Array 1 606878-604773 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSTL01000001.1 Pseudomonas aeruginosa strain LiA131_2005 IPC775_1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 606877 29 100.0 32 ............................. CTCGAACAGATGCTTGAAGAGGAAGCCGCTGC 606816 29 100.0 32 ............................. TTTCGTCGTGCGACTCATACACTGGCGCCTCC 606755 29 100.0 33 ............................. GTAGGTGGTCAGCGCCTGCGTGGTCGTCTGGTT 606693 29 100.0 32 ............................. ACTTGCCTTGATGACCTCGCGCTTTTCCTGCT 606632 29 100.0 32 ............................. TCGTAGTCTACGATGAAGCGCGGGTCGGTTTC 606571 29 100.0 32 ............................. TTGAACAGCAAGGACGCTGTACTCAAGCCCGC 606510 29 100.0 32 ............................. TTGATGGTGCGGTAGGCTGCTTTGCCCTCCTC 606449 29 100.0 32 ............................. CACGTTTCGGTCGGCTATCGCGTCCTGCGCGC 606388 29 100.0 32 ............................. TGTTGGAACCCGCTAGCGCGGGCGAGCAGGCG 606327 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 606266 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 606205 29 100.0 32 ............................. GCGTTTCCACGCAGGCAGATGCTCGCCACCAC 606144 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 606083 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 606022 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 605961 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 605900 29 96.6 32 .................T........... CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 605839 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 605778 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 605717 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 605656 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 605595 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 605533 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 605472 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 605411 29 100.0 32 ............................. GTGTAGCGGAACCGGGCGGCGCCGCCGGCGAG 605350 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 605289 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 605228 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 605167 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 605106 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 605045 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 604984 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 604923 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 604862 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 604801 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 616934-616050 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSTL01000001.1 Pseudomonas aeruginosa strain LiA131_2005 IPC775_1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 616933 29 100.0 32 ............................. CGTGCAGTCGGTAAGAATCATCGCGCTGCCGC 616872 29 100.0 33 ............................. CTTCTATCCGAAACCCAGGTCACGCCAGACAAC 616810 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 616749 29 100.0 32 ............................. TCGTAGCCCTCCGGGAGGGATTCGAACTTGTA 616688 29 100.0 32 ............................. CCTCCGACGTGGAGGTTGAGGCGGATGGCTAC 616627 29 100.0 32 ............................. TGGAACTTCAGGTCCTTGTTGGTCAGGCGCTT 616566 29 100.0 32 ............................. CTCCCGTGAGCACTCAGGGCATCCAGTCGGCT 616505 29 100.0 32 ............................. AAAGCCATCGGGGCACGCATCGTTGCGCCAGC 616444 29 100.0 32 ............................. GCGATCTGAGCACCTGCGGATGCGTAGATGTA 616383 29 100.0 32 ............................. TAGGTGTGCTGGGCGTAGTCGGTGGAGTTCTG 616322 29 100.0 32 ............................. GCCGTGTCGTTCGATGGTGATGTCGTGCTGCT 616261 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 616200 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 616139 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 616078 28 79.3 0 A..........A..C.....-..A....T | C [616069] ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.9 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTTGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGCCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //