Array 1 17485-18247 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGX01000023.1 Aerococcus urinae strain UMB0126 ERR1203638.17957_1_50.23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 17485 32 100.0 34 ................................ CTTTTGGTACCTCTGCGATCGCCTCATCATGGAC 17551 32 100.0 34 ................................ AACGCTGATCCGTAGGTTAACCCCTCGTCTCTAC 17617 32 100.0 34 ................................ AATAACAACTGGTTTCTTTCTGTATTTCATTAAC 17683 32 100.0 38 ................................ ATAATATGGGCTTAGATTTTAAAGAAGGTAGTGTGAGT 17753 32 100.0 35 ................................ CATTTTTCTGATCATGTCGTAGATCTCTTGTTTGC 17820 32 100.0 34 ................................ CGCAATATGCGAATGGTATTGGGTTTTCTACCGG 17886 32 96.9 34 ..........A..................... AAGTGGACTAACCGCCATCTTTCTTTAGGGCCGT 17952 32 96.9 35 ..........A..................... AGCTCCAATTTGTCGCCATGGACTAAATTGGCCGG 18019 32 96.9 34 ..........A..................... AGCTCCAATTTGTCGCCATGGACTAAATTGGCCG 18085 32 96.9 33 ..........A..................... CCTCCTACTTAAACTTCTGATCATCCATATATC 18150 32 96.9 34 ..........A..................... TAAGAATTGTTGAAACCATGAGTGAAATTCGCTT 18216 32 84.4 0 .......A....A...A...AC.......... | ========== ====== ====== ====== ================================ ====================================== ================== 12 32 97.4 35 GTCGCAGGCTTCGCGCCTGCGTGGATTGAAAT # Left flank : AGCTATTGGCAAGGTATATCCGTGGAGACATTGACTACTATCCGGCATTTATTAGTTAAAGGTGATTTAAGATGATGGTGTTAATTACTTATGATGTGAATACCGAAAGTAAGGCTGGCCAGAAACGCTTACGTAAGGTGGCTAAGGTCTGTGTTGATTATGGTCAACGCGTTCAAAATTCCGTTTTTGAATGTAGCTTAGATCCTGGGCAATTGGCACTCGTTAAATCGAAATTAGATGGTATCATAGATAGTGAAGTCGACTCGATTCGTTTCTATAATCTGGGTAAGAATTGGGATCATCGAGTACAAACCTTAGGACGGGACGATACCTATCACCCTGAAAAGGATGTCTTACTCTTATAACGAACCCCAAGCACACAGAATTGTATCGGTAGCTTCGTTTGTATTTTGGACTCAAAAATACAATATAAGTGATTATTTTGCTCTTTTTATAACACTTATATTATGAAAATATAGTGAAAACTTGTAAAAAGAGCT # Right flank : TTGTAATTGCTGATAGTATCAACATTAGTAACGAGGGTTCAGACTTTTTGTCTGTATGGATTGAATTATCAGTTAACGAAAAAGCGATACGTTTTTCTTGTCGCAATTTATACACTTATGTAGGTAGAAATTAATATGCGGCTAAGTATTACAAATATGGTCCAAAGTTGTAGGCTTTCTTTCAGCAAAGATTGACTATTTATACCAAGCAATCAGCCCTTGCCAGCTCCTCCATCAGCGAGCTCAACAAGGGCTTTTTCTATTACATCGACTCATAAAAGCACTAAAAAAATTAACCCAATCCCAAAAATAAATCACAGCCCCACTAAAACCGATCATTCTTGATCCTTTTTCCTAAGTTGACAGTAGTCCTTGGACAGGCTAAACTATCAGTAAATCAAAACATTATTAAGGAGATTACATCATGACTTTAGTATTCATTTCTTGGCAAGGCTGGCGTAGAGTAAAGTGAGATAACTAAGAACGGTTAGACTCGCTTT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGCTTCGCGCCTGCGTGGATTGAAAT # Alternate repeat : GTCGCAGGCTACGCGCCTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : NA // Array 1 49895-49560 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGX01000006.1 Aerococcus urinae strain UMB0126 ERR1203638.17957_1_50.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 49894 30 100.0 31 .............................. TGTAGGTGGAGAGAAAATGAGCAAAATTGTA 49833 30 100.0 31 .............................. ACGCTACTCTAGTCTTAAAGGTGGACGACAT 49772 30 100.0 31 .............................. TGTTGGAAGGTATATTTAGACAACTAATAAA 49711 30 96.7 31 ............................C. ACCGCGTTATACGTGCTGCTGCCTTCTGATT 49650 30 100.0 31 .............................. TGATAAGCACAAACCCATTACAAGATTCATT 49589 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 6 30 98.9 31 CTTTTTCCCGCAGACGCGGGGGTGATCCTG # Left flank : GCAAATTGCTATGTGCTTTCAAGCTTACCAAAGTGAGAACTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGAAATCTGATCAAATTACAAATTCACCGGATTATTGAGTCAGAGTATGATTTTGGCCGGCGTGACAATGCCTTATTATGTCCGCACTGTCAGGAACAGCTGGGCTCTTTGAGTGAACATAAGGGCCGGCCTTGTTATTTCTTGCACCGAGGACGAGTACAGACCAAACGCTTGCAGCATTATAAAAGCTAGCCAAGGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGGAATTGGGTAGGTTAGGAATGACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : AGCAAGGCGAATTAGCTTTTAACGAAAAAGGCTTTTTCCCGCATTTATTTGGAAATTAATAATATTTGATTTAATAGAGGCTTTAAAGAAGTCTCTTTTTTATTAGCTTTGATCAATATTTCTTTTGAAATCATCAGCTCGATTTATCCAAGCCTTGGGGTGGACATGCTATAATATAAAAGTAAAATAACTTTATCATCCTTTCCTGTGATAGGAGGATTTAAAGCAAGTAGGTATCATTGTAAACTTTAGGAGGTAGTAGCTTATGGCTGAATCTACTCGGAGTGTTTTCATATCTGGGTCGAGAACGCAAAACCAATTATCCCAAGAAGTACTAGATTCCATTGACGCAATTATTGACCAAGGCATAAAGATTAACCTAGGGGATTCCAACAAGGGGGTCGATAAGGAAGTGGCTGACTTGCTTCGACTTGAAAATTATCAGGCGGTTGAAATCTTCACCATTAATCAAAAGCCACGGATTGCCATTGAAAAGGACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCAGACGCGGGGGTGATCCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //