Array 1 144257-145676 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYTV01000004.1 Bordetella pseudohinzii strain 2789STDY5608636, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 144257 36 100.0 30 .................................... ATGTTTATCGTGATCACGATTTTGTCGTGG 144323 36 100.0 29 .................................... GCGGTGGTTCTGCGCCGATTAACATTAAT 144388 36 100.0 30 .................................... AGTGATCTTCTTCGTAACATAACGCGCTAC 144454 36 100.0 30 .................................... ACTAGCGTTGTAGTTATGTTGCGTGATTGC 144520 36 100.0 30 .................................... CGCATCGACGGACCGCAGATCAGATCATCG 144586 36 100.0 30 .................................... AAGTCGAAGTACAGCATGTTGAGGGACTAG 144652 36 100.0 29 .................................... GTATGCCGTATTCGATGCGCCCCCAGCAG 144717 36 100.0 30 .................................... TCTTTCACGTCCTTTCCTTGAGAGAGTCCA 144783 36 100.0 30 .................................... GGTCGTCACGCCTTCCCGACCGCCGCTGTC 144849 36 100.0 30 .................................... AGTGGCGTTTCAGCTGTCATTCCCGTACCT 144915 36 100.0 30 .................................... ATCAGTCGCATGAAGCTGCCGCCGTACTGA 144981 36 100.0 30 .................................... GGGTGAGGGCGTAGAGGGGAATGTTCATGG 145047 36 100.0 30 .................................... ACGTGTTACGACGCGATTTCGCTTCCAATA 145113 36 100.0 30 .................................... TGGAACAAGAAGTGATCGCACCGCCGGAAG 145179 36 100.0 30 .................................... TATTTGGATTGGTGCAAGTTCTATCTGGAA 145245 36 100.0 30 .................................... TTGCCCGTCATGGACGTGACGGCGCCGTCG 145311 36 100.0 30 .................................... ATCCATCCGAATTCACTACGGGCCAAGCTG 145377 36 100.0 30 .................................... ATAGCGATGCAGGGACGGCGCGCGTTGACT 145443 36 97.2 30 ......................A............. GGCCGCTCCAGTACCACTCGTGACGAAACT 145509 36 100.0 30 .................................... TCAGATGCACTGCTACATCCGCCAGTCCGA 145575 36 100.0 30 .................................... CCTACGCGGGTTCGACTCCCGCAGCCCGCT 145641 36 91.7 0 ..............................T.A..A | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.5 30 ATTCTAGATCACTGGGAATTGCGCTCTAGCCGGAAC # Left flank : CGTTGGCCCAGGTCTACCTGGGAGAACGAAAAGACCTCGAACTGCCTCTGCCCGGCCTGCCAACTTCTCTGGCCAATAGCCTGAACGGCGACTGATTTTCGACATGCTTTCGGGATATCGACTAATGTGGATGCTGGTGATGTTCGACCTGCCCGTCCTTGAAAAAGCCGAACGCAAAGCCGCCTCGGCTTTTCGCAATACCCTGCTGGATCTAGGGTTCGAGATGAGCCAGTTCAGTGTTTACCTGCGGTTCTGCACCAGCCAGGCCCAGCTTGACACTTTGTGCAAATCGGTCGAACAATGCCTTCCGGAAGGCGGCAAGGTCCACGTACTCCAATTCACGGATAAACAGTACGAGCGCACGATCACCTATCAAGGAAAATCGCGCCAACCCTCGAAAAAAGCCCCGGATCAGTTCGATCTTTTCTGACAATGAGCACTCTTTTTTTACTCAGAGAATTGAATAACCCCCTGATAAATCAGGGGGTTATGGGAACAAC # Right flank : AAAATTGGCAGACTACCCCACACGGCAGAACGTGAACCTCTTAACGCTCCATTAATCCAAGTCCTGGATCCTTGATTGTCATTGTGAGCGCAGGCGGAGTGGATGGGGTTGGATTACCGGTGTTTGTCAGTGTTTCCGGGCGTGTGTCCGTCCTGGGCGGCAAGCCATGCATAGCGTCGGCCCATTTTCCGTCCAGGTGATCGCCGTGGCGCTTGCCGCCGTCCTGGCCTGGCTGGCCGCGCGGCTGCTGTGGCGCAAGGACGGCACGGGCAAGCGCGCCGCCGCCGTGCTGCTCGACGCCCTGCTCATCGGCCTGCTGGCCGCCCGTGCGCTCTATGTGCTGCGCTGGTGGCCGGATTACAGCGCCGCGCCGCGGGCCATCGTGTCCGTCGGCGATGGCGGTTTTTATTGGTGGGCCGGTCTGCCGGCCGGCCTGGCTTATCTGGCCTGGCGCACGCGCGGGCTGCCGCCGCTGCGGCAAGCCGCGCTGGGCAGCGCGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGATCACTGGGAATTGCGCTCTAGCCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //