Array 1 2591-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAQU01000021.1 Streptococcus sp. ACC21 ctg7180000005537, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 2590 36 100.0 30 .................................... AAATCCTAACTTGCAAAATATTCCTTCACG 2524 36 100.0 30 .................................... GTACCTCCGGCGTGGAAAGGGCATGAAAAT 2458 36 100.0 30 .................................... CTTGTCAGCAATCTCTTCCCATTTCAGAAA 2392 36 100.0 30 .................................... GCCTGTTAGAAGCTGACGCGAGTGATTATG 2326 36 100.0 30 .................................... TTGCTGTTAGCGGTTACCCTGCCTTGCGCT 2260 36 100.0 30 .................................... GTCAGGCATTAGCATATCGCCAAAAGGATA 2194 36 100.0 30 .................................... TTGGGGCACGTAGAGTTTTGTTGCGATTTT 2128 36 100.0 30 .................................... AAGCTATCGGAAAAGAGTGGAACAAGCATT 2062 36 100.0 30 .................................... AATCCGAGAAGAGATTAGTAAGATTTCTGT 1996 36 100.0 30 .................................... AGACATTCTTTATTGTCTCGTTCTATTGCT 1930 36 100.0 29 .................................... GTCACATTGGTCGATATTGGCGATTTGAT 1865 36 100.0 30 .................................... CCTCGCCTATCGCATTCTTGATTGAGTGTT 1799 36 100.0 30 .................................... CTCAACTCAACTCTTCTATTCTGTCGTTGC 1733 36 100.0 30 .................................... TGATTTGGAAATCTTAGCAAAAATAGAAAG 1667 36 100.0 30 .................................... CTTTTGTGCTTTAAGACACCACTCTGGACA 1601 36 100.0 30 .................................... ATGACATACTACATTTCAGACTGTTATCTG 1535 36 100.0 30 .................................... TGTTACTGGAATGAGACTAGGCGAAAGCCT 1469 36 100.0 30 .................................... AGGTAGTGGAGATAAGTTTACTGTATCTAA 1403 36 100.0 30 .................................... ATGATAAAAAACGTAGTCGATTTAAAGATT 1337 36 100.0 30 .................................... AAGATAAAGAACTAAAAAAAGCTATGAATT 1271 36 100.0 30 .................................... TTACACGAATATCTACAGATGGCGTTTTTA 1205 36 100.0 30 .................................... CGCGCTTTTTTGATATAATCATCTCAAAGG 1139 36 100.0 50 .................................... TATCCAGATAGTAAGATTGGGTTTTTTTTTTGATATAATCATCTCAAAGG 1053 36 100.0 30 .................................... TATCCAGATGGTACGACTGTAGAATTTAGC 987 36 100.0 30 .................................... TCCGCGCTGTTCTAAGAATCGAATTTGTTT 921 36 100.0 30 .................................... ACCATGCTATTCCAAGCATTTTGTGCACCT 855 36 100.0 30 .................................... TTAGCCTGATTGAGCTTTTCCTCACCTTTA 789 36 100.0 30 .................................... TATAATAGTGTTGTGAAATTTATAACTAAA 723 36 100.0 30 .................................... TGATTTCCAAAGAGCAAATTGCTCACGATT 657 36 100.0 30 .................................... ATTGTGACACCGAAAGCAAATGCCGTCTAT 591 36 100.0 30 .................................... AAACGAATTACCACCAATTTCTAGTTTTCT 525 36 100.0 30 .................................... ATTCCCGTTTCCTAAACCGCTAAATAGTGA 459 36 100.0 30 .................................... TAAACTGCTGTGATATTCAGTATCTTCGTT 393 36 100.0 30 .................................... TAGTTAGAAAAGGTTAACGTGTTATTGTTT 327 36 100.0 30 .................................... CTATTATCAATTTCCGAGAGCAGATAGCCT 261 36 100.0 30 .................................... TCACGAAACAACCTGCAGACAAAATAGAAA 195 36 100.0 30 .................................... AGCACGACCGCATGGAACGACAACGGAAAT 129 36 100.0 30 .................................... TAACAGCTGCAACCATCAAAGAAGATAAGC 63 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 39 36 100.0 31 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCCGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTAAGTGACACTGTTTTTGAGAAAAGTTTAGAGATTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATATGTCATGTTATCTGTCTGAACATGAACTAGCTAAATTGGTAGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGGTATAATATTAACAAATATAAGGAATCGTTCGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : CTATTTGCTAAGGTTAAATAGTGAGTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 66587-66353 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAQU01000027.1 Streptococcus sp. ACC21 ctg7180000005525, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 66586 36 100.0 30 .................................... AATACTCGGTTTGCGCGTGGGGAATACATA 66520 36 100.0 30 .................................... ACAAGCGATTGAATCGATTCTCTTAATTTA 66454 36 100.0 30 .................................... TGCCGGCCAACTTTACAAATACAGTTAATG 66388 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TAAAACTCCACACGACTGCGATTGAGATGCTTGTTCTAGCTG # Right flank : ACAATACATTTTAATCATAGGGCTTGCAAATTTTTCCAATCGTGTTATAATACTTTTTAGAGACATATCACCTACAGGAAATCTTTCAGAGAGCGTGTGGAGCTGGGAATCACGCAGAGGATGTAGCTGGGACTACTCGATTTATTTTTATGCAAACATAAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTAGGATTGCCGCTTTTTATTTTGTCGGAAGGAGGAAGAGTTATGCTCTATATGATTGGTGGATCGCCTTGCAGTGGGAAGTCAACAATTGCCTCCCTTCTTACTCAGCAGTATGGGCTGCTTCATATCAAGTTAGATGATTTGACAGACCAGATGATGGATCAAGCAAGAGCGAACGCAAAGCCGATTTCCCTTCTGAGACAGGACAGAAGTCCGGATCAAATCTGGCTGAGACATCCAGAGGAGATGGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 79410-77399 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAQU01000033.1 Streptococcus sp. ACC21 ctg7180000005510, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 79409 36 100.0 30 .................................... CTTGTTCTAGAATACACTCTTTTAACGATT 79343 36 100.0 30 .................................... GGATATTCGTAATCATATAGTTGAAGAAGT 79277 36 100.0 30 .................................... TCGTTATGGCAAATATCAAGTATTACGTAT 79211 36 100.0 30 .................................... CAGAGCGGTCAGCTGTTTACATTTCTTTAT 79145 36 100.0 30 .................................... TGAAACATTCAAGGTTAAATGTGATAACTG 79079 36 100.0 30 .................................... ATAAACTTTTTAGCATAAGTCTGGGCAAGA 79013 36 100.0 30 .................................... CCAAAGAGGAAACCAATACCTTTAAGTACA 78947 36 100.0 30 .................................... TAACTTTACAATATCAAAAATATTGCAATG 78881 36 100.0 30 .................................... AATAAATTTGAATTAAATGTATTACGTTCT 78815 36 100.0 30 .................................... ACGTCATGAGTTAGAAAGAGTATATGCAGT 78749 36 100.0 29 .................................... TGAATACAACAGTCAAGCTGCAAATCCGG 78684 36 100.0 30 .................................... ATTATTCATTTATTCAGAAGTTCATTAGTT 78618 36 100.0 30 .................................... CGATTGGGTCTACTTTGTCCGCACGTGATT 78552 36 100.0 30 .................................... CCGTTTTGTGAATAATAAACTGGTTAACAT 78486 36 100.0 29 .................................... CTACAACTCTTTGTTCATCAAATATAAAT 78421 36 100.0 30 .................................... TCAATGGTTCACCGACCGATACAACGACAT 78355 36 100.0 29 .................................... AAACAGAAAAACGGTTAGGAGTATAATAT 78290 36 100.0 30 .................................... ATTTCATTTCGAAAAATAGGTAGCCGATGT 78224 36 100.0 30 .................................... ACTCTAATAGGACTAGTCCCTTCAGCATAT 78158 36 100.0 30 .................................... ACTTTGATGGTTCTATTATACCACCGTTCC 78092 36 100.0 30 .................................... AATGAGTACCTTATTATTTATATTGTTTTA 78026 36 100.0 30 .................................... GTGACGTTTATCGCTATGAAAATAAAGTTT 77960 36 100.0 30 .................................... CCTACTGCCGCTTGTGCAATAGTAGGAAGC 77894 36 100.0 30 .................................... ATTCTGGTATGTCTGATAATTGGATCATGA 77828 36 100.0 30 .................................... CCTGTATCTTTTGAACGTTATTTTGACAAA 77762 36 100.0 30 .................................... CTCGCAATCTCTTTGTGTCGTTCTTTATCA 77696 36 100.0 29 .................................... GATGCCCATAATTTCATATTAAAATCGCA 77631 36 100.0 29 .................................... ACGAAATGGGAGCCTATGACCGTTACGAG 77566 36 100.0 30 .................................... TAATATCAAAATAGCTTCTCATGCTTCATC 77500 36 100.0 30 .................................... TTGTAAATAATAAAGGAGGGCTTGAAGCCA 77434 36 97.2 0 ................................C... | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : ACGATTACTTAAGTTATTCCTCATTTGTAAAATGTTGTGAGCAATTACAGAGAATGGCCGACAATTACAGTAATTTTAGTGTCATTATTTTCCCGTCAAATGAAGGCTATCTTTATTTGAATCGCGAGAATATGGAATACGTCAATATTGTTTCTGATTTGGTTGAACATTTTTATGAATTTTCTTTTATGTATGAAAGGTTTAGTGGTCAATATCCTACTAATGACGTACCTACAGAAGATGATTTCATCGTCTCTTTGCAAAAGATTTCACCATATTTATTTAGTAAAGACGTGACACATATGAGTTTATCTATCCAAGATATAGTAACCTTAAAAATTATGAACAGTTTATACCATTATAACAAGAAAATTCATTTTGCTTATAATCCACCTACTCAATTATTAATTAATTTTTTAAAAACTTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAG # Right flank : TACATTAGGAATTGTTTGATGTAAAAGAATTGTAATCTAATAGTTATCTGAGTAATACATTAGCGGAATTGTAATTTAGGCTGAAATGGTTTATAATGAAAAGTAGCAAGTATATTAGGAGGCCGTCTAATGGAGAGAAAAATTAAAAAATCGGTAGTTGCGACCGGTTTAGCTGCAACCACTATTATTTCAGGCAGTTTATCACATCAAGTAAATGCCGAAGAAGTAAAAACACAATCTACTGAGCCAAAGACATCTGAAAAAATCACCAAACCAGTTACAGAAACAGATGTTCAATCAGCAAAGATGCAAGCCGATGCTGCAAAGGTTCAGACAGATGCTCAGCAAAAAGTTGTAGAGCAAGTCAAAGGAGATGTAAATACTTCAAAGGACGCGGTAGCAGATAGCGAAAAAGCTGTTGCAAATGCTGAAGCAGAAAAGAAAGAAGCAACTCCAGAAGTTATTGAAACCGCAAAAGAAGAAGTGGCGACATCAGAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //