Array 1 5572-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXHQ01000013.1 Xylanivirga thermophila strain SYSU GA17129 Scaffold12_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5571 30 100.0 35 .............................. AAAAACATAGGAAAACCTCCTTAATCACACAAACA 5506 30 100.0 36 .............................. AGGGTAATGCTAAGTTATCGAGTATTTTAAAGGCTA 5440 30 100.0 36 .............................. TTGTTTCAGGATTCTTATACCCACATGCACTACACA 5374 30 100.0 36 .............................. TGTTATTTCCTGAACAACGTTTTCCAAGTTTCGCGT 5308 30 100.0 36 .............................. ATATAATTCTTTACAAGCGTTCTAAAAGCCTTTAAA 5242 30 100.0 36 .............................. TGGAATCCTATTACAGGATGTACTCCAGTATCAGAA 5176 30 100.0 36 .............................. GAGATTATTCTATCGCTGAAGAATGCATCCCTGCTG 5110 30 100.0 37 .............................. GAGGTTGAAAAGAAGATGAAAAAGAATAGGAAAAGAG 5043 30 100.0 35 .............................. CCAAAGTTATAAAAGCACCCATTTTAATACCTCCA 4978 30 100.0 36 .............................. TTATACTTGCTATTGGCACTGCTTTAAATGCATTGG 4912 30 100.0 36 .............................. TCGATGACAACTAAGGTCTGCCCTTCTACGCCCAAA 4846 30 100.0 35 .............................. GAAAAAATTTGGATATATTTCTCTTGGCAGAGTGA 4781 30 100.0 36 .............................. CCAAGTACCTAGTAAAATAAACTATGATAAATTGGC 4715 30 100.0 37 .............................. CCAAGCATCACATTCTAGCTGTAATAAATCACAAAAA 4648 30 100.0 36 .............................. TTGATAATTTGTATTGTAATTTGCTTTTAGTTGACA 4582 30 100.0 36 .............................. TAAAAAAAGTTTATTAAAAACAAAAAAGAATGAATA 4516 30 100.0 36 .............................. AGTCTTTTTTTAAACTTTTTTAAAATCTTTTTTTTG 4450 30 100.0 36 .............................. TTATATATCTCTTTTCCATCTTTAATTGTTTGTTGA 4384 30 100.0 36 .............................. ATCAGCTCCAATATCAGAATATGTAAAGGGACAAAA 4318 30 100.0 35 .............................. ATTTTTCCTGAGCTCTTTTTATAAGCAGACACGAA 4253 30 100.0 36 .............................. ATAAGTTTTTTATCTCTTTTTCCCATTTTTTATTGT 4187 30 100.0 36 .............................. ACGCAACCAACAAACCACTATGTCGCTTCAAGCACT 4121 30 100.0 37 .............................. TGGATGCAGAACAAATAAAGCAGAAGTTGCAGAGTAA 4054 30 100.0 36 .............................. AAATCTATTCTGCCTTGAACTGCAAAAACAAAATAT 3988 30 100.0 35 .............................. GTTTTTTAGTATTCATCATACTATTGATTTTTCTC 3923 30 100.0 37 .............................. CTCTGATTTTGAAATAAAGACACTAGCCCCAGATGGC 3856 30 100.0 35 .............................. TCCATGAGATTTGGGCGCATTTTCTGCCACAATAT 3791 30 100.0 36 .............................. TCGCCATTTGTAATGAGGGCAGAAAAGACAATAAAA 3725 30 100.0 36 .............................. ATTCACTGTATACGCTTCCTGCTGATATTGCCATTC 3659 30 100.0 36 .............................. TAGTAATTTTTGATACCTACGTTTTCTAAATACCAA 3593 30 100.0 35 .............................. ATGGTTTCATTAGCTGCTTGATTATCCTCTAATTG 3528 30 100.0 35 .............................. TGGTTCTGGTGTAGTGTGCTGTGTATTACCTGCTG 3463 30 100.0 36 .............................. TCGTATGGAGAACGGGCGACACTTCGCCTCTGACCT 3397 30 100.0 36 .............................. TATGCTTACAAATTAGAGGATGAAAACTAATAAAAG 3331 30 100.0 36 .............................. TAGTCGGAGACGTCGAAGGGCTAGACAGTTTTGAAA 3265 30 100.0 36 .............................. ATATTAGCAAGGGACATAGCAGAAATTCACAACAAA 3199 30 100.0 34 .............................. TTCTCTGATATGCCTTCTGCATCTCCGGCAAATA 3135 30 100.0 37 .............................. CGGGCTAGATTGGCGCTATAATACTCTGCCATACCCG 3068 30 100.0 36 .............................. GTATATAATTTTACTATTTGTATATTATTGCGTGTG 3002 30 100.0 36 .............................. TTGGGTTGGAGTATTGTAGTCCGTACCCTTACGTTT 2936 30 100.0 37 .............................. CAGTTAGCAAAACCCTTATCTATATTATAGTTTCACA 2869 30 100.0 37 .............................. ATAAAAGAAAACAGCATAAATGGCGCTGTCAAAAACA 2802 30 100.0 36 .............................. GGACATAGAAGATATGGACATAGGTGGTGGCTATGT 2736 30 100.0 37 .............................. ACATTGCGATCAAACCGTCGGTAACCTTGCTTTCTGT 2669 30 100.0 37 .............................. TCTTCCCGTACTTTTCCCAAATGTTGCAATTTACTAT 2602 30 100.0 36 .............................. ACGTCAATTATCAAGAAAAAAGATAGGCAGTAACAG 2536 30 100.0 36 .............................. AATATGTAGTGAATGTGGATATAAAAATTCTGATGT 2470 30 100.0 35 .............................. TGCGTAAGCAAATATCAGATTTACAACAAGATTTA 2405 30 100.0 36 .............................. TCCTAATGGGTTATGTACAATGATACCGTGTATACC 2339 30 100.0 37 .............................. TTGGGGCAAGTACGGACTGAATTATATAAAATTCAAA 2272 30 100.0 36 .............................. CCTTGTTCGCAACATTATTAATTATAACCATATTAG 2206 30 100.0 36 .............................. GCTTTTTACCGTGGGCGTGGCAGAGAATACGGGGAA 2140 30 100.0 36 .............................. CTCTATTGGAAAGAGTTCCCCCTCACCGGTCCCTGG 2074 30 100.0 36 .............................. CCAGATTGAGGAGTGTAAGGGGGTAAAGAATTGATT 2008 30 100.0 35 .............................. CCTTTTACGCCTTTGATTATATAATCGCCTACGTT 1943 30 100.0 36 .............................. GAGAACGGGGACAGAAATCCGTCCCCGACCCTGCTT 1877 30 100.0 36 .............................. ATATATCACCCCCATTCATATTTCACAGTTAGCAAA 1811 30 100.0 36 .............................. TTATAGATCATAAAGCACTTCTATTCCTGCCAACTT 1745 30 100.0 35 .............................. ACCTTCTCAAAGGCCTCTTGGAATGTGTCTATATC 1680 30 100.0 36 .............................. TTTTCATAGCTATAATAGGCATAGAATATAATCTCC 1614 30 100.0 35 .............................. TGGTATGGCCCGCCTCCACCAGTAAAGGTCACAAT 1549 30 100.0 36 .............................. AGAAGTTCTTCTGCTTGCTTTTTACCTCTAGGTCCG 1483 30 100.0 36 .............................. TTTATTTTTTCTCTGCCCCTCTTCTGCGCCAGTTAC 1417 30 100.0 36 .............................. AACATTGAACCAAATACAGACAAATAAAAATCAGTA 1351 30 100.0 37 .............................. TCTAATGTACCCTCTTGGTAAACTAAAGAATTAGCAA 1284 30 100.0 36 .............................. CAGCAAAACCTCCTCGTATGTTGGTTTAACAAATCC 1218 30 100.0 35 .............................. TGTATTTTTCTATATCTCTACCCAGTTTCCGCAAA 1153 30 100.0 36 .............................. GGCAAGTAATGTGTTTATTTAGTGGAGTATTGTACT 1087 30 100.0 36 .............................. TCTATATAAACACATCCATACTGGCCACCTAGAGCC 1021 30 100.0 35 .............................. TTCCTACGGGATACAAATACAATCTTCCACCTTTT 956 30 100.0 36 .............................. TTTCTACAGTAGATAATACTTCTATATGTGTTGATA 890 30 100.0 36 .............................. CTGCGTCTAAGAACTCTTTTTTGTCATGGTGTCCTT 824 30 100.0 36 .............................. AAATTCCACCATAAGCAGTTAACCTCCTACAGGCCA 758 30 100.0 36 .............................. CTTTATAAAACTTTTAAAAATATACGGTATTTGGTT 692 30 100.0 37 .............................. TGATGAATATTACAACCCAGATACACCAGATAAATCG 625 30 100.0 37 .............................. CAGGTGATAAAGGAGACAAAGGAGATACTGGACCTAA 558 30 100.0 36 .............................. ATTACAAATTTATCTAATGCCCAATCCGCATCTTCC 492 30 100.0 36 .............................. TTGGTTTATTGTGTTGCCATATACTCCAATTTTCTT 426 30 100.0 36 .............................. CAAAACCACTATACAAGCTACTGAATGAGGCTTATC 360 30 100.0 36 .............................. AGGGTATTAGTGGAGTGGTAGACGGTCTATCAAAAA 294 30 100.0 36 .............................. ACGGCTACATTCTCATAAACGACGACGATTATATTT 228 30 100.0 36 .............................. GGCACTATAATAGCCACCAGTGATGGTAAAACGATA 162 30 100.0 36 .............................. AGCCAAGTCAAATACTGATTAAATAATGTTGTAGTA 96 30 100.0 36 .............................. AACTTCAGTAGCAACTTGGATATTCCCAGAAATGAA 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 85 30 100.0 36 GTGTAACCTATACATAGGATGTATTGAAAT # Left flank : TTAGTATGGAGAGAAAAGCATGAGAAAAGTCAAAAATTATAATTATAATTATGCAATTTTGTTTTATGATGTTGGTGAGAAGAGGGTACAGAAAGTATTTAAAATCTGTAAGAAATATTTCAAACATCACCAAAAATCTGTTTTTAGAGGGCATATAACTCCAGCTAATCTAATAGCACTAAAGTTAGAATTGAAAAATATTATAGATGAGGATTATGATTTTATAACAATTATAGAGATGGTAAGTGAATCTGCTTTTAACGAAGAAACTTTAGGCAATGGTGGAAAAGATAGTGAAGATATATTTATTTGACTTTTTCCAAGTATTAAGTTAAAATGGTGTTTATAAATTGGCGGGAATCAGCATGGTTAAAGGGAAATGTGTAATAAATTTATTAACCTACTTTTTAGAAGGCTTCGGTTGGAAAAAGAAACGTCAAATCTGCTTAAAAGCAGGAATACGGCGTATTTGATATTTACTAAATCTTTATTTTTTAATA # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTAACCTATACATAGGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 164-2035 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXHQ01000014.1 Xylanivirga thermophila strain SYSU GA17129 Scaffold13_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 164 29 100.0 35 ............................. TAAGTATAACGTGGCATAGCTTTAAAACAATTCGA 228 29 100.0 37 ............................. TGCATTTAGAGACTGTGGGTTAATCTCTACATCTAAT 294 29 100.0 36 ............................. TATCAATGGAAGGGGAGAATGTTTCCATATCTTTTA 359 29 100.0 37 ............................. TCCCTTGATGTCTAAGTCTTGCCTGTCGCTCCACATC 425 29 100.0 36 ............................. TCTTGCAACTGTTTCCAAATCTGGCGAATTAATATA 490 29 100.0 37 ............................. TCTAATCGTAAACATATTTAACGGTGGGGATGTGCCG 556 29 100.0 37 ............................. TACTCGACACCTGCAATATCTGTGTCTTTTGTAAATA 622 29 100.0 36 ............................. TTATAAACTTGTGGAAAGCGCCTTAACCTTTGATAG 687 29 100.0 37 ............................. TAATGTAGTGCGGTGCATGTCCACACCGATTATATAA 753 29 100.0 37 ............................. TCTGATTCTTTAAGGGAAGAAGCCAAAAAAGTAGGAA 819 29 100.0 37 ............................. TTGTGCAAGAATGAGAATGTTTCAATCGGAAGGATTC 885 29 100.0 37 ............................. TGCATGTAGCCCTAGACGGTGAAGGCCCTATTGATAT 951 29 100.0 37 ............................. TATGAAGTCTTTTACCACTACGAATCTCCCATATACT 1017 29 100.0 37 ............................. TACAAATGTAGTTAGCGTGGATGCAGATGCAGATTTA 1083 29 100.0 36 ............................. TATGAAAAATCTAAAGAAATGGTTAAGGGTATAAAT 1148 29 100.0 37 ............................. TTTGATACTAGAGCAAGATTTATGTTTGGTAGAGAGC 1214 29 100.0 37 ............................. TACACTAGAAAGCCGAGTATCTACAGCAGAGCAAAAA 1280 29 100.0 37 ............................. TACTCCATTCTTTAAAGGAAATATTTGCGTTTTCTTG 1346 29 100.0 37 ............................. TATTTTTCGATGTCCTTTTCTAAGAATACGTTTTGTT 1412 29 100.0 37 ............................. TATAGTTCTGTACCTTCTACTATATTAAATACCCACT 1478 29 100.0 37 ............................. CAAGGTGGTGACTAGAGCAGATGGGTGCTGAAATGTA 1544 29 100.0 37 ............................. CATGCTATTAGACCAAACCAACCCGTTATATAAGTTA 1610 29 100.0 37 ............................. CACATTTGACTTTATTCCCAGATGGTAAGTGGGTTAC 1676 29 100.0 37 ............................. CGGGAATCTAAAACATATAAGAAAGTTAGACAATGCT 1742 29 100.0 37 ............................. CTAATCTCACCAAATACGGCCGCTTTATCATCCCATT 1808 29 100.0 38 ............................. CTAAATTTAAACGAGATTTAGCAGAAGGCACATATAAA 1875 29 100.0 37 ............................. CTTTACTGTTTTTAATGGACTGCAATCAAAATTGTTA 1941 29 100.0 37 ............................. TGGATGAAAGTACAACCTTTTAGCATAAGGTGTATTG 2007 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 29 29 100.0 37 GTGTAACCTATACATAGGATGTATTGAAA # Left flank : GAGCGTAGCGAAGTGCATTTTAGGCTTGACAACTTTGCTAAATGGTAAAATTTAAGATATTTTTCTTAATTATTATAGCGATTGACTTTCTGGAAGAAAAAGGTGCCAATAAAAACTTGACACACACTTCCATAATTGCTTAGTTGATTTACATATACAAATGG # Right flank : ATATTTATTATGATTGCTCTTAATATTATTTTGCTGGTCTTTTCCTTCTAGATTATTTCCAGTATGCCGGTCTTTTATGTTTTAAATATCGGACAGTTTAATATTTTATCTTATCCATAATTATCAAAATGCTATAATAGCAGGTATATTTATAGCAAAGCTACTTTATAAAATAAAAGTTTGTAACAAACGACAAGTTTCAACATAATATGTATTAGGGGAAACCCACTTTTTAAGGAAGGAGTGCTATTATGGCAGATTTAGATAAATCCATGGAGAATATAAAAGAATCTAGTGAGCAAATAGCTAGTTCTTTAAATGATAAAGAAGAGTCCATTCATACAGTTAAGCCTGAAGTTTTATCTGAGATAAAAGAAGCTTTAGAGGATAAAGTAATAGCTGAATATGTAAGTGAGGACTTGAACGAAAGTGAAAAAATAGAGTTGAAAGGCTGTAGATGTGGTGATCCACAACAAAATCAAGAGACTCCTCAAGCATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTAACCTATACATAGGATGTATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 34-1717 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXHQ01000072.1 Xylanivirga thermophila strain SYSU GA17129 Scaffold71_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 34 30 100.0 36 .............................. TCTATATAAACACATCCATACTGGCCACCTAGAGCC 100 30 100.0 35 .............................. TTCCTACGGGATACAAATACAATCTTCCACCTTTT 165 30 100.0 36 .............................. TTTCTACAGTAGATAATACTTCTATATGTGTTGATA 231 30 100.0 36 .............................. CTGCGTCTAAGAACTCTTTTTTGTCATGGTGTCCTT 297 30 100.0 36 .............................. AAATTCCACCATAAGCAGTTAACCTCCTACAGGCCA 363 30 100.0 36 .............................. CTTTATAAAACTTTTAAAAATATACGGTATTTGGTT 429 30 100.0 37 .............................. TGATGAATATTACAACCCAGATACACCAGATAAATCG 496 30 100.0 37 .............................. CAGGTGATAAAGGAGACAAAGGAGATACTGGACCTAA 563 30 100.0 36 .............................. ATTACAAATTTATCTAATGCCCAATCCGCATCTTCC 629 30 100.0 36 .............................. TTGGTTTATTGTGTTGCCATATACTCCAATTTTCTT 695 30 100.0 36 .............................. CAAAACCACTATACAAGCTACTGAATGAGGCTTATC 761 30 100.0 36 .............................. AGGGTATTAGTGGAGTGGTAGACGGTCTATCAAAAA 827 30 100.0 36 .............................. ACGGCTACATTCTCATAAACGACGACGATTATATTT 893 30 100.0 36 .............................. GGCACTATAATAGCCACCAGTGATGGTAAAACGATA 959 30 100.0 36 .............................. AGCCAAGTCAAATACTGATTAAATAATGTTGTAGTA 1025 30 100.0 36 .............................. AACTTCAGTAGCAACTTGGATATTCCCAGAAATGAA 1091 30 100.0 37 .............................. TCCTTCCTAGCCTCGTTGTTTAGTCGGACCTGCAAGA 1158 30 100.0 38 .............................. GACTCTACTTTAAAGGCCTTGGATGTCGGCTGTGTAAA 1226 30 100.0 35 .............................. ATTGTTTACAAATGCATTATATACAGATACAGCAT 1291 30 100.0 36 .............................. TTGGTTAATATGCACTTCTTTTCTCCATACGGCTCT 1357 30 100.0 36 .............................. GCCTTCCAGCCTCTAGCATTCTTGCCAGTACAGAAG 1423 30 100.0 36 .............................. AAGAAGATATTAACAAAGAGTTTCCAAAGTACGCTG 1489 30 100.0 37 .............................. ATGAACTAATTGAGATGTTACTGGGCAAAAAAGCAGC 1556 30 100.0 36 .............................. TAGCTTCTGGTCTGGATCCGTCCGGCTACTGCTACC 1622 30 100.0 36 .............................. TCACTACTCCAGTCTGTTTTAGCTTCCTGCCATGCC 1688 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 100.0 37 GTGTAACCTATACATAGGATGTATTGAAAT # Left flank : AAGTAATGTGTTTATTTAGTGGAGTATTGTACTG # Right flank : TTCCATAATGTTAGTGTATAATTTTCATGGGCATCGGGCATTAAATTCCAAAAAGAGGAAGACCCCACTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTAACCTATACATAGGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //