Array 1 23426-25041 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHES010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-28 NODE_40_length_40245_cov_3.790992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23426 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 23488 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 23549 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 23610 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 23671 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 23732 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 23793 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 23854 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 23915 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 23976 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 24037 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 24098 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 24159 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 24220 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 24281 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 24342 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 24403 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 24464 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 24526 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 24587 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 24648 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 24709 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 24770 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 24831 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 24892 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 24953 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 25014 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1060-2957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHES010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-28 NODE_62_length_28470_cov_3.425819, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 1060 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 1121 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 1182 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 1243 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 1305 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 1366 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 1427 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 1488 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 1549 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 1610 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 1671 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 1732 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 1793 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 1854 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 1915 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 1976 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 2037 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 2098 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 2159 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 2220 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 2278 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 2339 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 2400 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 2461 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 2522 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 2583 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 2644 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 2705 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 2806 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 2867 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2928 29 93.1 0 A...........T................ | A [2954] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //