Array 1 10980-8536 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPU010000013.1 Sphaerospermopsis sp. FACHB-1194 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 10979 37 100.0 41 ..................................... AAGCAAGGCGATGTGATTGGTAGAGTTGGTGACACTGGTAG 10901 37 100.0 36 ..................................... TGTAATTAATACTTAATCCCGTAATCCCTACCAACG 10828 37 100.0 34 ..................................... TTTTATTTTAAGTTGACGTGCGGGTGGTAAGGTT 10757 37 100.0 37 ..................................... TGATCAGCCTCCAAGCCTTGCGTAGTAGGGCTTTCAG 10683 37 100.0 34 ..................................... GTTGATCAGCCCTCCCAGATTATTAAACCCAGTA 10612 37 100.0 35 ..................................... TTGATCTTCACTGTCTCTAAAATTCAATACTGGTG 10540 37 100.0 34 ..................................... GCTTAACCTTTAATCCTTTTCTAAACATCTCAAA 10469 37 100.0 42 ..................................... GGGACTGGGACTGGGGTTGAGTTGCAACAGGCTGGGACTGGG 10390 37 100.0 40 ..................................... TTCATGGCTACTCATGAAAATATGTACACATACGTAAGGG 10313 37 100.0 34 ..................................... ACGCAAGCCTAGCGTACCTATACCAGTTCGCGGA 10242 37 100.0 34 ..................................... ACGTAAGGTAGAAAAGAAACATTTAACCATTGAA 10171 37 100.0 34 ..................................... TTATTACACTCTCTATCTCATCAAAATAAACATC 10100 37 100.0 36 ..................................... TCGATCAACTTCTAACTTGGCTAATACTCCACTCAC 10027 37 100.0 34 ..................................... ATTTTGTGGCGTGTGGTTACAGTCATTTTGGGAG 9956 37 100.0 40 ..................................... TTTAGTAGTGGAGAAATAATCAAAATTGCATTTATATCAA 9879 37 100.0 35 ..................................... AGCATTCGCCCAATTACTCCACACGGCTGTACTTG 9807 37 100.0 34 ..................................... CGTTGCCGTAGACAAAGAACATTTTGTCCTTGTT 9736 37 100.0 32 ..................................... CTAATGGTACATAGTTTGCACCGTCTAGAGAC 9667 37 100.0 31 ..................................... CAGATATTCCGCTGGATAACGAAGGATTAAA 9599 37 100.0 41 ..................................... ATCTATGGGAACGGCGGGTACTCGCTGCTCACCATAGTGAC 9521 37 100.0 32 ..................................... CTAACGGCATAAAAGTATCCTTTGCGGCTAAT 9452 37 100.0 34 ..................................... ACGGAGAAAGCGACATTGAAAATCGCCGGATTGA 9381 37 100.0 36 ..................................... TTCTGGGTTTAGGGGAACAGGTAAAACATCATTATC 9308 37 100.0 36 ..................................... CTGATGTTGCATCAATTCAAGCCGGAAAATTTGTTC 9235 37 100.0 36 ..................................... CCCAGACCGCTTTTGACGGCTATTATTGCGTTATTA 9162 37 100.0 42 ..................................... TGCTGGTCAACTCCCACAAAGTGAGCATCAATATATCCGCGA 9083 37 100.0 35 ..................................... AGCTACTACGGTTTTTGTCCACTCATCTGCTTTTG 9011 37 100.0 38 ..................................... CTTGCTGTTACTGACTCCCAAATAGTTGCGTCAAGTTC 8936 37 100.0 34 ..................................... CCTCTGATAGAGTAGTATCTGAAGCTTTAAGAAA 8865 37 100.0 33 ..................................... AATCTGCAATATTGGAACAGTCAAACCGCCCAG 8795 37 100.0 40 ..................................... AATTGGGATTAGTGCGATCGCCTTACTAGGTTTTTTCAAA 8718 37 100.0 37 ..................................... TCAGAACCAATTCACTATCTCTACTTTGAGAATTAGC 8644 37 97.3 35 ..........A.......................... AAAGGTTAGCTGTCTTGGTTTTGTCTTCGGCATAT 8572 37 97.3 0 ..........A.......................... | ========== ====== ====== ====== ===================================== ========================================== ================== 34 37 99.8 36 ATTGCAATTTCCAATACTCCCTATTAGGGATTGAAAC # Left flank : ACATCCGCTGCATCTGCTTCTGCTACTTCACAAATTACCTCACCCGTAGCGGGGTTAATGGTAGCAAATTTTTTCTTGCTGACACTTTCCACCCATTCATTATTTATTAGCAGTTGGGTAGGACCTATTTTCACCTGTGGTTGTGGTCTTGTTGCTGTAACCATCAGACCCTCCTAAAATTTTAAGGCTTTTTGTTAAATGCTATTAAATTGATTCCAGGAGTTACACAATTACGGCTAAATCTTTTATATATGTTTACATTTGCAGGTGTTTTGCGCGGATGGGTGGGTGTAAAAAATTGGTGCTGTAAAAAAATGGCTGTATCTCTTGATAGGCTTGACTTTGGGGTTATTCCGCTTTTCCACCCACCCGCGCACCTTACACAGACTGGGTTTGGGTGTTTTTTGCTCTTGACACGATTCCTGAAATGGACTATGATAGAGTCACTCGCGCAATCGAACCTTGAAAACTAAATATAGATAGGCTTTCAGGATGCCGCT # Right flank : ACAAAAAAATAAACCCCACGATAAACGCGGGGAATAAAAAAACACAGCTTGGATAATTGAGAAACCCTAGATAGAAATGCTAGGAACGCAGAATTAATTCCCGGATAAAAATACCATTAATACTATTCCCAGGATAATAGATCCGCCACCGAGTACAAATGACCAAAAACGATGATAACTATTGACAACAGTGCCATTTTCGCTTTCTAGTTTAATTAAATCCATCCAAGGCATTACCCTACGACGAAACCATCCGGCAGTTCTCACTGGTTCACCAATTAAGCTTTGTACTCGTTTCATGCCAAATAAGAAATTACCAATGGGTCCAAAACGAGAAGCATAACGTAAATACAACATGCCGCTAGAGTCTTGGAGTTTGAGGTCAGAACCAAATTGATAACCAGCATCACCACGACCAATTAATTCACCTTGTAACATGGCTGGTTTTCCCCGTAAAGGACTAGCATAGGGGTCTGACATCAAGGTGAGAATATCAGTGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCCAATACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 21116-23927 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPU010000020.1 Sphaerospermopsis sp. FACHB-1194 contig20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================== ================== 21116 23 100.0 48 ....................... AGAAATCAGTGAATCAACTATCACTAAATATAAAGTTTCTAATTACCT 21187 23 100.0 50 ....................... AACCTGAGAGGGAAAGAGAACACTTTAAGCTTCTTTGTTTCTAATTACCT 21260 23 100.0 52 ....................... CCCCCATAAAGTAGAAGGAGAGAAAGCAGCATTCTCAAGTTTCTAATTACCT 21335 23 100.0 47 ....................... CCCACATATTGCATTAAGTTTCTTGGACTAAGGGTTTCTAATTACCT 21405 23 100.0 48 ....................... TAAACACCACCAGAATCTTCGTTAATTAGAAAATGTTTCTAATTACCT 21476 23 100.0 58 ....................... GCTTCTGTTTGTATCACTCTAGAGCTATGTTGAGTTTAGCTGAAGTTTCTAATTACCT 21557 23 100.0 47 ....................... ATAGACAATAGTGAGTTTTTTACAGCTTCCTTGGTTTCTAATTACCT 21627 23 100.0 51 ....................... ATATCTTCTGGTCTTAGCAACCCTTGGATAGTAATTTGTTTCTAATTACCT 21701 23 100.0 54 ....................... GCCACTATGTCGCTATTTTGTGGCTTTAGAGGCTCATTTGGTTTCTAATTACCT 21778 23 100.0 50 ....................... TAGTTTTAGCCTTTCTTGCTGGATGTCGTCACGCTCGTTTCTAATTACCT 21851 23 100.0 50 ....................... CACACTCACCATCTGCACTACGACACCAGATTTATCGTTTCTAATTACCT 21924 23 100.0 54 ....................... ATAAATATCACCCTGTACAATTCCCCTAATTCCTAGTAGTGTTTCTAATTACCT 22001 23 100.0 51 ....................... CCCCACATCTGCATTACTTACCCCACATCTGGGGAGTGTTTCTAATTACCT 22075 23 100.0 49 ....................... ATTTCTCCGGTTTTGGGGGATTGTTCCGGGTAATCGTTTCTAATTACCT 22147 23 100.0 52 ....................... TTGCGATTTGTTCATTTTCGGGATGGGTATGTTCCCATGTTTCTAATTACCT 22222 23 100.0 49 ....................... TAGAGAATCTAGCTCGAATTGTTGAGACAGAAAATGTTTCTAATTACCT 22294 23 100.0 49 ....................... ACTATCATTGATATCGTAGAGTTTAATTGTGTATTGTTTCTAATTACCT 22366 23 100.0 53 ....................... CTGCTATATTCTCATCTGTGAGGGGGTCAGGAATACCGTGTTTCTAATTACCT 22442 23 100.0 49 ....................... ATTTCTCCTGCTCTGGATTGTTCGGGATAATCTTGGTTTCTAATTACCT 22514 23 100.0 53 ....................... CTGTATCTGGGGCTGGCTGTAATCCTTGTGGTACAAGGGGTTTCTAATTACCT 22590 23 100.0 49 ....................... CTCAGAAGTCGTTTTATAAAACCAGTCCTCCTCAAGTTTCTAATTACCT 22662 23 100.0 51 ....................... TTTCATGATTACCCTTCCTGTCCAAATACTTGAATTAGTTTCTAATTACCT 22736 23 100.0 50 ....................... CATCTTTCTCACCCGCCATATAAGTAGCAATAGCCAGTTTCTAATTACCT 22809 23 100.0 54 ....................... GTAGATGAGAATGAACAGCAAATTGTAGACATTATCAAAAGTTTCTAATTACCT 22886 23 100.0 53 ....................... CATTCTGGTTAAACAAAGACTCAACATACTGATACAGTTGTTTCTAATTACCT 22962 23 100.0 48 ....................... AAACTGCCCAATTCTATTAATCATTGCTTTTGGTGTTTCTAATTACCT 23033 23 100.0 50 ....................... ATCAAAAAATCCTTCAATAGTTTCAAACAAGTCATCGTTTCTAATTACCT 23106 23 100.0 49 ....................... CCGTAGTTTAGGTTGGATTGCAGGATTTGTTTAGCGTTTCTAATTACCT 23178 23 100.0 50 ....................... AAAACGTCTCCAGCATTTATACCAAGACTTTTTCCGGTTTCTAATTACCT 23251 23 100.0 48 ....................... TCACCACCTAACTCTTTAACCGCTGAACGGTAAAGTTTCTAATTACCT 23322 23 100.0 51 ....................... ATGACCTCTACATAACTTTCTGGTACACCATTTCTTTGTTTCTAATTACCT 23396 23 100.0 52 ....................... AGGTCTCCATCTGTGTAGCCCTCATCAGAGCTATACAGGTTTCTAATTACCT 23471 23 100.0 47 ....................... GCAAAAGGCAAAACCTACTGGCTACCTGCTCTGGTTTCTAATTACCT 23541 23 100.0 48 ....................... TTAACATTAGGTCTTACTTCCATTAAGAACTGGAGTTTCTAATTACCT 23612 23 100.0 48 ....................... TTTACTTATGTCCTTACCACGGTTGAATACGGTAGTTTCTAATTACCT 23683 23 100.0 49 ....................... ATGACAGATCCGCACCTTTAAGCCCTTATCAGGCTGTTTCTAATTACCT 23755 23 100.0 50 ....................... CCGTTAGCATCCAGCTTTTTAGTAGCTTTCCCTAGCGTTTCTAATTACCT 23828 23 100.0 54 ....................... TGGCTATAGTTTCCACTGATTGAATCCTAAAAGGTTTTAGGTTTCAAACTACCA 23905 23 82.6 0 .C...........A..A.A.... | ========== ====== ====== ====== ======================= ========================================================== ================== 39 23 99.6 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : TTGCTGGATGTAGCTGTTCTGGGCATGATTTTGAGGCTACATAATGTGATTTTCTGTATTATACTATGTTTTGGTCCCCTGGTGGGGATGGGGTGAGGAGTGGGGAGTCAGGAGTCAGGAGATCAAGGAGTCAGGAGATCAAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCGGGACTTGAATATAAAATAGAAAGAGTGCAGTAATTATTTGTAACAAAAAAACTCTTGACAAGTAGGTTGCTAAATTTTACTCTTAGATCAGGATAAATTTGGCAGACCTAGAGCGGGGTCAAAAACCCTGGGGGGTCCGCCAAATCGCCAGAACCTTGATAATTGAATAGTTCTAGCGTTTCATCAGTTTCAGTTGGCAGTTGACCCGAAGCCTGAAATGAGGTTTTTTGAGAGGTCCGCCAAATTCCCCCCTACAGTCTGCTCCCAGACTATGTTTCAGAGGGCGGGGTTTCTAATTACCT # Right flank : CGTTTAAATGAATCAAATTGAAACAGATATCAATACTGCTCGGTTAAGGATTTTCGTAGGTTGGGTTGAACAAAGTGAAACCTAACAAACCCTTGTCAATGTTGGGTTTCGTTCCTCAACCCAACCTACGCGATTTTATTTTTTTGTGCTTAACCGACAAGTATTGAAACAGATATTACAAAGATAATTAAAGCCCAAAGATTAAGTTTTTCAGAACTTTTTTAAATTTAAGGCTGCATAGCTATAAAGTAATAGAAGTAAATTAATTTAACCAGTAATTTACAAGATAAAAATCGAGCAATTACAACTTGTGTGCAGTAATTTAACTGGTAATTTTTTTGGTTCTACCGTACTTGTTATGCTAAATTACCAGTCTGAAAGAGGGAACTCTTAACAGGGAACTCTTAACAGGGTAAAGAGGCAATTTTTGTAAAAATATCCAATATTTGTAACTTATGTCTTATGTATATTAAGCCTTCCGCAGTTTTTTGAGATTGATT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37698-40303 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPU010000011.1 Sphaerospermopsis sp. FACHB-1194 contig11, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================================================================================================== ================== 37698 36 100.0 38 .................................... AACTCTTTTCTTTAGAGTTGTACAGCTCTATCAACTTT 37772 36 100.0 41 .................................... TGCACTCTCCTCACGTTCAATTGCCACTCTCTCCTCACCTG 37849 36 100.0 38 .................................... ACCAATAAGACTTTTATGGATATGAGTAACGTACATTT 37923 36 100.0 44 .................................... TCATTCATTAGGTTTAGAGCCTCATACCTCGACTGAGGATTTAA 38003 36 100.0 39 .................................... TGTGTTAGTAGTGACAGATTTAGGACGGCTAAAATCTAA 38078 36 100.0 41 .................................... AACAGAGGAGAACTTTTGAAGCTCAGTGAGGTCTCCATCTG 38155 36 100.0 40 .................................... AACTAAGACGTTTATTTTCACAGAACAACACAGCTATTTC 38231 36 100.0 37 .................................... TTGGGCTAGGTTATTGCTAGAGGATTCAGACTTTAGT 38304 36 100.0 48 .................................... ACGAAGCTTTCGCTCCTGTTTGTTAAGCTTTGGTAGCTTCACCTCCGC 38388 36 100.0 39 .................................... ACCTGAGCAGGTAAGGAAATACGTTCTTCTATTTGTTGT 38463 36 100.0 39 .................................... AAGGAGACAAGGTGCGGAGAGCTAGGGAAGAGTATTCTT 38538 36 100.0 38 .................................... TTTAACCAAGCCTCTTGCAGTGGCAGGGGTGCCACCGC 38612 36 100.0 36 .................................... TGTGAAGCTTTGGGTGTGGAAATTCAGCCCGGCTTA 38684 36 100.0 44 .................................... TGTATCACTACCTAAAGGAGTGGGTAGAAACCACTCCTGAGCCC 38764 36 100.0 39 .................................... TCCTAAAGAGATGTTGAGTACATCCTCTATAGAAACTGA 38839 36 100.0 39 .................................... AAGCCTTCACAAAAGCTTATATAGTTGATTAATTCTTGT 38914 36 100.0 72 .................................... GAGCTGGAGCAGGGGCTGGAGCAGGGGCTGGAGCAGGCTGGCATTGAACCAGGGATGCAAGCCTACCCGCAA 39022 36 100.0 34 .................................... AACATAGTGGCGCGTGATCAGCATCCTTGTGTAA 39092 36 100.0 39 .................................... GTCAGGTGAACTACTTTTATAAATCCGTTCAATCATGTC 39167 36 100.0 39 .................................... TTTTGGGTAACTCTTACTGGTACACCAACAACAAGCTCT 39242 36 100.0 40 .................................... TTAGCAAGATTTGCTTTGTTAATAGACTCTTGAATTTCTT 39318 36 100.0 38 .................................... AGCTACGTGGTCGCCTAAGTCGTGCCGTAGGGGCACTC 39392 36 100.0 47 .................................... CAAGCTAGTAGCAAAAAATTACTAGCACTCATATCAGAGATGGGGAC 39475 36 100.0 43 .................................... TTGGAGGTTTTCTTGCTCCTCTTGTTTTAGAGCAGCAATTCTC 39554 36 100.0 39 .................................... GTATTTTCTACTTGAGAATATTTCCTGAAGACCATGAAA 39629 36 100.0 36 .................................... GTTCTTCCTGCTCAAGATCAGCAATGCGCTGCTCAA 39701 36 100.0 41 .................................... TTGAGGAACTCCTGCTTCAATAGCTAAGTTTAGCAAAGACA 39778 36 100.0 38 .................................... GTTATATTTACAGATTAAAGTTGGCGCGGCAAGACGCA 39852 36 100.0 38 .................................... TGTCCTTAGTGGTTTACTAACAGTCAATACCTATGAAG 39926 36 100.0 164 .................................... TAGTAATTAAGAGCGTTAAGAAGGTCGCTCCTTCTGTGTCTATGAGAAACAAAATTGCTAAAGCTTCCCGCAAGGCTCAACATCGCTTGGCAGCAGCTAAACGCCGCCGTCGGCAAGCAAAAAATGGCCGGGTTTGCAGCCCAGCCTACCAAGCTCTCTGCAGA 40126 36 100.0 35 .................................... TGAATTACGAGAGAATCTTTCGGCTCAAATGTGCC 40197 36 100.0 35 .................................... ACCCCAGCCATCCACGCTGGAAGATCAGGACGCGC 40268 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================================================================================================================================== ================== 33 36 100.0 44 ACCGCTTCCTTAACAAGAAGTGGAATTAATGGAAAC # Left flank : TGCTATCATATTTTTGATGTGAGTTGGTTGTAAAAAAACCACAATTTTATCAGATGCTGTAGCATTTATAAAACTAGCCAAGGTAACTAATAATGTATTGACAATAACTGCTGCTAATCCTAATGGGGCAATTAATAGGATTATAAGTGTAATTGACCCATTAAATATAGCGACTCCTAAATTTCTGACTAAAGCCGCACGATGAGAAATGTACATATTTTTTGTGAGTTGATGATTTTTTTAAAATAGACCTAATTGCCAGGTAATGTAAGGGGGTTTCATGCGAATAAGGAATTTTTTTGTTAGTAATGGTTTTTTTGCGGCCGGGTAGGGGAGGGGGTGCAAATGTTGATTCTTTCGTTGACCCTGCCGATCCCTTGCTGGGTAAGGGTTTCAGGTGTTTTAACATCATGGTTTATGGTGCTGGTTGACTCTTTTTTTAGACCCGGCCGAAAATTGCCTCTAGACAGTAGGCAGGGTAAGGGTTTATAATGGTGGCT # Right flank : CCCACTATCAGATCCCGGACTTCTTTGAGAAGTCCGGGATCTACTGCTTAAATGAAGATTTTCCTCATTCGCATGAGAAGCATTGAATCACGAGAAAATTGCGAGTATGTTGTTACAGGAGATGTAAACAAAACTACCGCCAGGGTGAAGGAATATCTGTTATGGGAGAAAATAATGACAATAAAAAACTGTTGCGTCAATCTTTAGATGCAATTAATGAACAAGAAGAACGGAAAAAAGCAGATAAAATTGTGCGGCTTTCTCGTTTAAATATAACCATTGCAGTTTTATTATCTTTATTGATTCCCCTTGCTGGATATTGTTACACACGACGTTGGAAAGCACTGTTGTGGCTGGGTTTGAGTCTTGGTGTAACAGGTGCAATAATTGGATTATCTTCCTCTACAGAAGAAGAAGCAATGGAAAGAGGTTTTGCTATTGGTTCTATTGCTAGTTTAATTGCGCCTATTGATAATGGTTTAGCTATTTCCCGTGCTAAA # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCGCTTCCTTAACAAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.10,-2.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 93454-93028 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPU010000011.1 Sphaerospermopsis sp. FACHB-1194 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 93453 37 100.0 47 ..................................... CTCAGTGGAGATAAATTCTTTTGCTCTGTCTAGATCATCGTCTTCAT 93369 37 100.0 43 ..................................... TGTAGCGTTCCGTCGTGCTTACCACCCTTGCGAGAGTACATAT 93289 37 100.0 36 ..................................... TAGGCTGTAACCCGAAGCTGGTGATACCCAACAAAG 93216 37 100.0 35 ..................................... GTTTAGCTCTCTTTTTTCTATCTCTTCCACGTCCA 93144 37 100.0 43 ..................................... GACTAGAAGCGTTAATCAAATTCAGTGGTAGTGCGCCTCTTGC 93064 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 6 37 100.0 41 GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAAC # Left flank : GACAAGTGATTTTCTAAGAATTTCACCTGCTGTTTATCAACTTCTTTGTGATCCCAATACTCAGGTATTTTTAAGCGTTGTCAGTATTTGGGAAATGCAAATTAAGTTATCCTTGGGTAAGATTCAATTTAAGTCAGCATTACCTCAAATTATTGAGGATGAAATCAAGCAAAATAAAATTCAGTTATTACCTCATTTTTTGATTTTTTTCCCCTTGAAAGAGGAGGTTTTAAACCTTGAATGAAACAATTGTCAATTATCAATTGTCAATTATCAATTGATAAAGATTTACATTTAGTAATCTTTGGTAATTTTCAAAAAATGTTGGTTTTTTGGGTTGACATCTGGAAGTTTTTGTTTTATTCTGTATTTATTGGCTGGAAACAGCAATCTGTACCTTAAAAATTAAATACTGACTTCGCTTGTTACATTGTTGTTTCCGTAGCTTGGCGCAAACGCCCCTTGAAAGCTATTTGTAACAAGGTCTCCATGAGTGTAGG # Right flank : AAAACTTGGGGATAAAAAAAGATAGAATTACTAAAAAATGCGATCGCTTGGTTGTAATAAATTAGGACTTACGCAAGATGTGACTGAAAACCTTATTCTTGCGTAAGGGTAATTCATGAATTACCCCTACTTTCGTTCCCTGTTGCGTAAGTCCTGCGTAATTTAATCAGCTTTTGCAGTGCCAATACAAAAAATTGAACTTGCCAAAATAGACAATAAACAATAGACATCTCCAGGAAAGAAATTCTGGAACTTATTTATGGGGGCAAGGCGAAGCTTATGGGATATCTAGATGTCTGATTTTTTCGATAAATTATCGCCCTGTAAGAGCGAAGCATTCGGAAAATATCCTTTGGTGAATACCGATCATTAATCGCTCGAATGCTTCGCCCCTACTTCGCCCCTACAACTTATGACAAATTAATACATTCTATTGTGGAGATGTCTAATAAACAATGTACAATTGAAAATTATACTTACTGCAATTGGTTTTTTTGTCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 200831-202629 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPU010000003.1 Sphaerospermopsis sp. FACHB-1194 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 200831 37 100.0 34 ..................................... AAATCTATTGTGGCGCTATCTGCTGAATAGATGT 200902 37 100.0 33 ..................................... GGTAGATTTAGCTCAGTAGATAGCTGATCTCTC 200972 37 100.0 34 ..................................... AGCTAAATTAATCTTATCTGCCAGCCCTTGCCAG 201043 37 100.0 45 ..................................... GTAACAGGTTGGGACTGGGGTTGAGGTAAAGGCTCGGACCGTGTG 201125 37 100.0 34 ..................................... ATCATGTGACCCGCATCCTTCAGTGATGCTTTTA 201196 37 100.0 34 ..................................... CACATATCCTTAGCAGGTCATCACGTAGGGATAT 201267 37 100.0 35 ..................................... ATTGATGGAATATATCAATACTGTGCCGCTTAGAA 201339 37 100.0 34 ..................................... AATCCTCCCAACTGGAACGGTTGGGACGACGGGA 201410 37 100.0 41 ..................................... ATTTATCCCCTTAATATAAGGATCTGAAGGCTTGACCGGAT 201488 37 100.0 36 ..................................... TTTCAGCTAGTGCTGATAAATTTACTTTACCATAAA 201561 37 100.0 33 ..................................... CCAAGTCGGGTCTGGAACTGCAAAGTTAAAGTT 201631 37 100.0 34 ..................................... GATCAATAGCAACCAAACCGGATAATAGGATTAA 201702 37 100.0 38 ..................................... CCTTGTATTGCGATCGCCCCAAACTAACCCCTTAAGTT 201777 37 100.0 40 ..................................... CTGCTTTCCTTAGCAGCCCAAATTCTTAAATATTGTTTAG 201854 37 100.0 35 ..................................... GCCTGTCTTCCCATTCTTTTTAATATTAAGAGAAC 201926 37 100.0 37 ..................................... AATTGAACCCGCTAATAAGTTTGGTGATATTGTTAGC 202000 37 100.0 34 ..................................... TATATCCTTCACAAAGCAATCAGAATCATAGTTT 202071 37 100.0 41 ..................................... TTCTACCAGTGAGAACCATTAACGCAATAGCCACTTCTTGG 202149 37 100.0 34 ..................................... GATTCATCAGGAACAAAATCAAAAACACTCAAAA 202220 37 100.0 47 ..................................... TAAAGCTTCGCAGACTTGCCATTCTGTTTCTGTCACAGCGTGACCAG 202304 37 100.0 37 ..................................... ACTGAAACTAGCTTGAACTGAGTCGTAAAACTGTTTA 202378 37 100.0 34 ..................................... CCCTTCATGAGCAATTATATCTGCTGTTGCTAGG 202449 37 100.0 33 ..................................... CATTTATCCCCTGACTAGCGCAGAAATCGGCAA 202519 37 100.0 38 ..................................... TGGAGATAGTACCCAAAATCAATCTATAAAATTGCAAA 202594 36 70.3 0 ..........G.......TGTG..G.-A...AC..T. | ========== ====== ====== ====== ===================================== =============================================== ================== 25 37 98.8 36 GTTGCAACATTAAATAATCCCTATTAGGGATTGAAAC # Left flank : TCAATGGTTGCCTTGGATGAAGATGGGTGAACAACCAGGACAACTTATATATAGTGCTATTGGTGGTAAGGTGGGCGGTTTTACAGAGTTACCCCCACTGTTACAAGCGGAAATTAATAACCGTTTGCCTTTGTATAAGCAAGCGCCGAATGCTTTTATGGAAGGGGAAGATATGACTTCTTGGTTATATTTTCAGAAGCATTTTTCTGATTATTTGGCTGGGGAAGTTTTTCCTTTACCAGCAGCGGAGGAAGGTTAGTTTGTAGCCCGAAATGCGCGGATGGGTGGGTGTAAATTTTGAGGTGTTGAAAAAAATGCCTGGATCTCTCTCTCTGCAAGGATTGGGAGTTATTTGTGTAGAACAACCACCCGCGCACCTTACCCTGTCTTGGTTTCAACGTTTTTCCCTCTTGACGCAATTCCTGAAATGGACTATCATTAGAACATCCGCGCAACCGAATCTTGAAAATTACATATATCTAGGCTTCCAGGATGCCGCT # Right flank : CAAGCAACTCCATAGTCTGTATATTCCCGCATTTCAGGAGCTTGAAAACCTAAAATAATATCTTCCTTTGCAACTCCTCGCGCTACAAGTTCTTCAGCCACCATCATTTCCGTCATATTTTGCTCAATCCAGATTTTTCCCTCTTTAATATCCAAATGTAAAACACAACCATAGACACGCCGATGGCCATCCCATCCAACATTCATGACTTGGTAATGATCTTGTTTAGTATCAAAAACAGTGTAACAATCAATCTTACCATTGGCTATTGGGATGGCAGCATAAGCAGTCAACAACGACTGAATGATATTGCGATAAGATGCTATGGTATCCATTGTAAAATTACCTCTTCAATTGGGTCATAAATAATTTGTTTAATCTGATATCTCTCTATTGAAATTTGGGCAAATTCCCGCTTAAAAAAAGATTCATAAACACCTATTGGTACTGCCAAATAGAGAATACGAGTTGGATCACTGATTTCTAAAGCAAGTCGATAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACATTAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 6449-7019 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPU010000024.1 Sphaerospermopsis sp. FACHB-1194 contig24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 6449 36 100.0 46 .................................... TTCTTGAAGCTACGTATACTTGGTAAGCTTCGTTTGATGTTATACC 6531 36 100.0 41 .................................... GGAATCTTACTTCCATCCTTGTTGATTGCGGGGTTCATTAG 6608 36 100.0 44 .................................... ATTATTTTTAAATTCCTATGATTTTATTAATTTCTCTTACTTGA 6688 36 100.0 42 .................................... TTGTCTAATCTCACAAAACGGATAACCGTTTTTAGGTCTAAT 6766 36 100.0 37 .................................... TTTTTAATACTCTTGTTAGCTTTGCTCCATTCGGCAA 6839 36 100.0 36 .................................... TCTCTTAAATTGTAGTCAAGAATACTTACATACTGT 6911 36 100.0 37 .................................... TTTATCGAAAAGCAGGATATCTAGAAAACACGCAGAA 6984 36 75.0 0 ..................T.....C.AC..AACC.A | ========== ====== ====== ====== ==================================== ============================================== ================== 8 36 96.9 41 GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : TTGCTGATGTTTATGTTATGTTTTTGTATGTGATTGCTTACGATATTCCTGATGATAAACGACGGAAAAAGATAGCTGATGTATTGGAAGGATATGGACAGCGTGTACAGTATTCTGTGTTTGAATGTCAGTTAAATACAGAGAAGTACAATGATTTACGTCGTCGGTTAAGGAAGATTGTTAAGTTAGAGGAGGATAATGTTAGGTTTTATCCTTTGTCTCGACATACTCTTTCCCAGGTGGAAGCGTGGGGAGTGGGGATACCAGTGATTGAAACGCCGAGTTCGATTATTGTCTAGTTGTTAGGGAGGCGCGGCGTTAGCCGAAGGTCAGGTAAAATGGCTGAGATGTTGATTATTCCGTTGCGAGCTTCGGTTGCTTGCTGGGTAAGGGTTATGGGGATTTTTGAACGCTGTGGGAAGGCAATCTGTCCACCTTTTTTCGTGACCTTCGGAAACCGCCTCTGGACTCCTTGCACTGTCTGGGTTTAAAATGGAGGG # Right flank : ATTACCGTAGGGGTTTAGCACTGCTGAACCCCTACTTAGGGGTTGCTGAGAAAGTCTTTCCGTGAGGGCATAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGAAGATTTGAAAATTTCTTTGCCATCTCTTGAAATCCCAAAAAATGCACACTTTTTCCGGTATACCCTTCAAAACCCTTGCACTAATTTCTGTGTTTATCAGCCTCTAACCTTTGATATATCAAGGTTTTAGGTTTATTCAGCAAACCCTACTTAATAACATTTGAGTATCAACAAATCGGCATAAAAATACACAATTTGCAATTAATGTCAAAAAATAAACAATATTTTTAATTAAACTAAATAAACACCTCAAAGCCTTATACACAAAGGATTTCAAGGTGATTTATATTGAAAATTAAATATTGTCAATCAATAGACAAATACTAAATCCCGTCATTACAATATAAATATTGGCTACACAGGGGAATCACCGATGACAGCAGAATATTGGCGGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 29331-29874 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPU010000024.1 Sphaerospermopsis sp. FACHB-1194 contig24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 29331 36 94.4 36 G..........................A........ TTCAGAGTGTAAAGTCCCCAAGGGGGGAGAAAACAC 29403 36 100.0 36 .................................... CCGAACCCGATATTGGTGTTCTTGATTTGAACCCCA 29475 36 100.0 38 .................................... CTCAGTGGCAAGATGGATTATTCGATTTGAGTTTTTTA 29549 36 100.0 34 .................................... CTCGCCTGTGCCGTGATTGTCAAGCGCGTGGATG 29619 36 100.0 39 .................................... CAGCCATAGGCTTCGATTGTTGTCACCAAATAGGCGACA 29694 36 97.2 38 .............T...................... TTATGTCAACTCCGTAGCCTGCGATCCGGCAGGAGTTT 29768 36 97.2 35 .............T...................... CTTATATATTCCTTGAAGAACCTCAAAGATATTAC 29839 36 94.4 0 ..................T................G | ========== ====== ====== ====== ==================================== ======================================= ================== 8 36 97.9 37 CTTTCCAAATCAACTTCCCCGCAAGGGGATGGAAAC # Left flank : ACTCGTTGGGCTACTGCTATTATCATAAAATAATCCCCCAATTCCTGTAAATACCAGGTTGTTTGGGGGTTAACTACAAGTTTAAAATGTTGCAGCAAAAAGTGAATTTAAGCTTAGTGAACACCTAAAAGGTTAATGTTGTGCAAACATAAGATTAAGTTTAGGTAAATTTTCATAATTGATAATTGACAGTTGACAATTGATAATTTTTTTATTCAAGGTTTAAAACTTACCCAAGCAGTAATAATTAAACGCAGATGGACGCAGATAAACGCAGATAATTTTGTACTTCTTGAGATTAGGAAATGTTATATCAGGATGAATAGTGGGATTTTTTGGTGTTTAAGCAGCTAATGTTTAAGAAATTATAACTAAAGGTTGAAAATCTAGGTTAGATAGGTTACATTAATGGAAGTGGTAAAAATATTTCGACACCACAAGCCCGAACCTTGAAAACCGCATAACTTCGTTGAATTGTGTCGATTGTTTACAGGATCAGC # Right flank : GAAAAAATCTAAATAATAATGGATATTAATTTACAAAAAGAAGAATTTAGCTATGCTTACATTTATGCTATTACCACAGCAGCAGGATATTCCTTTCAAAAATCATCAAGAATTTTAGATGTAGGCGGAATTGATGCCACAATTACAGGTACAGTAACAGACGATACCCTGTATGAACCACAACTAGATTTACAGGTAAAATCTACCTCACTAGATATCCTCAGTGGAGAAACTATTCGCTATCCTTTAAAAATCAAAAACTACAACGAACTCAGAAAAGAAAGAACTGTTGCACCACGAATATTAGTAGTTGTTCTCATCCCTGAAAATCTGCAAGAATGGATTAAACAGTCAGAAACAGAACTGTGTTTACGTCGCTGTGCTTACTGGGTTTCATTACGTGGACAACCCCAAACACAAAACACCGAAACCGTTACTGTTTATATACCCCGCAAAAATGTATTTACAGTTGATGCTTTAAAAAATTTAATGCAAACAAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAATCAACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : CTTTCCAAATCAATTTCCCCGCAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 19606-18983 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPU010000031.1 Sphaerospermopsis sp. FACHB-1194 contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 19605 37 100.0 39 ..................................... TCCATCAAGTCCTTGACCAATAACAAGCAGGACAAGCGA 19529 37 100.0 34 ..................................... GGTGATTGTGGCAGGGGAAATGATGGTAGTAGAT 19458 37 100.0 40 ..................................... GAATTTTAATGCGCCCCCGAAAAAGATGGACTCAGCAAGA 19381 37 100.0 34 ..................................... CGCAAGACGGAATACAGCAAATTCACCGAGCGCG 19310 37 100.0 38 ..................................... TCTTAGTGCTTTGATGTTTTCTGGTGTTGCACTTTGAA 19235 37 100.0 36 ..................................... AGATTGGCGGAGCTTTGTGGTTGCCACTCCGTAACA 19162 37 100.0 34 ..................................... GTATTTGGCATTGTCTCCAGTGGGTTACTCCTGA 19091 37 100.0 35 ..................................... GGGATTATGCCCAGATATGGCAACACTGCCAACTA 19019 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 100.0 36 ATTGCAATTTCCATTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAGCGGCGGACTAAAATTCACAATATCCTCAAGTCTTATGGCCAATGGGTACAGTATAGTATTTTTGAATGTGAATTGACTGATACTCAGTATGCCAAACTGCGATCGCGTCTCCATAAGCTGATCAAGGCTGATACTGACAGCATCCGTTTCTATTTCCTTTGTGCTTGCTGTCACGGTAAGATAGAAAGAATCGGTGGTGAGCAACCCCGCGATCACACTGTTTTCTTTGCTTGATGCGCGGATGGGTGGGTGTAAAAATTTTAGGTGAACAAAAAATGGCTGAAATTATCTCTATACAAGGCTTTCATGATTTTTATCCAACTCACCCACCCGCGCACTTTACACAGCAAGAGTTTCAGCCATTTTACCCCTTGACACAATTTCTGAAATCGACTATTATTATCTCATTCGCGCAATTGAACCTTGAAAACTACATATATATAGGCTTTCAGCCGCCCGCT # Right flank : ATTAAAAACATAAAAATATTGTAAGGGTTTAGCAAAGCTAAACCCCTACCCCCTGAATAATCAAACTCTAAAAACTGTCACCTGTCACCTGTCACCTGTCACCTGTCACCTGTCACCTCAAAAATCCCATTTCCTGTAAACCCTGACGCAACCTTTTAGCCTCTTGCGGATTATCTTTTTCATGGAGAGCGATCGCATATTCAAAAGCTGCCAAACTATTCTTCACATCACCCACTCTCAACAACACCACCCCTAAATTTTGATAAGCTTCCGCATAATCAGGATTTAAAAAAACCGCATGATTATAAGCATCAATCGCCTCAACAAACAAACCCATTGCTTTAAACACCATCCCCAAATTATAATACCCAATCACAAAACGATCATCAATTTTCAAAGCAGTTTCATAAGCATTTTTCGCCCCTGGCAAATCTCCCATCGCTTTCAACAAATTACCCAAATTATTATATCCTCCCAATTTCAACAAAGGATAAATAGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCCATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 48074-47891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPU010000038.1 Sphaerospermopsis sp. FACHB-1194 contig38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 48073 36 100.0 38 .................................... TCCCGGGATCAACTGCGCCAGGTTGTGGTCACAACCAC 47999 36 100.0 37 .................................... GCTCTCTTTGCTTTGGTGGCAATAAGAATCAAATCCA 47926 36 97.2 0 ....C............................... | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 99.1 38 CTTTACAAATCAACTTCCCCGCAAGGGGATGGAAAC # Left flank : CTTCGCCAAAATCAAAAATATCTTGATTTGTAGGTTGGGTTGAGGAACGAAACCCAACAAATACGTTGAGTTTACAGCAGTTTTCATGTATTTGTACCACATCCTTCTTGTTATCTTCCTTTCTTCCTTTGCGCCTTTGCGTCTTTGCGTGAGATTAAAAAATGTGGTTCATTTACCTGAAAATCGCTGTAAGTTGGGTTTCACTTCGTTCAACCCAACCTACGGGAAAATGGCAAAGGTATTGTCATCTGTCAAAAACTTGACATTTATGGCGATGTGTTGTATATATGAAAAGTGTATCAAGAACATCGACACACATCTTCCGAACCTTGAAAACCTAATAAATTCGTTGACCTGTGTCGATTGCTTTTGTAGCAAGGCTTTTGACTCTTGAATGAGTCAGTTTTTTCTCAACAAGCACTGATTTTTTCTCAATAAAAAAAGGTGTGTAGATTGGGGTATCTGAAACCCTTGGTCAGTAAAGTTTCTAGAAGTAAACT # Right flank : AATTATTTACCAAAACCTAAACCAAAGCTTTGAGTAATGCTTGAAGTTTAAGCTGCACTTCAGCAAATTCTTTTTCAGGATCAGAACCGGCGACAATACCAGCACCTGCATAAAGTCTAGCGCGATCGCCATCAATTAAAGCTGAACGAATACCGACAATAAACTCACAATTTCCCTTTGCATCTACCCATCCCAAAGGTGCAGCATATAAACCCCTTTCAAATTTTTCATAACAGCGAATTTCTGCACAAGCAATATCTCTATCTGCACCGGCAACTGCTGGTGTAGGATGTAATTGGGCAACGATTTTTAAAGGGTGGACGTTAGCAGGTACTACCGCAGTAATGGGTGTCCATAAATGTTGAATATTAGATAATTGTCGCAGACGAGGGGCTAAAATTTGCGGAAATAAACCGAGTTGTGATAACCGTTGGGTGATAAAATCAATTACTAGGTTGTGTTCGTGTTTTTCTTTGGTACTATTAACTAAGTTGTTGGCA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAATCAACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 43845-47253 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPU010000005.1 Sphaerospermopsis sp. FACHB-1194 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================== ================== 43845 23 100.0 49 ....................... CTGCTATCTCTTTTTCTGTCATTATGAGATCCTCTGTTTCTAATTACCT 43917 23 100.0 52 ....................... ACGACTAAATTAATGGATGAATCGGGAAGCGATCGCATGTTTCTAATTACCT 43992 23 100.0 53 ....................... ATGTTAGTAGCTGCTTTAGGACAGCACTATACCCAGTTAGTTTCTAATTACCT 44068 23 100.0 51 ....................... TTTATATTGGCTACAAAAATTACTTGGGAGAATCTATGTTTCTAATTACCT 44142 23 100.0 51 ....................... TATTAGATACAGGTGGTACTCCATTCGCCACAGAAGCGTTTCTAATTACCT 44216 23 100.0 49 ....................... ACTCCCTCTACTTCCATTTTTTTTGACTTGCTCATGTTTCTAATTACCT 44288 23 100.0 56 ....................... ATAATGTTGAACTTAGGAAAAAAGCTTATATCACCTAGCTTGGTTTCTAATTACCT 44367 23 100.0 50 ....................... CACACTCACCATCTGCACTACGACACCAGATTTATCGTTTCTAATTACCT 44440 23 100.0 52 ....................... ACCATTTTATTTGTCTCCTGAAAATTTGTTTCCTGAAAGTTTCTAATTACCT 44515 23 100.0 53 ....................... TTACCCATCGTTGCAACTGCCTTGATCTATAAATCCAAAGTTTCTAATTACCT 44591 23 100.0 49 ....................... TTGATTCTTGATTGGGATATCTACATTTTCAGAATGTTTCTAATTACCT 44663 23 100.0 51 ....................... TTGACTGAGTTGATCGCGGCTTCGCAGGAAACCATAGGTTTCTAATTACCT 44737 23 100.0 51 ....................... GAATTAACGTAGGGTCAGCTTATCTAATTTGTTACGAGTTTCTAATTACCT 44811 23 100.0 49 ....................... GACACCAAAAAAGAAACTTTACCTAGCTTTTTAATGTTTCTAATTACCT 44883 23 100.0 50 ....................... AACAATATAGTCATTAATTTGGAAAAAAAATGAAGAGTTTCTAATTACCT 44956 23 100.0 53 ....................... AAACGGATCGCACTTCCCCCTATTGGGGAATACTACTCGGTTTCTAATTACCT 45032 23 100.0 48 ....................... CTGCGTCAGACATGGCATTAGATAAAAAGATTAGGTTTCTAATTACCT 45103 23 100.0 50 ....................... TTTTGTTATTCTGGAAATGCGCTAAGAAATGGATTAGTTTCTAATTACCT 45176 23 100.0 49 ....................... TTTTTATTATTTGCTTAAATAGTTAGTTTGTATATGTTTCTAATTACCT 45248 23 100.0 47 ....................... CATATCCTACTAATTAGTAGGGTTTTGTGAATAGTTTCTAATTACCT 45318 23 100.0 53 ....................... ACAAATTATGTTCACAGTTACGCCCTGTTGAGTTAACAAGTTTCTAATTACCT 45394 23 100.0 49 ....................... TATCAGGGAGATATCCCGGAAGAAGATGAGGATGAGTTTCTAATTACCT 45466 23 100.0 50 ....................... TTAATTTGGTAGGAACTATGAAAAAATTACGATCTCGTTTCTAATTACCT 45539 23 100.0 49 ....................... TCAAATTTTAGGACATACATTTTAAATCAATCCTAGTTTCTAATTACCT 45611 23 100.0 54 ....................... ACAATAAAGGAAGATTGACAATCGATATCCATACCATAAAGTTTCTAATTACCT 45688 23 100.0 48 ....................... ATAAAAATACCGCTGGCTGGCTGGTCAGAGATAAGTTTCTAATTACCT 45759 23 100.0 48 ....................... CCTCGGAAGTATGTACCTTAAAGTGGAGCGACTTGTTTCTAATTACCT 45830 23 100.0 49 ....................... CCTTGATTAAAATGATCGCACTAGGCGAACTCACTGTTTCTAATTACCT 45902 23 100.0 55 ....................... AAAAAGAGCGTGACCTTAAACTTGCAGAACGGTTTAAGCGAGTTTCTAATTACCT 45980 23 100.0 52 ....................... CATCTATTTTCCTTGTTTATGTTCCAGGTTTATGTTAGGTTTCTAATTACCT 46055 23 100.0 50 ....................... AAGATTGAAGTATCGGGGGTTAAGTTTTCTTAGATTGTTTCTAATTACCT 46128 23 100.0 55 ....................... TTTTAGTCTACCAACTTCTTGAAAAGAATAACCTACTTAGTGTTTCTAATTACCT 46206 23 100.0 52 ....................... CCCCATTTATTAACTATTAATATATATGACCATCTATAGTTTCTAATTACCT 46281 23 100.0 50 ....................... ATAAATGATTTACCTTACCTTAATAGCTATGATTACGTTTCTAATTACCT 46354 23 100.0 50 ....................... TACTCTCCGTAAGGCTCAAAGTAGCCTACATGATCTGTTTCTAATTACCT 46427 23 100.0 49 ....................... TAGAAAGCATCAAGGTCAATGCTTGGAATGTTGCCGTTTCTAATTACCT 46499 23 100.0 52 ....................... TAGTTAGCAGGAACTTTCACAAATTCCCTATCAGTGCCGTTTCTAATTACCT 46574 23 100.0 48 ....................... CAAACATACTATTAAATTAACGCCGTTAGGGTGTGTTTCTAATTACCT 46645 23 100.0 49 ....................... GATTCTTCCATCATGATTTTTTGCTCCTCAATTTTGTTTCTAATTACCT 46717 23 100.0 49 ....................... AATTGACTCCGGCTTTCTCGAAGTCAATCATTTTTGTTTCTAATTACCT 46789 23 100.0 50 ....................... TAAAATAAAACGCGATTTTAGACCATCGAACAATAGGTTTCTAATTACCT 46862 23 100.0 49 ....................... TCACCCACTTTATACCCCAGTTATACCCCAGTTTAGTTTCTAATTACCT 46934 23 100.0 50 ....................... TTGGATGGATAGAATCAAATCCAAACCCACGACATTGTTTCTAATTACCT 47007 23 100.0 49 ....................... AAGACCCTACGAAGTTTGGCTAGTTTTTCTTCATCGTTTCTAATTACCT 47079 23 100.0 54 ....................... CCTTTAATAGATTTAATCATGGTTTTTGTAACTTTACCTAGTTTCTAATTACCT 47156 23 100.0 52 ....................... TTCCCAACAAAAATCACCAATTCTATAATCGTCGTAGTGTTTCTAATTACCT 47231 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ======================================================== ================== 47 23 100.0 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : TCATAATTTACGACTTACCAGATAGCAAAGCTGCTAACAAACGCAGGACAAGATTACATAAAATGTTGGGTGGTTACGGAAAATGGACTCAATATAGTGTGTTTGAATGTTTTTTGACTGCGGTGCAGTTTGCGACACTGCAAACCAAGATAGAACGATTGATTAAATCTGAAGAGGATTCGATTAGAATTTATGTACTAGATGCTGGGAGTGTGAAAAAAACTATCACTTATGGTTCGGAAACCCCTAGACAAGAGCAAGCGATAATCATATAATTGATATATCAGCTTGAATTTTTGGCAAACCTAGAGCGGGGTCAAAAACCCTGGGGGGTCCGCCAAATCGCCAGAACCTTGATAATTGAATAGTTCCAGCGTTTCATCAGTTTCAGTTGGCGGTTAACCCGAAGCCTGAAATGAGGTTTTTTCAGAGGTCCGCCAAATTCCCCCCTACAGTCTGCTCCCAGACTATGTTTCAGAGGGCGGGGTTTCTAATTACCT # Right flank : CATCATTTTTAATCTCCTTGTGTTTGTTTTCCGTCTTGTTTCCAAGACTAGGGCAAACTAGTTTAGAATGGATAGAACCAACATCCAATATATCAACAGAAATTACAACTAATTTATTACCAGAACATATAAAACACAGGAGGCGATCGCACGGAAAAAATAGCTACAACTTGGGCAACAATATTAGCAAGAAGGGAAATGGGAGAATCATTACAAATCATAGCTCAAGATTTAGAAATACCATACACCACAGTTAAAACTTATGTTAAATTAGCACCACGGGCGCTGAAAGATAACCAGAGCAATATTTAACATGATTATGTATTTGGTGAAATTAGTGATCGCTTTTTCCAATATGTGAATTATATTAAATTAGCGATCGCCAAAAAAGATTAAATATTAAATATTAAATATTAAATATTAAATATTAAATTTAATCTTGTTTATTTTGAGGAGTAAATTAATAGTGAAAGCAAAAATCAGAGATACAGAAATCTATT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 13563-12362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPU010000056.1 Sphaerospermopsis sp. FACHB-1194 contig56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 13562 37 100.0 48 ..................................... CATCCCGCTCCTCTGGGTTGTTCTCAGCTCTACGATTTGCTAAGTCAT 13477 37 100.0 38 ..................................... TTTTAACTCGTTTTCTCCCGGCTTCTAATGCGTCAAAA 13402 37 100.0 46 ..................................... TTCTCACACTAACATCTAGGGTTCCCACTCTCTGAGAAGGAGGAAC 13319 37 100.0 45 ..................................... CAACAGGTGGTACTCCAGAAGTTGATACCGGTGGCAGCACCTTTC 13237 37 100.0 38 ..................................... TTTGTCGCCAACCATAACCTGATACGCTTTCATAATTC 13162 37 100.0 42 ..................................... TCAGTTGACTGAAAGTGGTAGTTAGCTTTCTAGCTAACTCCT 13083 37 100.0 37 ..................................... AAGGCTGTATACCATGTTCCGCTATTAAATCATCTAG 13009 37 100.0 35 ..................................... CCCATGAAGACGTTATTATAAGCATCAAAATCCCC 12937 37 100.0 46 ..................................... GCGAAACTGTTTTTAAACTGAAACTTTGTGATAGTCTAGCTTCAGT 12854 37 100.0 44 ..................................... AAGAGCGGAAGCAATTAAGCTTCCTTCTGTTGAACTAACCAGTC 12773 37 100.0 39 ..................................... ACCTAACATAGCTCTGACATCAAACTTGAATATAGAGTT 12697 37 100.0 37 ..................................... TTTGTATGCCTTGATGTAATCTGGGTCTATTTCCATT 12623 37 100.0 37 ..................................... TTTTTTGGGGGTCGCCAATCTGTGAACATCAACGCGC 12549 37 100.0 37 ..................................... CACTCATAGCATCCCTCGCGACTGAATAATCCCATCA 12475 37 100.0 40 ..................................... GCCAAACCCCACCCTGCGGCGATCATCCAGTTTGATTGAT 12398 36 94.6 0 ..........-...A...................... | C [12384] ========== ====== ====== ====== ===================================== ================================================ ================== 16 37 99.7 41 GTTTTTCATAACCTTTTCCCCGCAAGGGGATGGAAAC # Left flank : CCTGGGACAAAAATTGATAATTGGTCGTCCGAATGCTGATGCTTCCAGCACACTTCGCGAACGCCCGTACAGGAGTCAGGAGTCAGTGGTTTGACTTTGCTTTTCCCTTCTGCCTCCTGCTTTGTCATAACGACAATTTTTCACACCCACTTGGTTAACTTTTGTAAATTTGAGAACTGGGGAAAATACAGCATTTTAACTACCAATATCCTTAATATTTCGTTGTTTGCGGGATTGTAACGGAATGTTAAGAACTTTGATAAGTTTGGCGCAAGCAGCTATAAAGATTTACATTTAGTAATGTTCTGTGATTTTAAGAAAATGTTAGTTTTTTGGGTTGACATCTGGGAGTTTTTCGGTTAAATTATTTTTATTGGCTGGAAACAGCAATCTGTACCAATAAAATTGAATACTGACTTTGCTTGTTACATCTTTGTTTCCGTAGCTTGGCGCAAATGCCCTTTGAAAGCTAAATGTAACAAGGTTTCCGTGAGTATAGG # Right flank : ATTTAATAAGCTTTTTAAATATGAAATGTGCCAAAAAAGTTTTGCACCCTCATTTTCGCAATAAACCCTAGCCATTCTCAAGATTATTGCTATAAATTCTCAACTATTTAACGAGTTTTGGTTTTTTCAGCGATTGATATTGACATACACTTTTTTTCTGGTATGATATATTTATAATCCCAAGGGGTGTATATAGTCTGTAAAAACTTGAGCAAATTTCTGTTTTGAGAATTGACAATTACCTCTGGATCATTCGTGAGAAGATGGGAAAACAAGAAATTTGTTCTTCTTGTCGCCGGTAAAGGGGATATTTGCAACATTGAATTAAACAATTGTCAATTATCAATTGTCAATTATCAATTGTTTTAAACTATTTACTAACTTATTAATATGCTCTTTTTCATGGGTTGCCATAATTGTCACCCTAATACGACTTGTTGGTACTGTGGGAGGACGGATAGCAGGAGCAAAAATACCCGCTTCCTTTAGCTTCTTACCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCTTTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 142979-142578 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPU010000007.1 Sphaerospermopsis sp. FACHB-1194 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 142978 35 88.6 38 ....C....C.A..................A.... CGGAAAGTAACTCTAGTCGATCTCCGTTCCTGCCTTCA 142905 35 100.0 40 ................................... CGCCTTGGCGGCAATGTCAGGGGCCACCTCGACCTCGGGG 142830 35 100.0 37 ................................... CACAACAACAGCAGCGGAAAAAACAAACCTAGCTAAT 142758 35 100.0 39 ................................... CGCCCAGATAGCAGCACCGTTTGCGGTTGCATAGCACGA 142684 35 91.4 37 ....C....C...C..................... ACTCTCCGCTGATCTCACTGGGTAGTTTTTGGAGATC 142612 35 85.7 0 ....C.C..C.A.A..................... | ========== ====== ====== ====== =================================== ======================================== ================== 6 35 94.3 38 CTTTACAAAATCATTTCCCCGCAAGGGGATGGAAA # Left flank : AGACTTAGCTGCTGGTGAAGTTGCTCCTGTTGCTTTGACTGCTCCTGCAATCAACGGTTAATCTGAAACTGGGTTTAATAAGCTTAGTTAAATAAGAAAATACCCTCCAGAAATGGGGGGTATTTTTGTTTGTTTTTTAGTAGCAGGTTCACTGTTAATTGTCCATTATGGAACAGCTTGACATTTTCAGTGAAATCATCTACATTAATGTAATGTCTTCAAATTTATCGACACACCCCGCCCGAACCTTGAAAACCGCATAACTTCGTTCAGGTGTGTGGATGGCTTGCACCATAAGGATTTCAGGCTGCAATTTTCGCCATTTCTTGAAGTTTTTTTTCCATTTTTAAGAGGTGTGTGGATCAGGGTATCTGAAACCCTTGCTCTGTAAGGTTTCCAGAAGTGAAC # Right flank : TAGCCTATTTTGCTATACTCTAATTGCTGATCAGCGACTTTCAGATAAAAAAATATACAATTAATTCTTGTGGGTAGGCATACTTCGACACGCTCAGTACAGGTCTTGCCTGTCCTTAAACCCGGATGGGCTAGAACGTCGATTTAGTAATGCTAGGTAATCTGTTTTTACCTTGTAGGGGCGAAGCATTCGGACAGAATATGAACTGGTTTCACCGATAGGTTATCACCCGAATGCTTCGCCCTTACGATTAATGAATCGGTGTTCTAGAAGCCCATCCCACAATATTAGACCTCTCCGAAAAAGATGTAGGAACAATTGATGAATTGTCCCTACGAATGGGTTTCAAGTTACGCTTATGTAATTTTCGGAGATGTCTATTGGATAATCTATTTCTTGGAAGTCCCTAAAACCGCGTTTTTCATCCTGTTAATCCTTTAATCCTGGACATCCTGATTCAGACAGTTTCTCCAAAACTCCCCAAAAATGTCATGATAGAA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAAATCATTTCCCCGCAAGGGGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 28861-27833 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPU010000009.1 Sphaerospermopsis sp. FACHB-1194 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================================================================= ================== 28860 36 100.0 45 .................................... TGTTGAGTTAGCCGATATCTCCAATAATGGCGAACAAAATTACAT 28779 36 100.0 38 .................................... GAAATAATTATTGATGGATTGTACCAATACAGTGCTGC 28705 36 100.0 34 .................................... TACTGAGCGCCCCATACAAACAGACCATCAAAAA 28635 36 100.0 125 .................................... CTACCAGAGCCCCTTGAGACAAGGGCAACTTCAAACCGCCTTGGCAGTAAGAAGTCAGCGCACAGCTATCTTGCGATAACCGCGTACTCTTGTAGGGTAGACCTAAAGCCTTCCACTAACAGAAA 28474 36 100.0 35 .................................... ACAACGCGAAGGGAGGAAAAGTGCAAAACGTACCC 28403 36 100.0 48 .................................... TGTCAGGAAGAGGAGGCAAGAAACCTAATCAGGTCTTACTCCTACAAA 28319 36 100.0 38 .................................... ACTTCCCTCTACAAAAGTGATTAAGCTGTTCGCTTATG 28245 36 100.0 41 .................................... TCTATGTAGTGTGTAGCTACGAACTCATCAATTACTTCTGC 28168 36 100.0 50 .................................... TAGAAAAACTCCTCTCAAACAGAGAGGCAAAAGTCTTAGATGCTTTTGTC 28082 36 100.0 35 .................................... GTTGAGAGTGTAGAGTATAAAATACGGAAAGGTAA 28011 36 100.0 35 .................................... GGCTCTGGGATACCGGAGTAAGTCAGCCTTGATAG 27940 36 100.0 36 .................................... TAACTAAGATGACTACTACACTTTCTTTTCAAATCC 27868 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================================================================================= ================== 13 36 100.0 47 GTTTCCATTCAATTAATATCCCCAGCGAGTGGGGAC # Left flank : CTTTTATTAGATGATGTTTTAGCAGAATTAGATTTATCCCGTCAAAATCAATTACTTGATGCTATTCAAGATCGGTTTCAGACTTTAATTACTACTACTCATTTGGGTGCTTTTGACTCTCAATGGTTAAAATCTTCACAAGTTCTCTTTGTCAAATCAGGAGAAATAGAGTTTCCTGAAAAAGTCTTTTCGTGAGGGAGTTAGGAGTTCCAGAAATTTTTTTATTTTGAAATTGTCTAAATAGGGGTTGCTGAGAAAGTCTTTCCGTGAGGGCATAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGGAGATTGGAAAATTTCTTTGCCATCTCTTGAAATCCCAAAAAATGCACACTTTTTCCGGTATACCCTTCAAAACCCTTGCACTAATTTCTGTGTTTATCAGCCTCTAACCTTTGATATATCAAGGTTTTAGGTTTATTCAGCAAACCCTAAATATCAACAAGGTGCAAGCTTTTTTAGCTTTAC # Right flank : CCCTCCATTTTAAACCCTTACCCAGTAAAGTGTCCAGAGGCAGTTTCCGAAGGTCAGGAAAAAAAGTGGTGAAACAACTAACCAACAGCGGTAAAAAATCCCTGAAACCGTTACCCAGTAAGCGACCGAAGTTCGCAACGAAAAAATCAATATTTCAGCCATTTTACCTGACCTTCGGAAAAACTACACAATAATCAAGGAGTCAGAAGTTCCAGGAGTTCCTCACTGACTACTTCAAACCTTTGATTTATCAAGGTTTTAGTTTTATTCAGCAACCCCTATTGAGCTAAAAACTGTATTATATCTTACTTGAATTAGTAATGTAATTGTAAAAACTCAATTTTTAATAATATTTATTTATTTATATAAGATATTTATATTTATTGCTTTGAAATAGTGTATTAAAGAAATAATCAAAAATGTAGCGTTTGTATCTTACCATAAAAACAGTAGGTCGATAATTGACAAATAATACGTAAAACTTGCACAAATGACACCTA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.71, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATATCCCCAGCGAGTGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 113068-112658 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPU010000009.1 Sphaerospermopsis sp. FACHB-1194 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 113067 37 100.0 39 ..................................... TCACTTTCGCTGCAAAAGTCCTTTTAACAATATCCGGTT 112991 37 100.0 35 ..................................... GACAGACTAGATGCCTCCACAAATTCCAGACTACA 112919 37 100.0 35 ..................................... GCACAAAACCCAAATATTATTAGTTAACGCTTGCT 112847 37 100.0 43 ..................................... ATGCTCTGGGGCATCTTCTTTATCTTCCAGTAAGCTGCATATA 112767 37 100.0 36 ..................................... CCCCTTATTTTCTGACTCCAGAACAGCAAAAAGTAG 112694 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 6 37 100.0 38 GTGACAATTACTAATTAAGGTAATTGAGGATTGAAAC # Left flank : CTGGTTGTGTGAATGAACGGGATTTAGCTTTATTTTGGCAAGCTTTGATTAATGCTTGGGAGTTTGATCGTTCTTCAGCACGGGGTTTTATGGCTTGTCGTGGTTTGTATGTTTTTACTCATGCCAGTAAATATGGTAATGCTCCCGTTCATGAGTTATTTGATAAACTGCAAATTAAGTCTAATGTTGATGTACCCCGCAGTTTTGCTGATTATCAGGTTGACTTGGATGAGGTGTTACCTGATGGTGTGACTTTGACAAAGTTGGTTTGAAAATGCGCGGATGGGTGGGTGTTAAGTCGGAGTGATTATGACTAAGCTGGAAACTCTTGCACTGTCTAGTTTTTATCCGTTGGGTGTTGTCAACCACCCGCGCACCTTACGCTGTAAGGGTTTCGGCGTTTTTCGCTCTTGTGCTATTCTCTGGGATCGGGTATTATTTTGGCATCCGCGCAAATCGTTGTGGAAATGTCCTATTTCTAAGGGTTTGCGCGATCGGCA # Right flank : ATTAAGGATTGAAACTAAACTAAAAGATAATGATTTTCACAACAAGAAATTACACAGTAATTGCAGATTGACATGACAAAAACCCATACCACTCATCTAAACCCACACCAGTAGTAGCAGAAACCTGAAAAATTTGTATTTTTGGGTTTACCTGTTTTGCATATTCAATACATTTTTCTACATCAAACTGCAAATAGGGTAACAAATCAATTTTTGTAATAATCATAATGTCACTAGCGCGGAAAATATGAGGGTATTTAATTGGTTTATCCTCTCCTTCCGTCACCGACAAAATTACAACCTTAGCCTGTTCACCTAAATCAAATAAAGCCGGACAAACTAAATTACCCACATTTTCAATCATCACCACAGAATTTAATGGGGGGTTAAGTTCCTGTAAACCCTTTTCTATCATCGAAGCATCTAAATGACAGCCTGTTCCGGTGTTAATTTGCACCACTTTACAGCCTGTAGATTTAATTCTTTCTGCATCATTAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACTAATTAAGGTAATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //