Array 1 88329-89821 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFV01000005.1 Salmonella enterica strain BCW_2177 NODE_5_length_269576_cov_3.64096, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88329 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 88390 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 88451 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 88512 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 88573 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 88634 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 88695 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 88756 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 88817 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 88878 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 88939 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 89000 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 89061 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 89122 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 89183 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 89244 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 89306 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 89367 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 89428 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89489 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89550 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 89611 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 89672 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 89733 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 89794 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105954-107735 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFV01000005.1 Salmonella enterica strain BCW_2177 NODE_5_length_269576_cov_3.64096, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 105954 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106015 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 106076 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 106137 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 106198 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 106260 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 106321 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 106382 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 106443 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 106504 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 106565 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106626 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106687 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 106748 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106809 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106870 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106931 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106992 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107054 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 107157 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 107218 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 107279 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 107340 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 107401 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 107462 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 107523 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 107584 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 107645 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107706 29 96.6 0 A............................ | A [107732] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //