Array 1 44213-42660 **** Predicted by CRISPRDetect 2.4 *** >NZ_APSX01000109.1 Neisseria meningitidis 98005 gnm98005.contig.108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44212 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 44146 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 44080 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 44014 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 43948 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 43882 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 43816 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 43750 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 43684 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 43618 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 43552 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 43486 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 43420 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 43354 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 43288 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 43222 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 43156 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 43091 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 43025 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 42959 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 42893 36 100.0 30 .................................... TTCTTCAAATTCCTTAGACGCAATTAATGC 42827 36 100.0 30 .................................... GAATCTTTAAAGGCAGATTCGGGATTTCCC 42761 36 100.0 30 .................................... TGATGCGGCGATACAGCGAGCCAGTTGCAT 42695 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //