Array 1 106403-105763 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPQ01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1511 NODE_3_length_344210_cov_4.20595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106402 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106341 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106280 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106219 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106158 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106097 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106036 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 105975 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 105914 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 105853 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 105792 29 96.6 0 A............................ | A [105765] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124149-122535 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPQ01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1511 NODE_3_length_344210_cov_4.20595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124148 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 124087 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 124026 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 123965 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 123904 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 123843 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 123782 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 123721 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 123660 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 123599 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 123538 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 123477 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 123416 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 123355 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 123294 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 123233 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 123172 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 123111 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 123050 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 122989 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 122928 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 122867 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 122806 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 122745 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 122684 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 122623 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 122562 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //