Array 1 503359-503937 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPO01000001.1 Actinomadura hallensis strain DSM 45043 Ga0197561_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 503359 28 100.0 33 ............................ GCAAGAGGGGAGCAATCTCTTTCCCGTGCGTGA 503420 28 100.0 33 ............................ CCTGACTGAAAGAGCGAGGCTCAGTATCGCGCC 503481 28 100.0 34 ............................ CCCGCTGCCGGTGACCGGAGGAGGGGACGGGGGG 503543 28 100.0 33 ............................ CCTGACTGAAAGAGCGAGGCTCAGTATCGCGCC 503604 28 100.0 33 ............................ CCTATGGGGGGCTGATGACACAAGTTTCGTGGC 503665 28 100.0 34 ............................ CCCGCTGCCGGTGACCGGAGGAGGGGACGGGGGG 503727 28 100.0 33 ............................ CCAATCCGGATCGTGGCTCAGCCTGGCGAACAG 503788 28 100.0 33 ............................ TGCGCGCCAGCTCGGGCTTGCGGTGCCGTCCCC 503849 28 100.0 33 ............................ CGACAGGCCCTTGCAGTAGTAGTCGTAGGTCAG 503910 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 10 28 100.0 33 GTCGGCCCCGCACACGCGGGGATGGTCC # Left flank : TTCCTGCGAAGCGCATGGAGATCGAACGGCAAGCCAGCGCGCCGGACGCGCTCCATCCCGGCCTCGTCTATGAACTGAAACGCCGGGATGGCTTTCCCGAAGTCGTGAACCCCGCACAGCCAGGTGAACAGTCTTCGACCACTGCCCTCACCACCGCCGGCCACCCCGTCGAGCGCACGCCGAAGCGAGGGAGCCAAATAGCGGTCCCAGATCAGCTCCGCGACCGCCGCCGTGTCGAGCAAGTGCGACAGCAACAGGTTCGCCCGACCACCCGCACGCTTGGCGCTCTTCCCCCACAACGCACCCAGCTGACGCCGCAACGCCGAGTCCGCGCCGACCATAAGATCGGCCACACCCACTGGTGGCATCTCTTCATCCACAAGCGGAACAGTAGAAGATGCCCCTGACGAAAAGCGGCCACTCGGCTCTGCTCGCTCCATGAGTGCTAGCAACCGAATGAAAATCGCTCAGTCGTCACACAAAGCAGCAGGTCACGAAGG # Right flank : CGACACCGGCGGGCGCTGGCCGGACACGGCGCCGAGGCGGTGCGCGATGCGATTGCCGCCACGCTCACCACCTGGCCCCAGCAGCTACGCCGGTCACTGACCTGGGACCAGGGCGCCGAGATGGCCCAGCACGCCCAGCTGCGCATCGACACGGGCCTGGAGATCTACTTCGCCGACCCGTTCAGCAAGCCTTGTTCAAGGCGTTCAACCTGGAACTCCGCTGCAACAGGACCACCGACCGCGTCCACTGCCGAGTGACGATGGCCGGGCCAGTAATCCAGATCCAGCAGCAGGTCGTCCAAGCGGCGCTGGATTTCGCGAACGCGCCAGCCGTACCGGCCGCCGAGGACAGTGCCCCGCACCTATCTGTGACGTACCCCCTACCGGATTCGAACCGGCGCTACCGCCTTGAAAGGGCGGCGTCCTAGGCCGCTAGACGAAGGGGGCCCGGTCGTGGCGGTGGTGCCTGCCACGCGACCTGCTCAAGTGTAGAGGACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2723350-2721608 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPO01000001.1 Actinomadura hallensis strain DSM 45043 Ga0197561_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 2723349 30 96.7 31 .............................A ACGGCACCCGCACGGCCGTGCTGGTCCACCC 2723288 30 96.7 31 .............................C CGCTCAGCCGGCCCAGCGCGCCGTCGATCGA 2723227 30 100.0 31 .............................. TCGGGTTATCCCACCGAGCAACCGCAGCGTC 2723166 30 100.0 31 .............................. TCCGACGGCTGCCACTGATATGGCACCGGCC 2723105 30 100.0 31 .............................. GGTCGAGCACCGTCCCGCCAGGCGGGCACGA 2723044 30 100.0 31 .............................. CGGCAAGCGCACCAAGGTCGATGACCGGCTG 2722983 30 96.7 31 .............................A AGATGCCGTGGACGAACCTGACCGCGATTTT 2722922 30 96.7 31 .............................A TCGGATCCTCCTCGTCTTCCCTGGCGGCTAG 2722861 30 96.7 32 .............................C CGGAGCCGGCCTTGGTGCGGGCGGTGAAGGTG 2722799 30 100.0 31 .............................. TCGGCATACGGCGTATCGGTCATGGCCGTAT 2722738 30 100.0 31 .............................. TCATCGACGCGGCGAGCTTGTCGTCCACCGG 2722677 30 96.7 32 .............................A TGTCGGCGATCTCTTCAATCGAGAGTTCGCCG 2722615 30 96.7 31 .............................T CCATGCGGTTGTCTATCGCCCTCGCGAACCT 2722554 30 96.7 31 .............................C CGGCGCGCTTGAGGTACTCCTCGGCCAGCAG 2722493 30 96.7 31 .............................C TTCCCCGTCGCGGTCACCGCGGACGGCGAGA 2722432 30 96.7 31 .............................A GCCGGTGACACGCTTCCCCGACGAGGCCGAC 2722371 30 96.7 31 .............................C GTGCTTCGTCGCCTGTTCCGGTCGCCACGAA 2722310 30 96.7 32 .............................C CCCCTGATCGATCCCAGCAGGTTCGGGCGGAC 2722248 30 96.7 31 .............................A CCTTGAGCCAGAGCGGGAGACCCTGGTCCGG 2722187 30 100.0 31 .............................. TCCACCACCCGTCGTAGCCGTCGGGGATGGG 2722126 30 96.7 31 .............................C GCTCGCCGAGGACGACCATCCCGTAAAGCTC 2722065 30 96.7 31 .............................C GGTTCCAGACCCTCTACCGCACCGCCCAGGG 2722004 30 100.0 31 .............................. ACGGGCCGCCGTCATTGCGGTGATGGTGCTG 2721943 30 96.7 31 .............................T TCCGGGCCGGCCGGTGATCTGGTCGTGCTCG 2721882 30 96.7 31 .............................A TCCTCTACCCCGGTCAGTGACGGTTCCGTGT 2721821 30 96.7 31 .............................C GTGACGCGGACACTTCGGCGGCACCGCAGCA 2721760 30 100.0 31 .............................. TCGCGAAGATCGATCTTGCCGCGTTCACGGA 2721699 30 93.3 30 ......A......................A CCCGACATGGTGCTCGTGCACGGGGCCTGC 2721639 30 90.0 0 ............A..A...........T.. | C,G [2721615,2721618] ========== ====== ====== ====== ============================== ================================ ================== 29 30 97.4 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : ACGTCACCCTGCAGAGCGACCACGGCATGAACGTCGAGTCCGGACGCAACTACGCCGAAGACGTGTACTGGTGACCATCATCATCCTCACCAACTGCCCCGCCGGCCTGCGCGGCTTCCTCACCCGCTGGCTGATGGAGATCTCCCCCGGCGTCTTCATCGGCGGCCCGTCCGCCCGCATCCGCGAAGCCCTCTGGGACGAGGTCCACAAGTACGCCGACACCGGCCGCGCCCTGCTCGCCTACACGACCAACAACGAACAAGGCTTCACCTTCGAAACCCGCGACCACAAGTGGCACCCCGTCGACCACGAGGGCCTCACCCTGATTCGCCGCCCCAAGTCTCGGCCCACCGTCTCCGCCAAGCCCCCACCTACAGGCTGGAGCAAGGCCTCCAAACGCCGCCGCTACGGCAAGCGCTAGCCAATGGCCCGAAATGTCGGAATCTCAGAAAGTGCTCCAAAACAGCGACCTCCACCGACAAACCCGCAGGTCAGCCAGA # Right flank : TCGAGTGCCTCTTCCGATCAGCCTGGGGTGGGGCGTCAGGCATGAGGGCCTCGGTCGGGCCCCTCCACAAGACCGTTCGCCCGCCGCCACATCAACGTGACCGGCACCTACTCCTTCAGGGATGAACGGAGGTAAGGGTTCAGCTGTTCTTGAAGGGGTTGAGCGTCTTGCCGGCGAGGTAGGCAAGGCGGATGGGCAGGGGTTTCATGGCGGCGACGGAGATCTTGTTGACGAGTCCGGGGACGCACACGGGCTTGCCGTTCTGGACGGCTTTCCAGCCTTCGGCCACGACGGCTTCGGGCTGCTGCCACAGGATGCCGGGGAGGCGGTTGGCTTTGTCGCGGGTGCCCATGACGTCGTGGAACTCGGTGTGGGTGAAGCCGGGACACAGGGCGGTGACGTGGATGCCGTGGGGTTTGAGTTCCATGTCGAGGGCTTGGGAGGTGTTGAGGACGTAGGACTTGATGCCGGTGTAGAGCAGGCTGGCTGCGGGCGGGGCA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //