.0 32 ............................. CGAATGGCTCAACTTTGAAGAGTTCAAGAAAG 51571 29 100.0 32 ............................. GCCATGTTTTTCGTTTTTGCATTCATATAGTA 51632 29 100.0 32 ............................. CCTACAGCAACGAGGAATATCACTAAACGACT 51693 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 51754 29 100.0 32 ............................. CGGGCCATGTTCTTTTCCCTCTAAAAAATCCG 51815 29 100.0 32 ............................. ATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAA 51876 29 100.0 32 ............................. AATATCCACTTAAACACAACCATTATTCGCTA 51937 29 96.6 32 ............................C GTTGCTCAAAAAACTGAACGAGGGTAACTACC 51998 29 100.0 32 ............................. GCGGAGAATTATATATCGGAATGTTACAGGAA 52059 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 52120 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 52181 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 52242 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 52303 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 52364 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 52425 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 52486 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 52548 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 52609 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 52670 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 52731 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 52792 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 52853 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 52914 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 52975 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62128-63804 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAS01000025.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_2746 NODE_25_length_81815_cov_4.19152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62128 29 100.0 32 ............................. AGAAGAATTCTTTTGCCTGCGCGTCGTTCATA 62189 29 100.0 32 ............................. TAACTGACACTGAAAGAAATAACCCTCTGTGG 62250 29 100.0 32 ............................. CCGCGCCGGTGTGGCACCTCCACGAATCGTTA 62311 29 100.0 32 ............................. GCGCAAATACGCGGCGGTGCAGCTACCGAAGC 62372 29 100.0 32 ............................. ACGCCCTGCACAATAATTTACGGCGGGACACT 62433 29 100.0 32 ............................. TGCCACCGGCGTGCTCCATATGACGGGCGTTT 62494 29 100.0 32 ............................. AATTCAGGAATGTTTTGCGGGTAAATTTTGTG 62555 29 100.0 32 ............................. TCCACCGGGAAAATAGTCCAAATGGCTAACGC 62616 29 100.0 32 ............................. CGCAGAAGGCAGCGGGCAGTGTCAGCGCTGAC 62677 29 100.0 32 ............................. CACAATGAAGAGGGAACAACAAATGGACTCAG 62738 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 62799 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 62860 29 100.0 32 ............................. GTGCACGTTAGCCGCGTAGCTGAATTAGGTTG 62921 29 100.0 32 ............................. AGGCACGAAAAGCCATGGCCGCCGCAAAATCC 62982 29 100.0 32 ............................. GGCGAGCAGATAAACACCGAAAACCTGCACGC 63043 29 100.0 32 ............................. GATTTATCAAATGAAACTCTTCCACGGCAGCA 63104 29 100.0 32 ............................. CCCATCAAGATAAACATCATAGCGAGCACCTG 63165 29 100.0 32 ............................. CGGCCGAACGTTACGGCGACGAGGTCGAGAAA 63226 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 63287 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 63348 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 63409 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 63470 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 63531 29 96.6 32 ..................A.......... CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 63592 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 63653 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 63714 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGT 63775 29 100.0 0 ............................. | A [63802] ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCTAACAGACCGGAGGAAGTGAGGTGGCTTAACCATGGATAACCCGCGTTATCGCTACCACCAGCGCTCATAAATCCCGCGCCATCGCTAAACGCATTAAGTAATTTTTCCCGTAAAGCGGCGGGAAGAGTGGCGCTCAGAATAATAGCGCTACCGCCCTGGGCGGCATGGAAGCGCAATAAACCTTCCAGCAATTTAACCATATAACCATCATAGGCGTGCACTTCATCCAGCAGCAGGATTTTGTCGCGCATCCCTAGCAATCGGAGTGATTGATGGCGAAAAGGCATCACCGCCATTAAGAGTTGATCCAGAGTACCTACGCCGACTTCCGCCAGCAGCGCTTTTTTGCGTGAATCTGCAAACCAGGTATGGCACTCAGTAGTCGCGTTGCCATCATCACGGGCATAATCTTCAGCTATATTTTCTGTTGGCTGCCAGATGGATTGTCGGAAAGAGTCCGACATTTCTCGCCCACCGTGTGCCAGGATGAGCGATG # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATAGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //