Array 1 46376-45748 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXFV01000032.1 Pectobacterium peruviense strain IFB5232 contig_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 46375 28 100.0 32 ............................ TGGCTGAATGAGGCCGTGGAGGCTGCGGCTAC 46315 28 100.0 32 ............................ CAGTCGCTACCAAGCGCATTAAGTGCAGGGAC 46255 28 100.0 32 ............................ TGGTCTTCACTCAACCCTTGCGCACTGGCCAC 46195 28 100.0 32 ............................ AATTATTAGCGCGTTCTAATACATGCCCTTTG 46135 28 100.0 32 ............................ AATCGGAGCAAGTCATGCAGAGAAATCAAAAT 46075 28 100.0 32 ............................ ACCTGGAAGACGCACTACGCCTGAATCCGCTG 46015 28 100.0 32 ............................ TTGCTTTAACAACCACCGTCTGAACTCACTGT 45955 28 100.0 32 ............................ CAGCCAGCTTATCAGGGGGCCATCAAGCCATC 45895 28 96.4 32 .............C.............. AAGCAAATAGACTCCATATTTGAGCGTAACGG 45835 28 96.4 32 .............C.............. ATCGCAGTGATGAAGATCCCCGCAGCCTCCCC 45775 28 75.0 0 ............GC......T.C..GGC | ========== ====== ====== ====== ============================ ================================ ================== 11 28 97.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAGAAACGAATGCCAATTGGGTTTGACTGGGCGCAACATGATGGTATCCCCTTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAGTCCATATCACGCGGTAAGCGAATAGCACGATTATTACCATTTTTAAATACTGAGACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCCAGCCGCTAGCCTGACTAAAACATAGGTTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGTACGCACCTAACATAGGTCTACCGAGAATAGATAAAATCGTTGCCACAGGGTTGGCACCCTTTTTTCACGGACACTTGTAACTCATTGATTTTTAATATCGATTAAGCGCTATGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAAC # Right flank : TTATCGGGGATACGTTGCTGGTACGACTCGCTTCAAGGGTGTTATTCCCCATTCAGCGTAACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATGCCCTGCCAGGTACCGATGTTCAGGCGTCCGTTGGTGATGGGGATTGTCAGGCTGTTTCCCAGCAGGCTGCCTTTCAGATGCGCAGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACTGTGGGGTCGGCATTCTCATTAATCGTCAGCGCCGCCGAAGTATGTTTGATGAACACATGCATCAACCCGACCTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGATATCAGGCTTCGCGTGCCAGAATA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 56063-56870 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXFV01000032.1 Pectobacterium peruviense strain IFB5232 contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 56063 28 100.0 32 ............................ ATGCTGGCCAGCGCTACAGCTAGCCCCATGTC 56123 28 100.0 32 ............................ AGCACGCGCAAGAATGACTAGCAGGGATGTCG 56183 28 100.0 32 ............................ CAACGCTCAAACAGATTAACGGCGATAGACGA 56243 28 100.0 32 ............................ AACAAGCGCGTATGCAGGCCAACGCGGATTAT 56303 28 100.0 32 ............................ GTTGAAATATTTCAGTGATTGCGATGAAGATA 56363 28 100.0 32 ............................ TGATTGGTGAAATGGACCCAGATGCCGTGGAT 56423 28 100.0 32 ............................ TGTATAAATCTATCTTTTCCCCCTCAAATCCC 56483 28 100.0 32 ............................ GTCAGATTCTGATATTGAAATAATCTTGGAAC 56543 28 100.0 32 ............................ GCCTGAGTCGATGGATATGCCCTCTCAGAAGG 56603 28 100.0 32 ............................ TCACGGTAACGCTGCATAAAGTAATCACGCTC 56663 28 100.0 32 ............................ TTACGTTGGCGACGGCTTCGGGCCGCTTCACT 56723 28 100.0 32 ............................ GCTTTCGTATTCTACAGTCATTACTTTATCGC 56783 28 100.0 32 ............................ CGAACCACGGGTGAACCAGTTCCCCTGCCCCT 56843 28 78.6 0 A..........T.........C..TTC. | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGTTACGGAGGTGCCGGTTCCCAGCATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGACCACCGTTGACGAGAATACGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTTCCGTAATAGATAATAGCCATAACGCCAGCTAAATAAATCGCAGGCTAACTATTTGATAAGGAAAAATATAACTTTCAGAAAACTGATGAAAATCAGCCTATCACAGTTGCATGTGAAAGATGATGACCGCAAAAAATTTTACCCAAACGTAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATGGGGTTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : ACAGCACTCAGGCGCTGCTGTCTGGTTATTATCGAGGTAGCACTGCGCCAGCGCTCAATGCGCTGTAGCTCTTAAATAACGTATTGTTGATGGCCTATTTTCGTAATGTTTTCAAGTAATGGGTTTCTTTTGGTGGGAATGGAAAATTGCAGATTGAATTTTATTAACATTTTAAAATCACCATTTTTCCGTTAAAGTGCACTTACAGGGAAATAGTTTGTTTACTTAAGTAAAATTCGAGGGAGTGAGGCACTTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGATTATCGATTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGGAGGAAGCGACGTATTTTTTACAAACGTTATGCACCCCTAATCCTAATCAATCGTGGAAAATGGCCATGTTTGGCTGTACCGATCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //