Array 1 800275-801160 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSZH01000001.1 Pectobacterium parmentieri strain IFB5597 IFB5597_ctg0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 800275 29 100.0 32 ............................. AACGCTCCGGCAGTCAATCAGCAACCGCAAGT 800336 29 100.0 33 ............................. CAACGACTAGCATTTCCCCCTCGGATGACTTGA 800398 29 100.0 32 ............................. ATCAAACGCTTCATTTGGGCCGCGCCCTGGCT 800459 29 100.0 32 ............................. CCACCAGCCGCACGCCCTCTTTTTCTTGCTGA 800520 29 100.0 32 ............................. TTCTGCACAGCGTCAGTGAGAACGTTATCGAC 800581 29 100.0 32 ............................. CCACGATGAACGTAGATATCTGTGGCGGCGTT 800642 29 96.6 32 ............................A GCGAAATGGGCTGCGTCATCGATATCGAGCAG 800703 29 100.0 32 ............................. CTAACCGTCACCAAGGCGTTCAGCGTACTGAA 800764 29 100.0 32 ............................. CTGATTAATAGTGCTTTTCGCATCGGCTAATT 800825 29 100.0 32 ............................. GTTTATTCAGACGGGCAATGGCAATCACCCAT C [800834] 800887 29 100.0 32 ............................. TATCAATGACTACGTTTGGTTTTGTTCGTCTT 800948 29 100.0 32 ............................. AAATGCCCGATATGCCAATCTGATTTTATCCC 801009 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 801071 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 801132 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGTGGCAGGCTGGCAGTGTGGTTGCTGGAGGTTCGCGCGGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAGTTCCAAACCTGGGGTGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATGCTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGTGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 803030-803424 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSZH01000001.1 Pectobacterium parmentieri strain IFB5597 IFB5597_ctg0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 803030 29 100.0 32 ............................. CCTGGATCATTGGTGTTATAGCTCTTGAAACA 803091 29 100.0 32 ............................. CACCCCCTGAGGGACTGGGAGTACATCATAAT 803152 29 100.0 32 ............................. GGAATGGATACCGCAAAATGCCCTCCGAGAAC 803213 29 100.0 32 ............................. AAATTCAGCGACTCAGAGCTTGAATCTATGAT 803274 29 100.0 32 ............................. AAATGAAATTTTTCTGGGTGTGGGAGCAAAAA 803335 29 96.6 32 ............................C TTCGCGATCATCCTCGTCTTCGGCGTCCTCCT 803396 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGAATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGAGTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGGTCTGGATGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTTTTATAAAACAAACCTCTACTTTTAGA # Right flank : GTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGTACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGTGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 336341-336969 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSZH01000004.1 Pectobacterium parmentieri strain IFB5597 IFB5597_ctg0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 336341 28 100.0 32 ............................ AGCCTGGCTCCATGTGTCCAGCGCGGAAGCCT 336401 28 100.0 32 ............................ TCCCCGGTGTCGCGTATTTGATAATCAATGTC 336461 28 100.0 32 ............................ TTCCCGTCTTTATACACAAGCACTTTCAAAGA 336521 28 100.0 32 ............................ AGTCGAAAGCGAATTCGGCGTTTCAATCAAGT 336581 28 100.0 32 ............................ GTTAGCGTATACGCTGGTGATGACTTTGTGAA 336641 28 100.0 32 ............................ GCCGACAGAAGCAATTCGTTATTGCGATAGCC 336701 28 100.0 32 ............................ ATAACAGCCGCCGCCGCTGAATAGCCGACTTC 336761 28 100.0 32 ............................ GAATGGGTCACGCCCCGTGACCACCGTCCACC 336821 28 96.4 32 .......A.................... GTATCGCACAATTCAGCAGCAATGATTGGCGA 336881 28 100.0 32 ............................ TCAGAAGAAATTCCGTAGTCTGTTGAGAATGT 336941 28 89.3 0 ............GC..........A... | G [336967] ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCGCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : ACAAAACGTTCCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTTGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 353781-357949 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSZH01000004.1 Pectobacterium parmentieri strain IFB5597 IFB5597_ctg0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 353781 28 100.0 32 ............................ ATCGACCATGACGCCATCCTGCTCGACGAGGT 353841 28 100.0 32 ............................ TGGAAGCACTGGAGAAGGGCGAGGATGTGCCA 353901 28 100.0 32 ............................ TCACAGCACGACGCAGACCACCGCCAAGTGCC 353961 28 100.0 32 ............................ GTGCAAGGCAAGTAACGCTGGCGCTGATACTG 354021 28 100.0 32 ............................ GCAGGAACAGGGCGATCAACCTCTGAAGACTA 354081 28 100.0 32 ............................ CTTACTGGCGTGCACGCGAATGATGCGGCCTT 354141 28 100.0 32 ............................ TACCCGAGAGCAACTGTCAGCCGGTATGCAAC 354201 28 100.0 32 ............................ CTCTGCGATAATCCCATCGCGTGGGATGTGCT 354261 28 100.0 32 ............................ GCTTTGTATTGAGCCGGCTTGTTGCAACCATC 354321 28 100.0 32 ............................ CTGACCGCGTTTTCATCCTCGGCGACTACTCG 354381 28 100.0 32 ............................ GTCAAGCAGGGTGAAGTATTGAAGCAGGAGCA 354441 28 100.0 32 ............................ TTTGCATAATCAGAGCCTGGTCGCGCTTCACT 354501 28 100.0 32 ............................ TTCTCGCTGCCATCTTCAAGCGTGATAGTCAC 354561 28 100.0 32 ............................ GGCTGCGGCAACAAGCCATCGATGCTGCCAAC 354621 28 100.0 32 ............................ ATAAACCAAATCACCAGAGCTAGTAATGGCGA 354681 28 100.0 32 ............................ GCAGTCGATCCAGCGCTTAATGCCAATAGCGC 354741 28 100.0 32 ............................ AGTCTACGGCGATCTGCTCGTCGGTTTTTCGC 354801 28 100.0 32 ............................ AGCCATCACTCACAGCACAGCAATCAACTCGT 354861 28 100.0 32 ............................ AGTCTACGGCGATCTGCTCGTCGGTTTTTCGC 354921 28 100.0 32 ............................ AAGATAGTGTCACTGTCACCAAAACAGTGACA 354981 28 100.0 32 ............................ TGCCAGGTCTTGTTATTCGAGCAGCGAAGGAA 355041 28 100.0 32 ............................ AACGTGATTGTGCGCACTGAAGACGGCGATTT 355101 28 100.0 32 ............................ TAATAGACCAGAGCCGCAAGAACAACGCCATC 355161 28 100.0 32 ............................ AGATGAGCTAGCTCGTCGTCGTTAACTCCCCA 355221 28 100.0 32 ............................ TGAGCAGGACGAAGAGAAACCGCCAGAACAAC 355281 28 100.0 32 ............................ ACTGGCGGCGGCATTTACTGAGGGGTTTAAAA 355341 28 100.0 33 ............................ AACAATACCGCCGCAGATTTGCCTAGTAATTAT 355402 28 100.0 32 ............................ GTTACCTAAAGCACTAGCTCGAAGCCAAATTC 355462 28 100.0 32 ............................ AGTTGAAAGTGAATACGGCATTTCGATCAAAT 355522 28 100.0 32 ............................ GTGATAGTCGACGTCTGCTTTTACTTTGCTGT 355582 28 100.0 32 ............................ AAACTTACCGAATACTTGATTTATGTTTACAT 355642 28 100.0 32 ............................ AAGTGCCGGTCGAGTTGGTGGCTTCTGTAGAC 355702 28 100.0 32 ............................ ATTGTTTGAAGCGTCATGACTTCATCGAATAC 355762 28 100.0 32 ............................ AGCCAATTAATCCTTGTCCAGCCACGCCGTTT 355822 28 100.0 32 ............................ ATACCCACACGTCTAGTGTGTGGGTTGTGCTT 355882 28 100.0 32 ............................ TACATCAACTACCCGAACAACCGCGCCATTCT 355942 28 100.0 32 ............................ ATCCTGCAAGCCTCTTTTGTATGCCTTGTAGC 356002 28 100.0 32 ............................ GACGGAACCCCCCGCAATGTCATTCTCATAAA 356062 28 100.0 32 ............................ CAGATCATACGCATACAGAGGAGCGTTATAGC 356122 28 100.0 32 ............................ TGTGGTTAGCAGATTATTTCGAGCAAAAAAGT 356182 28 100.0 32 ............................ CAGCCCCTAAGCGCGGGCGCGGTAGACCAAAA 356242 28 100.0 32 ............................ AAACTCGGCGAAATTGCTAAAATCCCATTACT 356302 28 100.0 32 ............................ GCCACCCTTTGGTCTCTTATGTCACCGAAAGT 356362 28 100.0 32 ............................ ATAACCAACAATGAAGTAATTTCTTTCATGAC 356422 28 100.0 32 ............................ AGCAAGCACAACCCACACGTTCGCCATGTGGG 356482 28 100.0 32 ............................ CCCAATTCCAGTTCATTCATGACGTACATGAT 356542 28 100.0 32 ............................ TAGCAGTTTAGCTACGGCTTCCAAAGTATCCA 356602 28 100.0 32 ............................ AGCAGAAAGCAGGGCAAGCGGCGGAAACTCGT 356662 28 100.0 32 ............................ TTCGCCGTTCTGAAAACCGTTTTTATTATATG 356722 28 100.0 32 ............................ GGCGACGACATGGTAGGAGACTTTTTCCGAGC 356782 28 100.0 32 ............................ AGCATTTAGCGGTATTGGTCTTGTCAGTGATA 356842 28 100.0 32 ............................ TGAACACGACGCTATCTAACGGGCGTCGACTT 356902 28 100.0 32 ............................ GTTGGTTATGCCTACGGTCTGGATACCGTCAC 356962 28 100.0 32 ............................ GTGTACGCTGGCGATTGCACCATAACCAACAA 357022 28 100.0 32 ............................ TTAGCCAACCTAACTGCGTCTGGTTTCGTTGC 357082 28 100.0 32 ............................ GCTGAATCAATGCCATTACTCGCCTTCTGTAA 357142 28 100.0 32 ............................ CTAAGAGGATTGCAGCATGACCAACAAACCGA 357202 28 100.0 32 ............................ CTCGTCGTAAGCACCTTCACGGTAAATACCCA 357262 28 100.0 32 ............................ GTCAGGAAGCAATCAAGGCGTTAAGCGTAATC 357322 28 100.0 32 ............................ ATGTAGCCAACAATTTCAATAGGGCCAATGAC 357382 28 100.0 32 ............................ AAATTGTTCAACAGCAACCACAAATACAACAA 357442 28 100.0 32 ............................ CGGGACGTTGCGCACGCGCTCAAGAGCAGCGC 357502 28 100.0 32 ............................ GCCCGCGCCCACAGGTATCGCCTGCCCGAAAT 357562 28 100.0 32 ............................ TCTCATGATTAACGCGACAGCCAATGCTGATC 357622 28 96.4 32 .............T.............. TGTTTCGGCGAGCTTTATCAGCACATTACCGA 357682 28 96.4 32 .............T.............. GACACGAACACCAGCCCACGATAACGCCCCCA 357742 28 96.4 32 .............T.............. CACGGCGGCTGAAATTGGCGCACTCTCAGCAT 357802 28 100.0 32 ............................ GGACCGCCCATGTCGAGCCACGCATCAACAGA 357862 28 100.0 32 ............................ AGATCACAGTGAACAGGAAAACGATATTCAGC 357922 28 75.0 0 ...........CG.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 70 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAACTATTTAATAAATAAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATAGCTTGGGAAAATGATGGCTGCAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAACTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATACATCAGTCCGGCTTTTATCTGACGCAGTGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //