Array 1 50-1281 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYRM01000018.1 Salmonella enterica strain CVM 43795 43795_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 111 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 172 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 233 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 294 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 355 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 416 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 477 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 538 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 600 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 703 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 764 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 825 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 886 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 947 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1008 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1069 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1130 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1191 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1252 29 96.6 0 A............................ | A [1278] ========== ====== ====== ====== ============================= ========================================================================== ================== 20 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGCCAGTGGGCGTAGCCAGCTCATCGCTATTTTGCG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 209-1640 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYRM01000059.1 Salmonella enterica strain CVM 43795 43795_contig_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 209 29 93.1 32 .C.G......................... GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 270 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 331 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 392 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 453 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 514 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 575 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 636 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 697 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 758 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 819 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 880 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 941 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1002 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1063 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1125 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1186 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1247 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1308 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1369 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1430 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1491 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1552 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1613 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCCGCTAGCGCGGGGAACACAATCGCCAGCCTCGGAAATATTCCATCCTCCGCGGTTTATCCCCGCTGGCGCGGGGAACACAGGAACGAAACGAGCCTGGACCGTTGAAGAACGGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGGACAAATCTTTTTTTTCCTGTTCCTGTTCGGTTTATCCCCGCTGGCGCGGGGAACACGGG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //