Array 1 5052-2851 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNPE01000446.1 Xanthomonas oryzae pv. oryzae strain YN03-20 scaffold445, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 5051 31 100.0 35 ............................... AAATGATTGAGCATCAAACATCTATGTTTGATAGG 4985 31 100.0 37 ............................... GCCGTCACCTTTGGTGTAGCTATGCGGTGAAACGACG 4917 31 100.0 35 ............................... ATGATCGAACGGCCTACCGGCGCGCCCTCGCCTAC 4851 31 100.0 34 ............................... CTCAGGGCTATCGCCTGTCAGGTGCAATCAAAAC 4786 31 100.0 34 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAGC 4721 31 100.0 35 ............................... GGGGTTCCTCGGCAAGGTCGGCAGCTGGATCGGCG 4655 31 100.0 34 ............................... CACACGAGCGCGTCGAAGGCGGCGTTGTGCGCGA 4590 31 100.0 34 ............................... GAGGACCGGCGTGCAGCATCGGTCAACATTGGCG 4525 31 100.0 35 ............................... TCGATCCGGCCGTCGGCGACATCGGCTTGGCGACC 4459 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 4394 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 4329 31 100.0 36 ............................... CGCCGCGTTCGCGCCGCAGACCGTAAGCAGTTGGCG 4262 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 4196 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 4130 31 100.0 36 ............................... CAGAGCCTACGGGGCTGGGGCAGCATCAATTGCAGC 4063 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 3999 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 3933 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 3868 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 3802 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 3737 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 3670 31 100.0 36 ............................... TCCGGGTTCAAGAGTTTGTCTACAAGTACCGGAAGG 3603 31 100.0 34 ............................... CGTATCAGCCTGGTGATTACGAGCTTGATATTGA 3538 31 100.0 34 ............................... AGTAGCCAGTGAAGTCTCCCAGATGATCCCACAA 3473 31 100.0 34 ............................... CGATGATGTTGTACAAGAATGGAATATCCTTAGC 3408 31 100.0 33 ............................... ATACCACATGAGTCTGTATTAGATGCAATGGAG 3344 31 100.0 34 ............................... GCGTGCACGCAGGATGAGTCGGGTAAGTGGTGTA 3279 31 100.0 35 ............................... TCGCAACGCCCGCCGCTGGTACTTCGGTCAATCTT 3213 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 3147 31 100.0 36 ............................... AATGACAGCGCATCTGTGGCGGAGAATGCCCCTATG 3080 31 100.0 37 ............................... AAGCTTGATCTTATTGGCATACACCCACCGCGGGAAC 3012 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 2947 31 100.0 35 ............................... TTGTGGGACACGGCAGATATGGAGATGTGGGAAAG 2881 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 34 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGGG # Right flank : GCTACCACCTGAACGGCGCTCGCCGCCGCCGACCGTCGCGTCCTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGGATTGAAACGCTACCACCTGAACGGCGCTCGCCGCCGCCGACCGTCGCGTCCTCACGGGCGCGTGGATTGAAACCCCTTGGTGCCTATTGTGCCTAAATCTAGGCACAGTCGCGTCCTCACGGGCGCGTGGATTGAAACCACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTCGTCGCGTCCTCACGGGCGCGTGGATTGAAACGGCACGGGGACATCGGCGGTGCCGTCAGACGCTAGGTCGCGTCCTCACGGGCGCGTGGATTGAAACAACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATGGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGGCAATCGACGGCGATCTAGGCCCCGACGATTTAGTCGCGTCCTCACGGGCGCGTGGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //