Array 1 15765-16573 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVS01000002.1 Pasteurella multocida strain HNA13 Contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15765 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 15825 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 15885 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 15945 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 16005 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 16065 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 16125 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 16185 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 16245 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 16305 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 16365 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 16425 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 16485 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 16545 28 96.4 0 ........................A... | A [16568] ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.5 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATACTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 92616-91389 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVS01000005.1 Pasteurella multocida strain HNA13 Contig005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 92615 28 100.0 32 ............................ TTACCTTCCGTCATTGTTGAGCCTCCGCTAGT 92555 28 100.0 32 ............................ GCTACAAGCAAGCGACGATAGTTTTAATTTTA 92495 28 100.0 32 ............................ AAAGCCTATGAACACACAACCCTTGCACAAGT 92435 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGCCATAATGGCGTA 92375 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 92315 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 92255 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 92195 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 92135 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 92075 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 92015 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 91955 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 91895 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 91835 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 91775 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91715 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91655 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91595 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91535 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91475 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91415 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //