Array 1 27378-28017 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSO01000031.1 Thiorhodovibrio winogradskyi strain 6511 scaffold0031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27378 29 100.0 32 ............................. ACGCTGCGGGCACGACTCCTGCTGCGGTGGGT 27439 29 100.0 32 ............................. CAAGCACTGCCGCATCTATCATTCGCGGATGA 27500 29 100.0 32 ............................. CGCTTGACGCAGATGGCCGGGTACTCCTGCTC 27561 29 100.0 32 ............................. TATTGCCAGCCCAACAATAATCCGACGCGCAA 27622 29 100.0 33 ............................. CTGCCATAAACAGTCGTTCCGACTTTCCACAAC 27684 29 100.0 32 ............................. GCTGTGGCTGCGAGCGTGCCCTGTGCCGATGT 27745 29 100.0 32 ............................. ACCGCGCTCGACAAAGCTGGCACCGCCACTCA 27806 29 100.0 32 ............................. TGCTAGGATCGGCGTCAGCGCCGGTCAATAGG 27867 29 100.0 32 ............................. AAAACCGAAACCCTGTCATTCCGCACCACGCT 27928 29 100.0 32 ............................. GAGCTTGGCCTGGACCGCGAGCGCGTCAAACG 27989 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 100.0 32 CTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : TCCAGCAAGTATGATCAGGCGCGTCTGAAAGTGGTCCGCAAAATGTACGAGCTTCGTTTTGGCGAAGCGCCACCGGAAAAGCGCAGCGTCGAGCAGTTGCGCGGCATTGAGGGCGCGCGGGTCAAGAAAACCTATGGTTGCTGGAGATTCGCGCGGGTGTCTATATTGGCGATCCATCCAAGCGACTGCGGGAATTCATCTGGCAGCAGTTGCTGGAAGGCGTTGAGCAGGGAAACGCCGTGATGGCCTGGAGCACCAACACCGAATCAGGTTATGATTTCGCCACCATCGGCGAGAACCGGCGAATGCCGGTTGATTTCGACGGCTTGCGATTGGTCAGCTTTCTTCCGCTGGAAAAAGCAACCGAGGCTCATGATGGCACAGCCACCCGGAGTGAGTAGTTCTTTAACAATGTGTAACCTGCTGTTTTTTCATGGGTCACGTTTGGTATATTTTTAATTATATTTTTCTTCCTTCTAAATTATATGGTTAGAGGAAGT # Right flank : GGTCGATGTGATGATGCCGCGCTCTACCGGGCGAAGCGCCAGGGGCGCAATCGCGTTTTGAGTGATCGAGTGCCGGGCTAGATCTAAGCCGTCGCCAGCCCCTCGGCGGGACCTGGCCGGCCAAACAAGAAGCCTTGGAAGGCGTCGCAGCCGTGTTTGAGTAGGAAGCTGTGCTGGGCGACGGTTTCCACGCCTTCGGCAATGACTGCGAGCCCGAGGTTGCGTGCCATGGAAATGATGGCATCGACAATGGCGGCGTCGCTGCTGTTCTCTAGCAGGTCGTGGACAAATGATTGGTCGATCTTGAGCTGATCGAGCGGCAGGCGCTTGAGGTAGGCGAGCGATGAGTAGCCGGTGCCGAAGTCATCGAGTGAGAAGCTGATTCCCAGCGCCTTGAGCGCTTCCATTTTCGCTGCCGCGTCCTTGACATCTTTCACCAGCAGGGTTTCTGTTAGTTCGAGCTTGAGCCGTTCGGGTGTGATGCCGTGGCGAGAAAGGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 160-493 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSO01000103.1 Thiorhodovibrio winogradskyi strain 6511 scaffold0103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 160 28 100.0 33 ............................ CGTGCTGAAGTCCTTAAGCTCTGGTTCAGCATC 221 28 100.0 33 ............................ CCCGTCGACCATCATCGGCGCAAGGACTCGGAT 282 28 100.0 33 ............................ CTTCAAATGCTCTCCCTGACTCACCCGCATACC 343 28 100.0 33 ............................ GTTGCGGGACTACCAGGGCGCCTCAATCGTTTG 404 28 100.0 33 ............................ CGACTATTCCGCCCACGAGCATCTGCTGCGCGG 465 28 100.0 0 ............................ | C [488] ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GTTTCCCCCGCGCTCGCGGGGATAGGCC # Left flank : AGGGGATAACCAACAGCCAGCTTGCACCATCACGGCTTACCCGTGAGGTTTTCCTCTGCCCAGGGGTTTCGCAACGCTCGCTCAATCGACGGGCGCGCGACCGAATGGGGAGCAGCGGGAATTGCTGACTGCCAGGGGTTGCGCTTGACAAAAGCGGCGG # Right flank : CCAGGTCATTGCCTGTGAGATCGCCGCCGAAATCGGTTCTATCCGATGTCAATTATCTTGGCCGCTTTAGCTGCCGCTGTTTTTGAGCGTGATGGACCTCTGTGCTCGGTGGTGGTTCAGGTTCTCCCTGGCGTTGTTGTCGCCAACCGCGTGCTTGGGTTGGCGATGACAACTACGCTGGGAGGTTTCTGCCGGTCGGCGCGGCGGGTTCGCTCTCCAGCGTGCTGGGGGTCTTTGACGCCGGCATTGTCGTGCTCGCCGGCGCCGGGCGCGCACTCCCGGACTCGGCGCCGAACTGATTGAGGGCCTGCTTACGCCGGTAACTGTCGGCGCCGATCTCGATGATGGTCGCGTGGTGGACCAGTCGATCGACGGCGGCCACTGTCATCATCGCATCGGGGAAGATCTGATCCCAATCGGCGAACGCTTGGTTGGAGGGGATGATCACAGTGGCGCGCTCGTAGCGATGGGCGATCAGCTCAAAGAGCACCTGCGTCTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGCGCTCGCGGGGATAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 10971-11365 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSO01000068.1 Thiorhodovibrio winogradskyi strain 6511 scaffold0068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10971 29 100.0 32 ............................. CTGCTGCGCACCGAGGCGCTCCTGAAAGCCAC 11032 29 100.0 32 ............................. CGACACTTGACCCGCGCATCCCGGTCTGCCGC 11093 29 96.6 32 ............................T CAGCCGCAGAAGCAGAACCCGCCAACAGCATC 11154 29 100.0 32 ............................. TGGAAGCCGGCAAGGCGCCAACGCCAGCATCA 11215 29 100.0 32 ............................. AGAAGGCATTAAGGAATTAGATGGCTATATCC 11276 29 100.0 32 ............................. GCATGACGGTATCCGCGACGGCGAGCAGCCGA 11337 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTTTCCCCCGCGCTCGCGGGGATAGGCCC # Left flank : TCGCCAAGCGCGCAGAGACCGATGACCAGACCATTGATCGTCTCGTCCGGCGCGAAGCGGCCAAGGTGTTTCGCAAGCAGGGCGTGATTCCGGCAATGATCGACCGCATCAAAAATGTGATTCGGATGGAGGAAGTTCATGCCTCTGGTCATGATCGTGACGCGTGACGTGGCGGATCGCTATCGAGGTTACCTCGGATCGCTGATGCTGGAAGTGGCGCCGACTGTTTATCTCTCTCCACGGATGAATCAAGGCGTGCGCTCACGCACCTGGGCTGTCCTGTCGCAGTGGTATCAAGCCGAGCCTGGTGGAAGCGTGGTGATGGTGTGGCGTGATGCCAATGCAACGGGTGGTATTGGAATTGCCACGCTGGGAACGCCTCCGCGAGAACTCATCGAAGTAGATGGTTTGTGGCTAGTCAGAAAACCATCGCAACCCGATCTTTAACAAAGAATCGTTTTCCTGTTTTTCCCTTGTAGTGTATGGGCTTAACTACAAGG # Right flank : GTGAAGCGAAAGAGGCGGCAGAGCGCGCGGCAGTTTCCCCCGCGCTCGTGTTAGCGGCTGAACAAACCTGCGGATAAACGGTGAAGTCCAGCCGCCCGACAAAGCGACGCCCTCGCTGAAGGCGAAGGGTGAGCCACCGAACAGCGAGCCGCGCCCGGTGGCCGGTGAAGGTCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGCGCTCGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 3633-6598 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSO01000081.1 Thiorhodovibrio winogradskyi strain 6511 scaffold0081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 3633 36 100.0 35 .................................... GCTGGCGACGATGTAGAAATCAATCGGGTTCGCTT 3704 36 100.0 34 .................................... AGCCGGTTTGTGCCGTCGATGTCGCGGGCTTCGT 3774 36 100.0 37 .................................... GCATTAGGCACTTGCGTCGACCTCATCGCCTCCAAAG 3847 36 100.0 36 .................................... AGGGGGAGATTCCGATTATCCCCGATCTGGGAGAAC 3919 36 100.0 35 .................................... CAAATAGCGGCGACTGTGCGCGCTCTGGTGGAGTC 3990 36 100.0 36 .................................... CTACGGTCGAGGTGCCGACATGGAAAATCGTTGGGG 4062 36 100.0 35 .................................... CGATATCGAAGGTGAGAAAGTAACAGCGTTTACCG 4133 36 100.0 35 .................................... AATATGCAGTTCTTACTATTCAAGAACCGACACGG 4204 36 100.0 36 .................................... CGGTCGCGGAAGACCCGGACGCAGTGATTGCCACCC 4276 36 100.0 34 .................................... ACTATGGACCATCTTTTATCGCGGATGTCGTTGA 4346 36 100.0 36 .................................... GTCAACACCAGCGCGCGCGATGGGATGGCGTCGGGA 4418 36 100.0 36 .................................... ATCCTAACCCATCGCGAGCGTTCGATCGGCGTCCAT 4490 36 100.0 36 .................................... CGGGCTACCTAACCGATCTGGTTGCAGGCTATAGCG 4562 36 100.0 35 .................................... TGGAAAGCTCAGGGGCCGCCCCCCTGCGGTTTCGA 4633 36 100.0 35 .................................... GCCGCATCGCACGCTTACAAGGCGCTGGATTGGAC 4704 36 100.0 36 .................................... ATTCAAAAGGAAAATCCAGAATGTCGAGATGTCGAG 4776 36 100.0 37 .................................... AATAAGCGCATGTCCAAAGCACTTTGGATTCTGAGCA 4849 36 100.0 34 .................................... GCGGGTATGGCGTATGGCAGCGCTATGGCAGAGG 4919 36 100.0 35 .................................... TCGGTCGGTGCGTCCGGTGCGGTCTGCATAACGGC 4990 36 100.0 34 .................................... TGCCCGGTCAGGCTGGCGAGTTGTTCGGCGATGT 5060 36 100.0 35 .................................... ATCGTCTGTTTTGTCTGGGTTTTTTGAATTCTTGG 5131 36 100.0 34 .................................... TAATGCGCGTGGCCCTGGATAGCTATTGCAAACG 5201 36 100.0 34 .................................... GGCTTGGCGGTGCCGGCGGGTTTATAGCCGGTGA 5271 36 100.0 36 .................................... TCCAGGGCGCCACTGAGGATGGCGGTGTCGATAAAG 5343 36 100.0 35 .................................... CCATGGCCGTCGCAGTCGGTGGCCGTGACGGTATA 5414 36 100.0 34 .................................... AGCGAAGACGCGATCCTGTTCGTTCCTGCCGGGC 5484 36 100.0 35 .................................... GTGTTAGGGCCAGGGCCTGCCAGTCATGAGGATCT 5555 36 100.0 35 .................................... TGGGCGGCAGCGGCCAGGATGAGGGCGCTGGCTTG 5626 36 100.0 35 .................................... TGCGCAGCCATGCTCGCTGCGACCTTGGCGGCGAC 5697 36 100.0 38 .................................... CACACCGCGTGCTGCCCCAGGAGACCAGCAAGGAGGCT 5771 36 100.0 35 .................................... ACCGCCAGGCCGGTCGACCGATCACGCTCGAGGGC 5842 36 100.0 37 .................................... ACTCGACGCAAGGAGAGGAAAGGAAAGGAAAGGAAAA 5915 36 100.0 37 .................................... CCCATCTATCAGCGTCCCGGCTCTCCCACCTGGTGGA 5988 36 100.0 38 .................................... CCATGAACCGAGCGGGCCTGAACCAATCTGAACTTGGC 6062 36 100.0 33 .................................... TTCCAGCAGAAGTTCTCTATCGCTGGTGTACAG 6131 36 100.0 36 .................................... GGTGCGGATCACAGGGAGGCGGCATTGGGTCGCGGC 6203 36 100.0 35 .................................... GCGTAGCACCCCATCGGGCATCCCCGTGGAGATGA 6274 36 100.0 36 .................................... CCAACCGCCAGTCTGAACTGGATGCCGCACAAGCAG 6346 36 100.0 35 .................................... CGGGAACCGATGGATCGGCTCACAAGTCGGCAGCA 6417 36 97.2 37 ...............T.................... CGGTGATCACATCTCCACTCGCCAGCCAGTCGGCCCA 6490 36 97.2 37 ....................A............... TCCTGGTGCGCAACGTCGTCGCCACCGGCATCCTCCC 6563 35 80.6 0 .....................TC.-C..C.C....T | T [6596] ========== ====== ====== ====== ==================================== ====================================== ================== 42 36 99.4 35 GTCCATTCATCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : AGTTACGATATTCGCGACCCCAAGCGCTGGCGCCGAGCCTACAAGACCTTGCAAGGCCACGGCGAGCGCATTCAATATTCACTCTTCCGCTGCCGCCTCTCGCGGACCGAGAAAGAAGCATTGCGCTGGGAACTGCAACAGATCCTCAGCCAGGAAGACGATCTGATGTTTGTCCACCTGTGCCCGGGCTGTGCGGCTGGCGTCCAGGAAAAGGGCAAGGATACGGGCTGGAGCAAAGCACCGACTCGCTATGAAGTACTGTGATTGCATGGACCTGGCGGTGGACCTGCCCCAATTTGCCCCATAGATCCTTAACAGCTGATTTATCATAGAAAACTGGCCGACGCTTCGGTCTAAGATACTTGCTGCATGCAATCAATTGAATCTACTCATGGATTTTCCCGCTTTGACAACCTGCTTGCGAATGCAACTGCATGCGTGCCAGGATCATGCAAACAAGCAGCAAAAATCTCACAAAAACAGTATCATGTAAAGTGGCG # Right flank : TCGAGCGTTTGACCGCCCCCGACCTGCTGCTGCATCGCGTCGAGATAGTCGTCCATCTCCTGAATGCTGGCGAAGATGCTCAAAGACGGCAAGGCATTGATGATATCGAACACCTTGCGAACCGGCGGCTGCAAATGCATGAAACTGACCTTACCGTCGATGGCCTTCATGTCCTTCTTGGCCTTTAACAGCACGCGGATTCCTGCGCTGCTGATGTAGTTCAGTTTCTCCAGATCAAGAACCATCAGATGCGGCTGCTGTGCGATTACTTCATCGATCTGCCGCTCAAAACCCGGCGCCGTATCCGAATTGAGCGAACCTTCCGGGTAGACGATGTAGGCATTGTCTCCCCTGGATTTCACGCTGACGCTAAAGCTCATATTATTATCCTCGCCGACAAGGCCGGCGGTTGATGAAGCCACAACCACAAGGTGCCGAGATCCAAAGGTACAGGCAGGGATCCCAGGCATCCGGCACGAACTCAATCGTCCGCACGAATC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCATTCATCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //