Array 1 4274-3767 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKDF01000048.1 Acinetobacter baumannii strain TUM16644 sequence048, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 4273 27 75.0 27 T...C.-....A......AG..G..... TTAATGCTTAGCATTGATTGATATGTG 4219 28 85.7 29 ...T.G.............G.......T ATAGGGCAATTCTGATCTTAAGTATTTAT C [4211] 4161 27 78.6 39 ....GC..C.AT...-............ GCCCTATTTTTCATTTTTCCTTCAAAAGTAATTTTGAAA G [4143] 4094 28 85.7 32 C..T......A.C............... CAGCGTTCTGCTTTACCGTTTACATATCGCGG 4034 28 92.9 32 ............CC.............. TTGCTTAGGCAAATGCACTGATTTTAAAGAAG 3974 28 100.0 32 ............................ TATCATGAACATTGTTCCTTGACCCACGGACA 3914 28 96.4 32 .........T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 3854 28 96.4 32 ...G........................ TGAGGGTGCCACACATTGGCAGGCTGGAGTGT 3794 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 9 28 90.1 32 GTTATTCATCGCATAGATGATTTAGAAA # Left flank : TGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTATTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGTTCTTACTCCTCACAAATAGTAGTGATCGGAGGTAGATCTAGGCCGTGTTGTAGAGTCGAGTATGACAAAAATTTAAAATGTTGTGCTATCATTTGGATAGTCCTTATTTAAGTAGTAATAGCTTTGAAAATGGACAAAAGCAGGTATGAAGTTTGGTCACGGAATACCTGCTTTTTTTTATGCCTTTTCATAAATTAAGATATATTTGTCCAAAATCCTTGTCAAACATTATTTTTATTTAAATAAAATTTTACTATCAATCTTATCTAAGTATTAAGGGTAGTGATTTTTTAAATGAATATTAAGTATTCCTAATTAAGATTTGTTATGATACAACTCTTACATAG # Right flank : ACATTCAAAGAGGCTCATCGAATCCAATCGAATTTTATCATCGCTCAGATGATTCAAAATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCTGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGT # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9830-12919 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKDF01000048.1 Acinetobacter baumannii strain TUM16644 sequence048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9830 29 100.0 31 ............................. TAAGAAAGGGGGCGTTAAAGAAGTAACTCGA 9890 29 96.6 31 ............................T TATCCTGGTGATTCAAGCCCATATCTTGAAC 9950 29 100.0 31 ............................. TAGTCGCTTGCGGTACGATCTTAGCTGCACC 10010 29 100.0 31 ............................. AATCAGTTTTAAGGTGTAACTGGTGCAATCA 10070 29 96.6 31 ............................T GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 10130 29 96.6 31 ............................T AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 10190 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 10250 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 10310 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 10370 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 10430 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 10490 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 10550 29 100.0 31 ............................. CAAGCGATAACTTGCCGCCAATCACTGTTTA 10610 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 10670 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 10730 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 10790 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 10850 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 10910 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 10970 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 11030 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 11090 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 11150 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 11210 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 11270 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 11330 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 11390 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 11450 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 11510 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 11570 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 11630 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 11690 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 11750 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 11810 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 11870 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 11930 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 11990 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 12050 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 12110 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 12170 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 12230 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 12290 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 12350 29 96.6 31 ............................T GAAAAACGTAACGCAGAACTACAAGCTGTTA 12410 29 96.6 31 ............................T TCCAATTCGCATAATGAGCACTGATGTTAAA 12470 29 100.0 31 ............................. AACGGTAAAGTCATTCCATTTGTACGTTTAT 12530 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 12590 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 12650 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 12710 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 12770 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 12831 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 12891 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 52 29 98.1 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACAAATATAATAATATACTGATTTATCTTAATTAATTTTTATAAAAAAATCCCAGTGTACATGACAGTGTACAAATTATATGTTGCTGGCCTATTTCCTTCGGGTTTGGTTGCTATATACGGAGTACAACTCATGTATTAAACACCTTACTGGCAATCCAGTAACACTACCCTACTCCACCACTTACACAGCATCACTTCGACATCTCGTCAACGCAATTTTGCGTTCGGCATTGTTTTCAAAAGTTTATCCAGAATTAGACGCACCTAAAACCCGATAAAACCCTATCAACTCTTATCATTAGCTCTTAATAAAACGTAGTCTTTTATCCAGGTAGCTACTACGAATTTCTCGTAGTAAGGCACTGTATTTGAAACATGGAAATGAGATTCCTTAAATTAGCGATAAACCTTGTTGTATATAGCTTCAA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 85651-80816 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKDF01000007.1 Acinetobacter baumannii strain TUM16644 sequence007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 85650 30 93.3 30 ............................AG GTGGAAAGACTACAAGTGATGTTGGTGTAG 85590 30 100.0 30 .............................. GGTCTTCTGCCATAGCTAAATCTTCAGGAT 85530 30 93.3 30 ............................CA AGTGAATTTGTAGCCATTTCTTTTCTCCAG 85470 30 100.0 30 .............................. CGACTGCATCGACATAGTTGTATTCATCGA 85410 30 100.0 30 .............................. CCAGCTATCTACAATATCAGCCCAGTCTTG 85350 30 100.0 30 .............................. TAAGTCAAAACCAGTTTGATGCTTTGGTTT 85290 30 96.7 30 .............................C CAAAATTGGCATTTATCCAAGCGACAGGAA 85230 30 96.7 30 .............................A CATCTCCTTGCTGATAACCAAAGAGATTAA 85170 30 96.7 31 .............................C GAATTCCTCGAAAGATGAATCAATGACAATT 85109 30 100.0 30 .............................. CATCATTTAGCTTTTTCTTGAATGTCTTAA 85049 30 100.0 30 .............................. CAGTATGATGCTGAGACTTTTGGAAACGTA 84989 30 96.7 30 .............................G GCGAATCCAATCATTGGTGAAGACGACCTA 84929 30 96.7 30 .............................C AATCTTTATCGTCTCGAGAACTAGCAGAGA 84869 30 100.0 30 .............................. ACCCTTCACATTTAGACATGTGAAAAGCCA 84809 30 96.7 30 .............................G GCTACAGATCTTCATTATAGCCATTACGCC 84749 30 96.7 30 .............................G AACGTCAGATCTTTGCTGACATCGAGGGGC 84689 30 93.3 30 ............................AA CCTTCACCCGCAACAGTAGTTGCATTAGCT 84629 30 93.3 30 ............................CA GGCAAATACTCAGCAAAAACCAAAAGAAAT 84569 30 100.0 30 .............................. GCACTAAACGCTTAGTTACAGACCAACCTT 84509 30 96.7 30 .............................G GACAACATGTGTTGTAAAAAGTCCAATTCC 84449 30 100.0 30 .............................. TATGCACCTGACGAAATTTATTTTAACAAC 84389 30 100.0 30 .............................. AGCACCACGTGACCAAACTAACTGACGCTG 84329 30 96.7 30 .............................G CTGCTTGAACAACATGAATTGCCCATTCAG 84269 30 93.3 30 ............................AA AAATATTGATACGATGGATTAACAACAGAA 84209 30 93.3 30 ............................AG AAGCGTCATGAATATTTGGTTTGGCTTGAA 84149 30 96.7 30 .............................G ATCATTAGTGCCTCTTCGGAAATCAACTTT 84089 30 96.7 30 .............................G AAAATAATTAAATGGTCTATCACCGTCTTC 84029 30 93.3 30 ............................AG TAGATGCAGCACACAGCAATCAGGGCGCTC 83969 30 93.3 30 ............................AG CGCGGAAGAGCATTCGGGTGAGTTGGATTA 83909 30 93.3 30 ............................AG GCAAAAGGAACGGCTGGCTAACGCCACTAT 83849 30 93.3 30 ............................AC ATTCCAGCAAACAACAGTGTAGATCCAATT 83789 30 96.7 31 .............................C TTTCACAAAAAATGATGGTTATTTTGAATGT 83728 30 93.3 30 ............................AA TAAACAGCATTTCATCAGTTGCGTAATAAA 83668 30 96.7 30 .............................C CAAAAGAGCAAGCAGAATTTAGTGCATGTA 83608 30 93.3 31 ............................CA CCAACCGACAATGTAGCATCGGCAACTAAAC 83547 30 96.7 30 .............................A TGACACGCTATCAAGTGACGGTGCAAATAA 83487 30 96.7 30 .............................G ATCTCTCTTAGCTTTGTATTCAGGGTCTAA 83427 30 96.7 30 .............................G CTACAGATATAACTAATCAGTTAAATAACT 83367 30 96.7 30 .............................A TCCATTTTCTGATGGTGGCGCATTCTCTTC 83307 30 96.7 30 .............................C AAGCAAATCCCGATGATCCTACAGCACCTA 83247 30 93.3 30 ............................AC AAGTTAGAGCTATTAGAAAGAATTATTTAA 83187 30 100.0 30 .............................. TCGGGGTGGTTTTATTTTGCCTAAATTAAT 83127 30 100.0 30 .............................. GTATTGTTGGGTTTCTAGTTACCAGAGCAG 83067 30 96.7 30 .............................G ATTCAGTAGGTGCTAACTGGTATAACTTGA 83007 30 93.3 30 ............................CG TTGTTGGGTCTTGGTTGCGTAGTGGCCCCC 82947 30 100.0 31 .............................. ACTAGCCCATATGTCTAAACCGAATCCACGC 82886 30 96.7 30 .............................A AACCATTATTAGGGTTTACGGTATTACTTG 82826 30 93.3 30 ............................AG TCCATAAGACCCTCCATTTGTTTATATCTT 82766 30 93.3 30 ............................AG AAGGGTATAGCAAATATCGTGATGGAAATG 82706 30 96.7 30 ............................A. CATCGCCAGCAACAAACTGCAATGAGCCAG 82646 30 100.0 30 .............................. GGTGTGATCATCAATACAGATGGGACAGGT 82586 30 93.3 30 ............................CG ATAGAAGATACAGAAGAAAATAATGCTATT 82526 30 96.7 30 ............................G. CAACCAAAGAACCCCAAGCAAATCGAGCAA 82466 30 96.7 30 ............................A. TATCTAAGCGTCCCATTAGAAAACCTTTAT 82406 30 100.0 30 .............................. TCAGATGAAACCATACGCACTAAATGCATT 82346 30 96.7 30 ............................A. GTAATCTTGGTATGGGAGGTGTAAAGCCAG 82286 30 96.7 30 .............................G TTGACCCATCTATTGATGCATCTGTAAATA 82226 30 93.3 30 ............................CG ACTGCTCCTAAAGCTCCGCCGACTGACATT 82166 30 93.3 30 ............................CC ACTGTAGTACGAGTAACGTTACCGACTAAA 82106 30 100.0 30 .............................. TTTCACCTGATGGATGCTGTATTAAATCGC 82046 30 96.7 31 ............................A. GACATACAAACCCCTCAATAAAAGATGGGGC 81985 30 93.3 30 ............................AC AAATCTTGATGACATGCTCAACAAAACACA 81925 30 93.3 30 ............................AG AGGGTTATGTTTTGGTTTCTAAGGATAAGT 81865 30 96.7 30 ............................A. CATACATTAACTTTAAATAATCATTCTGAC 81805 30 93.3 30 ............................AC ATGAAAAACTAGCTTCCACGACATCAATCC 81745 30 93.3 30 ...........T.................C TTGCTGTGCATAAGCCTGTAAGTTATTTAA 81685 30 93.3 30 ............................AG TTGCCCGGATCACGACGATCATTAGAATAA 81625 30 100.0 30 .............................. GGAGTCATCAATAAGAAACAATCCATTTAA 81565 30 96.7 30 ............................A. CTAATCGATGGTGAAGATTTTGAACAAGAT 81505 30 96.7 30 .............................G TTACATGCCCAATTGGTTGGCGCATGTCAT 81445 30 100.0 30 .............................. CTAAGCGAAGGCTAACGCTCACATTCAAAA 81385 30 100.0 30 .............................. GTTGCGGCTCTCGCATGATGTGGTTTGATC 81325 30 93.3 30 ............................AA CTGAAAAGATGTTGAGTGCAGGTTGTTCTT 81265 30 100.0 30 .............................. GATGCTGAAAACTTCACAGCAGGCAATCCA 81205 30 96.7 30 .............................G TAAAGGATGTGAGGAACGTCGTGAGTGGAT 81145 30 93.3 30 ............................AA CTGACTAGTGATTTGAGGAATGTGCTCACC 81085 30 93.3 30 ............................CA AACACAGCATTATTGGGCCTTCAATACGAT 81025 30 93.3 30 ............................GA TGCAGGCGGAGTCTGCTATGCGACTGGTAC 80965 30 90.0 30 .................T..........AA ATAACCACGGTTATGGTAAGTCACTTTTAC 80905 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 80845 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 81 30 95.7 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAATAGACAAAGCCGAACAGCCTGCTGAAGTTGAACAGATTAAACAGTTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //