Array 1 74921-77143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNZS01000015.1 Micromonospora parva strain NRRL B-2680 contig15.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 74921 28 100.0 33 ............................ GCAGCCGTGCTGTCCCTCGCCCGGCCTCAGCGG 74982 28 100.0 33 ............................ TACGCCCACGACCAGGACACCATCTCCAAGTTC 75043 28 100.0 33 ............................ GGTGGCGCGCAGGACGTGCGGCCCGAACCGGCG 75104 28 100.0 33 ............................ CTGGGAGTCGGCGACCACACCCGGCCGGTCGAT 75165 28 100.0 33 ............................ CGGGCAGCCCGTGGTCTTCGACCTGAAGACCGG 75226 28 100.0 33 ............................ CGTCCGGGCGGCGGCGAGTTCCTCGTCGGTGGG 75287 28 100.0 33 ............................ CTCGGCGTAAAGCGTCTTGTCCACCACCATGCC 75348 28 100.0 33 ............................ GGTCACCGAGGGCCACCCGGACAACGGGCCGGC 75409 28 100.0 33 ............................ CTTCTTACCAGGAGAGCAAGTAATCCCCCCCAA 75470 28 100.0 33 ............................ CGACTGGCGTTCGCGGGCCTGGACTTCGGTGGC 75531 28 100.0 33 ............................ TCCCGGGGGAGCAGCTGCGCCGGCACACCGGTG 75592 28 100.0 33 ............................ TACGTGGTAGCCCGACCGGCATAGCTCATCGTC 75653 28 100.0 32 ............................ GGTGATCCGCCCGGCCAGGTGAGCGGCCATTT 75713 28 100.0 33 ............................ GTACCCGGCGACCGTGGCCCAACCCGACCCGTT 75774 28 100.0 33 ............................ CGATTCGGTTAACCTGCGTGGCGGTACCCGGAT 75835 28 100.0 33 ............................ TCGTACGACGGTGGCGACCCGACCAATTCCGTT 75896 28 100.0 33 ............................ CCCGCATCGACCTCGACGGCCACCGGCAACGCC 75957 28 100.0 33 ............................ GGCCGTGAGCCGCCTGCGAGCGAGCCTCTGACG 76018 28 100.0 33 ............................ GGCCCGGACCGGGTGGCCGACAACGGCCCGGTC 76079 28 100.0 33 ............................ CTGGTACAACGGCTTGGCTACGCGGCCGGACGG 76140 28 100.0 33 ............................ CCAGGGCACCGGAGTCCAATCGAGAGGGGTCGA 76201 28 100.0 33 ............................ CGCGCCGGCGAGGTCGCGCAACGCCGGCGTGTA 76262 28 96.4 33 ...................A........ CGGCCGGGCGCGCGTCGTCGCGGTGACGATCGA 76323 28 100.0 33 ............................ GAACGTCCGCTACGGCGCGGCGATCGACATGTC 76384 28 96.4 33 .........A.................. GAACGTCCGCTACGGCGCGGCGATCGACATGTC 76445 28 100.0 33 ............................ GGTCCGCCGGTGAGGCGGCGGGCTGCACCCCCA 76506 28 100.0 33 ............................ GGATGATGTCGGCGCCCTGCTGGGCTGCGGTCA 76567 28 100.0 33 ............................ GGCGATCGACTGGTTCCGGGTCCCGGCGGAGGC 76628 28 100.0 33 ............................ GTCGGTGACACCGCCGTCGACCCGCCGCCCACC 76689 28 100.0 33 ............................ GTTCGCCCGGGGCGCGCTCCAGTACGGCGACGC 76750 28 100.0 33 ............................ CGGGTCACCCGACAGCGGGCCCGCCGCCGGTCC 76811 28 96.4 33 ................T........... CGGGACCATGCTGGCCCTGTTCGTCCGGACGCT 76872 28 100.0 33 ............................ CCATGTCACGCCGGCGGCTGACCCCGCCAGTCC 76933 28 100.0 33 ............................ GATGGGGGCGGGCCCGGTGGTCATCCACTCCCC 76994 28 100.0 33 ............................ GATGGGGGCGGGCCCGGTGGTCATCCACTCCCC 77055 28 100.0 33 ............................ CGTGCCGGACGTCGCCGAGCGGTGGGAGTTGTT 77116 28 82.1 0 T...........T............CGT | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.2 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : AGGACGACGTCGCCACGCTCGGCCACCCCGCTCAAGAAGGTGCCAACTAAACCTGGACGGAAACGCTTCCGCCGTCCGCACCTAGTTGGCACCGCTACTGCTCAAGCGCGACGATTAGTGCCATCTTCACGTGGACCGGACATACAGGACCCGAGCGACCAGGGTTTCCGACGTCGGCAGGGCGGCATCCGGGCGTCGGAGGTGTGATCCCGTTCGCCGATGAGGGCGATGTTTGAAGGTGGCAATGCCCGAAGCGGCATCGATAGCCGTGCACCACGCCCACGGCTTACTCTTCATCAGCGGGTGTTCGACTTCGGCCCACCCCGTGCGGCGATGCCTGTTCGCCGGGCGCTCCGCTTAAGCCTCATCATTTATCCTGTAGCGGAGTCCGCTTGCCCTCTACCTACCTACGACGCGAACGCGAACAAAGTGAGACGGCCTTGCGAGACCTAGTGAATGAAAACTGCGAAGTCGATCTATAACGCCGCAGGTCAAGAAGC # Right flank : TCGACCGTCGGGGGATCGGTAGGTAACCGGGGGACGGCCCAGCCGTAAGAACGCTCTATCGGGACCTGCCCATCCGACTACTCAACGCCAAGCAGCTTGAGGATCGCATGAACGGGCACCACGTACCGCCGGCCCACACGCAGAAGGCGCACCGGGAACTCGTTGGTTTTGGCCAAGTCATAAGCCTTCGTGCGTCCGATACCCAAGATCGCTCCAGCTGTCTCGATATCGGTGGTGACGCCGAGGTCACGTACCGCATCGATTGTCCACACCTGGTCTTGCACTCGACTCGGCTTGCGTCCGTCGCTTGTGGTGGTTGCCATCGTCCGGCCCCCTAAGGTCGTGAACACGCCGAAGTCGGCGTCAAGCCTCACGATGCGGGCGATCGGTTATCTGGGGCGCTCCCAACGCAGCCAGCCCTACAGGCAACGACGCAACCACGTGGGTTCAAGCGCTGGTGGCGACCCGGACACCGGCCAACTCGAAGTCGGAAGACAGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 429337-430765 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNZS01000007.1 Micromonospora parva strain NRRL B-2680 contig7.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 429337 28 100.0 33 ............................ GTCTGCTGGGCCGGCTTGGTCGGAAGGCGGCGA 429398 28 100.0 33 ............................ TTCGCGGATCGCGTCCAGGGGCCCGCTCACGGC 429459 28 100.0 33 ............................ GGCCGACCCGGCAAGGGCGTTTACGTCCGACCC 429520 28 100.0 33 ............................ GGACTCCCGGGTGTCGCCGCCGTTGCTGCCGAG 429581 28 100.0 33 ............................ CGTCGGTGGTCCGCTTCGCCTGCCCGCCACCAC 429642 28 100.0 33 ............................ TGACCCGTACGACGCGCGCCCGGGTTCGTACGC 429703 28 100.0 33 ............................ CGCGACGCGTCGCTGTGGATCGACGCTCACTTT 429764 28 100.0 33 ............................ GGCCGAGGTGCAGACCATCGTCTTGACCAACGG 429825 27 96.4 33 .................-.......... GGTCGACGGCGTCCAGTGGGCCAGCTCCAACCC 429885 28 100.0 33 ............................ ATACGGCATTGCCATTCACAACACATCGAATGA 429946 28 100.0 33 ............................ GGCAATCGCGCTGCTCGGAGCAGAGGTGCAGCC 430007 28 92.9 33 ....C...T................... TACGTCGGAGTGTCGACGACCAGCCGCACCTAT 430068 28 100.0 33 ............................ CTGACCGCACCCCGGATCGCCGGCCAGCAGGCC C [430077] 430130 28 100.0 33 ............................ GGCGCTCGCGGCGGCCGAGGACACCACCGGGCG 430191 28 100.0 33 ............................ CGCGACGCGCTCTACGAGGCGCTGCTGACCGAA 430252 28 100.0 33 ............................ GAACCAGCGCCGTGCGTTCAGGTTGATCGGCTC 430313 28 96.4 33 ...........A................ GGTCACCTTTGGGAGCGTGCCCGGGAAGGTGCC 430374 28 100.0 33 ............................ GTCGACGCCGATGGACAGGCCGTCGTACAGGCC 430435 28 100.0 33 ............................ CTTCGTCGACGTCCCGAGGATGAGCGGCACAGC 430496 28 100.0 33 ............................ GGGCAGAGCGGCCGGCTGTTAACCGGTAGATCT 430557 28 100.0 33 ............................ GATGATCGCCGCCAAGCACATCCGGTTCGAGGG 430618 28 100.0 35 ............................ CCGGGGGGTGACGCCCGCCCGGTGGTGCTCACGTC 430681 27 89.3 30 .....-...A............C..... GTAAGCCGGAGTGGCTGTGGGTCGGAGCCG 430738 28 85.7 0 ............G........A.A.A.. | ========== ====== ====== ====== ============================ =================================== ================== 24 28 98.4 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : ATTGATGGCGGGTGACCACAAAGCCCGAGCCCTGTACGGCAGGAATGGGCCTCTAGGACTTTCCGTCCTGCCTTGCAGCCACCCATAGTGGCGAGCTGCTCGGCTTGCCCCGGGTCGATGACCGACTGGACTACTTCTCCAGATCATCCGATTCGGGCGGTCGCACCTGCCCTGCCGGGAGTCGGCATGTCTCCACCGACGGCTCTCGCAACCGCCTGTCAGGCAACACCTCGATGCGCTGGTGTAGAGCGATTTCGTCCCTCACATCGCGCCTGTGGGCCCACTGATCGCTCGTAGGTGCGAGCTCGGACCTACGGCGCTCAGCCGGCAGACGACGCTGGTCGTCTCGCTTGAGCCTCACCAACTACGCTGTGGCCGAACGCCCTGACGTCCAGATACCTCGTTACACGAACCGGAACCGAGCCCGAATGGGATGATCTTGCGGAACCTAGTGAACAAAAACCGCGAAGTCGATCTTTAACGCCCCAGGTCAAGAAGAC # Right flank : CCGAAGCCCTCATCTGCGAAGCAGAACAAAGTGGAAGCGTCGGCTTATTGCCAGTCATCTTCATCGCCAGCGATCGCATCCGACGGCCATAGCAAACAAAGAACCGGCGCGTAGCCATGCTGGTACTGATATACGGCTGAACGGCTTCCAACGACCATCGATCGGATCATGACCGCCGACTCCAGCGGTACCTAAAGTGGTGAAGTGTTAACCCTCGGCGTTGACCTCGCAGCCGCAGACGAACATACGGCGACGGCCGCGATCGAGTGGCTACCAGGCCGGGCAGTGGTGCGGGAGATAGCTCTCGACATCAGTGACGCTCGGATCGTCGAAGCGAGCCGGCACGCGGACAAGACCGGGTTGGATTGCCCGCTCGGTTGGCCGGAGCCGTTCGTCGCCCTCGTCACGACCCACCAGGTCGGCCATGTGAGGCCCCCTGACGGCGAGGGCGGACCTTGGCGGCGTCACTTGGCCTATCGCCAGACTGACGAAGTGGTGCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 439482-442560 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNZS01000007.1 Micromonospora parva strain NRRL B-2680 contig7.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 439482 28 100.0 33 ............................ ACGTCCGCTGACCAGCGGCGGAGCGCCGCGAAA 439543 28 100.0 33 ............................ CATGATCCCCGACACCAGCCCGCCCGCGCAGCC 439604 28 100.0 33 ............................ CGGAGCTGATCAGCGCATGAGCACCACCGCACC 439665 28 100.0 33 ............................ TGGTGTATCGGATGCCAAGTGACGGACGGGGAG 439726 28 100.0 33 ............................ GAAGCGGTGACCGGATGTCTATGGAACCGGTCG 439787 28 100.0 33 ............................ GCAGACCCTGGACTACACATCCGGGCTGAAGAT 439848 28 100.0 33 ............................ CTACTCGCCCCGCAACCCGCTCGGCACCTGGTA 439909 28 100.0 33 ............................ GGACGCCCCAGTGGCGGACCCCAGCAAGCCAGC 439970 28 100.0 33 ............................ CGCGACCCGGTCACCGGCCGGGAGGTCGTGAAG 440031 28 100.0 33 ............................ CCTCGCGGCGGACTTCCGTGTCCGCAAGTCGGT 440092 28 100.0 33 ............................ GGACACCTACTCGCGCACGATCGGCATGCTCGG 440153 28 100.0 33 ............................ GCTGACGAGCCCGGACGCGCCGACGGGTGAGCC 440214 28 100.0 33 ............................ CCCGCTTCAACGGGCGTTCATGCTGGCCGGTGG 440275 28 100.0 33 ............................ CAGCCGCGGCGTCGTGCTACCCCTGACGCTGTT 440336 28 100.0 33 ............................ GCCGCCGCCATGGTGGGTGCCCCGATCGCGGTC 440397 28 96.4 33 ......G..................... GGCGCGCACCGCGCTGAACGCCGCCGCCCGTCA 440458 28 100.0 33 ............................ CATTCCGCTCGGGCTCGGTGACCCTGAACGGCT 440519 28 100.0 33 ............................ CGGGATGGCTTCGTTTGCCATGGCTCAGTTCCC 440580 28 100.0 33 ............................ CATGGCGTCGTAGATCGCGTTCAGCTTGCGGCT 440641 28 100.0 33 ............................ CTTGAAGACGTTCATCGTCTTCGCGGCGATGTC 440702 28 100.0 33 ............................ CAACCCGTTCGGTAACAGCATCGGTGACCTGGC 440763 28 100.0 33 ............................ CGACTTCCTCGCCGGCGCCGAACGGTCGGCGTT 440824 28 100.0 33 ............................ GTTGTCGAACCGCGCCAGCACCGGCAACGTGGA 440885 28 100.0 33 ............................ CTCACCGCCCGGCCGGCGAGCGCGAGCAACCCA 440946 28 100.0 33 ............................ CTCGAAGACGCGTACGCCGACGCCGCGGCCGCC 441007 28 100.0 33 ............................ GCCGGCGCCCGGGACGCCAGTCGCGTTCCCGTT 441068 28 100.0 33 ............................ CTCTGCCCGCTCGGCGCTCGCGCGACCCTCCGC 441129 28 100.0 33 ............................ CGGCGTGATGTCGTCGAGCGTGCCCTCGTTGAT 441190 28 100.0 33 ............................ CGGGAGGTAAAGGATGAAGTACGAGTTGCCGCC 441251 28 100.0 33 ............................ GTCGTGGACGTGGGTGAAGCTCGCCGCCATGGC 441312 28 100.0 33 ............................ CGTTGCGGAGTCGCTGTACCCGGTGCGGACCAA 441373 28 100.0 33 ............................ CTGCAACCTCGGCCACGTCAACCTGGACCAGTT 441434 28 100.0 33 ............................ CTGGGTGTGGTTGTCCCCGTAGACGTGGAGGGT 441495 28 100.0 33 ............................ CAACGCCTGCTCGCGGGCCGGGGTGGACTGCGG 441556 28 100.0 33 ............................ CTTCAGCGGCAAGCGTCGCTTGACCTCGCGAAC 441617 28 100.0 33 ............................ CGACATCATGATGTGGCAGTCGATCAACCCGGT 441678 28 100.0 34 ............................ CGTGGGGACGCTGGCCGTTCACAGCCTCTCTGCG 441740 28 100.0 33 ............................ CGCCACCGGCGTCACGTCGTCGAACCCCATGCC 441801 28 100.0 33 ............................ GGTCGCGCACGCGATCCCGGGCCCGTGCTCGTG 441862 27 96.4 33 .....................-...... GAACCGACGGACGGGGGCGTACGTCGATCTACC 441922 28 96.4 33 ....................A....... CTCGGGCATCAGCGCGATGACGGTGAACGTCGC 441983 28 100.0 33 ............................ GGTCCCGGCGGAGTCGGTGGCCGTCTCCACGGA 442044 27 96.4 33 ..............-............. GGCCGGCAGCGCGACGCCGATCATCCCGATCGT 442104 28 96.4 33 ..........T................. GTAGGTGCCACCAGCGAACTCGGACGGCTTGGT 442165 27 92.9 33 ..........T..........-...... CTTCGGCGGACCGATCGTGCTCAGGAGGTGACC 442225 28 96.4 32 .................T.......... CCGTCCGAGCGGTGCCAGATCCGTCCGTTGTA 442286 27 92.9 33 ...A.................-...... GGCTCTGGCCTGAAAGGACGCCTTCGGCCAGGA 442346 28 92.9 34 .......G.............A...... GCTGCGAGGGGCGGCGCGCGGCCTGACCCGTAGC 442408 27 85.7 32 .....T.............C.-.....T CGACGCGAACACTGAGAACCGCAATACTCGGT 442467 28 78.6 37 ......G.A.....TT..C......G.. GTGGCCGACGTCAATGCGGCACTCCGACTCCATCTGC T [442473] 442533 27 82.1 0 .....-........G..TC...G..... | A [442550] ========== ====== ====== ====== ============================ ===================================== ================== 51 28 98.1 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : GAGGTGCGGCCGACGCCGGCTGCGCGCTGACGCCAACCACGCAGGCGACGGCGGCGAGGACGGCTGCGCCGGCGTGGCGCGTGACGCGTGGGAAACGGGCGGAGAGTCGGACTACCCGCATGAGGGCCTCCTCGGAACTGGGTGGACGGCAACCGTCTCCGACGATCATGTACATCTATGTGCCTGCTTGTGAAGAGGTGGGGAAGCAGTTACGAAACTTCGATGAGCTTGAACGTCACTGGTTCGAGGGTGTGGGCTGGGGGTCGGGTATTCCACCCATGCCTCTCATTGCGCGTTCCGTCGGCACATGGTCCGACCCCTACCCTCAGCCAGGCAATGCAGCGCTCGCTCGTCGTATCACACAAGCCTTACCCGCTAGGCTGTCGCCAGGCTCGCTCGCCTAGATAGCCCCACGCCAAACGAGACCGAGTGGAATGATCTTGCGGAACCTAGTGAACAAAAATCGCGAAGTTGATCTCTAACGCCGCAGGTCAAGAAGC # Right flank : CTAACGATGGGATGGACAAGAACACCGCAAAGGGAGGTTCTCCCGCGCACGCGAAGAAGGTCAGAACTCCAGCCGCCGGATGCAAGGGCCGAAGTCAGCTCCTCGCGCCTTGCTTTTACTACGCCGGACGTCCGCGCTTCCCAAACCGGCGGCGCCTTGCTGCTTTGCTCCAGCCGCCGGGTATCGCAGGATTGACGATCGGGTCAACAGGGCGACGCATCAAGGTCACCCCATCGAGATCCACAGGCACCCAGTGATGGTCGTGGGCCACGAACGAGAGCCGCTGCTCACCGGGGACCTGGTAGACCAACAGAGCGCGGCCAACGCCTGCCATCTCGGTCACCCGAGTCCACAACCTGTCTCGCACTCGGGTGCTGACGTGCCCCACGTACACACCTGCGGTCAGCTCCAACAGCCACTGCGTCAAGTGCCCACGCAGCCCAGGTGGGCACGCAGTCAGGATGATGACGGTCATCAGAAGTCGACCTCACCGATGTCGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-52] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 3 458794-460424 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNZS01000007.1 Micromonospora parva strain NRRL B-2680 contig7.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================== ================== 458794 28 100.0 33 ............................ CGTCATTCCGGCCCCGGTGCACACCCGGGAAAG 458855 28 100.0 33 ............................ GCAGGCGGGGGAACGGGCATGACAGGTTGGGCT 458916 28 100.0 33 ............................ AGCCCGTCTCCGCGAAGCGCCTCGGGATGGACC 458977 28 100.0 33 ............................ GGGCGGAGCGCGCGTCCGGGTGGGCGGCCAGCA 459038 28 100.0 33 ............................ GGGCGGAGCGCGCGTCCGGGTGGGCGGCCAGCA 459099 28 100.0 33 ............................ GGCCTGCGCTGCCCGGAATCCGCTCTGCATGGT 459160 28 100.0 33 ............................ GGCGCAGCACTGGGACTGGATCACCTACCTGCA 459221 28 100.0 33 ............................ CCGCTGGCGCCCCGGCGAGTCCCGTCGAAGGGA 459282 28 100.0 50 ............................ CGCCACCCAGTACGGGCCCTGCGGGGTGGACAGCTGCTCCCCGCGCACGC 459360 28 100.0 33 ............................ CTGGGCCCGCGCGTACAAGGAGTTCCTCGAGCA 459421 28 100.0 33 ............................ CGGCGAATGACCCAGGCCGAAGCGCCCGTGCAC 459482 28 100.0 33 ............................ CCGGCGTCAGCCCGGCCCGCGTATGTCCGATGC 459543 28 96.4 33 ..A......................... GGTTCCCCTAAGGTTCGGTCCGCACAGCTGTTC 459604 28 100.0 33 ............................ TAGGGGAGTGACGAAACGGGGGTCACTTCGTCA 459665 28 100.0 33 ............................ CGGCGTCCACCGGGCCCTCCTCTCTTCTTGTGC 459726 28 96.4 33 ........G................... GCAGGACTGGTGGAACAACTTCCACTCGGAGCG 459787 28 96.4 32 .................A.......... CTTGATGCCGTGCAGCTCGGCCGCCTTGTGGA 459848 28 100.0 33 ............................ GCTGGCCCGCAACATCGGGGACGCCCTGGAGGA 459909 28 100.0 33 ............................ CCGGCCCGGTTGCGGGTTCGAGTCCCGCCTAGG 459970 28 89.3 33 .....T...............AC..... CAGCGCCGGCTGCTCGTAGCCCCGCAGGGAACC 460031 28 100.0 33 ............................ GGACCCCGTGGCGTGGGAGGTCCTGATGGCCGC 460092 28 100.0 33 ............................ GTTCACCAGCGCGTCGGGCCTGGTCGGGCCGCA 460153 28 96.4 33 ......T..................... CCGGACCCCACCACCCGGCGTGAAGCCGATGTC CG [460162] 460216 27 92.9 33 A....................-...... CACGCCCTCGACGCGTTGCGCGAGTACCGACGC 460276 28 92.9 32 ............T...........G... CGCCTGGCCACGCCACCAGTCGAAGTGCTTGC 460336 28 96.4 33 .....................A...... GCACGGCACGTTCGCCGACAAGGCGTATCAGCA 460397 28 85.7 0 .........A...GT.T........... | ========== ====== ====== ====== ============================ ================================================== ================== 27 28 97.9 34 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TCGCGGGCCGCTCATCGAGCACCGGCAGCGGAGCCCTGCGCATCGATATCAAACGGCTCGCCATCCCGGTACTGCCGCTAGACCGGCAGCAGGCGTACGGGAAAGCCTTTTGCCAGCTTGTTGAGTTTCGGACCCGACTCGATCGGGCCGCAGCAACCGGGGCCGCACTGGCCCGCGAAATTGGCGACAGCCTGACCGCCGGCGCCCTCGGTCCCCCGTCCTAATCAGACCGTCTACGTGCGGCCCACGTGTTCGTGTCCGAGCCGCGGATTCGCCACCGCTTCTTAGGCGCCGGTGTACGTGGCCTCACCTCCTCGCCGCGCCGGTGGGGCAGCCATAAGCGTTGCTAGTCGCTGCATGGGAGACTCATCAACTACGCTGCAGTAGGGGTCGTTTACGCTCGAGGACATACTCCCTCAGCCAAGACCAAGTGAGACGATCTTGCGGGCCTAGTGAATGAAAACGGCGGAGTTGATCTATAGCGCCGCAGGTCAGGAAGT # Right flank : CCGCCACGGGGTTGACTTCGTGGTCTCGGGTACGGCTCCCTGCACATGCGGTCCGCCACCGTGTAGTTCGGAAATGTCGTCTACCGGCCGCCGTGGCTCCGAGATGCTCGCCTTCCACATGTCAGCGGGCCCTTCCCATTCGATCCTTCGTTCGCGTTGACACCGCTGATTGAGGGAGGTCGCTCGACGCATCCACTTGGCGCATGCCAACGCAGAAACACTGAGCATCCTGTCTGCCATCGACCCGCCCATCGGGGAGCAGGCCACCGCCCGGCCCGCCACGGCCCTCGAACCTCGACGCCCCGTTCGTACGCTGGCGGGCCGGGCGGTGGTCTGCTCGGCTTGCCCGGGTCGATGGCAGACAGGATGTCGTCACCGCAGCCACCCACGGAGCCGGCGGCCGCGGACGACCTTCGGCCATCCTGGAGCCGGAGCGCCCCCGCCGGAGGCGCCGTAGCCGCGGCCCTCGCGGCGGCCGACCCATGGCACGAACGCCTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //