Array 1 52787-56714 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWHC01000012.1 Klebsiella pneumoniae strain VRES0139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52787 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 52846 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 52907 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 52968 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 53029 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 53090 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 53151 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 53212 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 53273 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 53334 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 53395 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 53456 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 53517 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 53578 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 53639 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 53700 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 53761 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 53822 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 53883 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 53944 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 54005 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 54066 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 54127 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 54188 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 54249 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 54310 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 54371 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 54432 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 54493 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 54554 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 54615 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 54676 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 54737 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 54798 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 54859 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 54920 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 54981 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 55042 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 55103 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 55164 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 55225 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 55286 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 55347 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 55408 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 55469 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 55530 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 55591 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 55652 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 55713 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 55774 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 55835 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 55896 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 55957 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 56018 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 56079 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 56140 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 56201 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 56262 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 56323 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 56384 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 56445 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 56506 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 56567 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 56628 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 56686 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //