Array 1 2-238 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACSK03000012.1 Arthrospira platensis str. Paraca isolate UASWS Contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 2 38 100.0 40 ...................................... GTTTCTCCGCGACGGTGAAAGAGGGGGGGAACTGCCACTC 80 38 100.0 9 ...................................... TTTGCGAAT Deletion [127] 127 38 100.0 36 ...................................... CGCGGTACTCTTTGGCAAGGGTTCGAAGGTCGGCCT 201 38 97.4 0 .....................................A | ========== ====== ====== ====== ====================================== ======================================== ================== 4 38 99.3 29 GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAACT # Left flank : AG # Right flank : T # Questionable array : NO Score: 4.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.94, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 199-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACSK03000001.1 Arthrospira platensis str. Paraca isolate UASWS Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================== ======================================== ================== 198 40 97.5 36 G....................................... CGCAGAATACCATTTTTTAAAAGATAGGTATTATCT 122 40 100.0 40 ........................................ TTGTCGCGTCAATCGACACGGTTTTGTAATATTCCTTCTA 42 40 100.0 0 ........................................ | ========== ====== ====== ====== ======================================== ======================================== ================== 3 40 99.2 38 TGTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAACTT # Left flank : A # Right flank : TCT # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAACTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.70,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 3236-3621 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACSK03000131.1 Arthrospira platensis str. Paraca isolate UASWS Contig131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 3236 35 100.0 36 ................................... CTTTGTCATGGAAAGCGTGGGAAGCCGCCAATGCTT 3307 35 100.0 34 ................................... CTGGAGGGAGTTCATCTCTCCGGGCTTTGAAAAC 3376 35 100.0 35 ................................... GTCTCTACCCATGTTGGGGACGTTACCGTTCGCGA 3446 35 100.0 34 ................................... CTACAAATGTGTATGTGCATCCCGACCAGGAATG 3515 35 100.0 37 ................................... AGGAGTGCCTAATATTTTGGCACATACCTCTCGTCAA 3587 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 6 35 100.0 35 GTTGCCATACGTTCGACTTTCAAAGAAGTCTCAAG # Left flank : ATGTTTTTGATGGTAGCTTTCAGATTCGTTTAACTCTCCCAGGGCATCGTAAATATTCCCCAAGCCGTTGTAACAAACGGCATCACAGCCCGGATTCAATTTTCCGAGGAGAGATTTATAGAGTTTTTCTTGTTGGTCATAATAACCCCAAACTCCCAATTGGTCGTGTAATTCTTGGTTGCTTTGGGGGTCAGGAATCACTGTCAAAATTTGGGTCGCCCGCCGCCAATCTTCTACCTCCCATAGGTGATAAAAAGACTCCAGGTAATGCTGCACCCGTTGCAGGGGGGTGGCTTCTTGGGGGGGGATGCTTTGATGACACAAAAAATATTCGACGGCAGTATAAGTAGCTAACTGCTCGATGGGAACTGTATTGATATCGATATCAAGTTCATCCCACAGCATTGGATGTCTCCTTTTGGGTATCCCATTGGCTCTGAAACAGTTTAGCACTACTTCCGTTCAAAAAGCGATCGCTTTTTGACATTTACAAAAAAGTA # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCATACGTTCGACTTTCAAAGAAGTCTCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 3-247 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACSK03000015.1 Arthrospira platensis str. Paraca isolate UASWS Contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 3 36 100.0 34 .................................... ATGCGGTCAGACGTTAAATCGTCCTCCCACTGCA 73 36 100.0 35 .................................... TTTCAGCTTGCGTTAGTCCAGAGGGGGAAGTTTCC 144 36 97.2 32 T................................... CTCTCTACCCATGTTGGGGACGTTACCGTTCA 212 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 4 36 99.3 34 AGTTGCCATACGTTCGACTTTCAAAGAAGTCTCAAG # Left flank : CGA # Right flank : G # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGCCATACGTTCGACTTTCAAAGAAGTCTCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 4-459 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACSK03000201.1 Arthrospira platensis str. Paraca isolate UASWS Contig201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 4 35 100.0 34 ................................... AAGGAGGGCCAGCTGGGATGACTTCTCCGTAGAA 73 35 100.0 38 ................................... ACTCTCTCTTTGGGACTTCTTGTCCTTGCCATCGTAAC 146 35 100.0 34 ................................... AAGTATTTCCATCTGGGATGACTACTCCGTAGAA 215 35 100.0 35 ................................... AATTGGGGAAACCCCCCAACATGCAGGTGTCGTCC 285 35 100.0 34 ................................... TTGTATTTCCATCTGGGATGACTACTCCGTAGAA 354 35 100.0 36 ................................... GAGTTGCCTTCGAAAGGTTGCTTGGAGTTGCCCAAG 425 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 7 35 100.0 35 GTTGCCATACGTTCGACTTTCAAAGAAGTCTCAAG # Left flank : GTTG # Right flank : GAGCATAAGAACGAAATCCTTGCTCTGAAGGGATTCTAACCCACCAATTCTATAGGGGTCAAGTCAGTACCCCAATTATTGACATAGATTAGCAATAATTGAGTTAACAAAATGACTGAAACCCGGTCGTAGCAGTCCACCTATAGGGGTCAACGAAAAAATCAGTGATTGGGCGGTTTGCCAGACCCCTGTAGGTGAATGGATGTTACAGGTCAGACCTGGGGCATCATTTGGAAAAAGCTAAATTTTCCACAACATCGGTCGATAGGTCTCCCGTTCTCCCATCAGACAGGAGATGTACTCCCACACCTGTAATTCCAGACAGCGATAGTAGCTGACCTTGTGACCTGTATGGGGATGGGTGGTGGAGAGGGATAGCTTGTCCTGCCAGTGCTTGAGATACTTTTTCAGAGCATCCGAATGTAGGTAAACTGATTCATTTAAGCTGAACAGTCCTGAACATTAATTGACAATGCTCGGACTGTAACTATAGCAATACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCATACGTTCGACTTTCAAAGAAGTCTCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 53748-52618 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACSK03000230.1 Arthrospira platensis str. Paraca isolate UASWS Contig230, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 53747 37 100.0 44 ..................................... TCGACATCGGTATCTAAATGCCCATCAAACACTCTGCCTATCAA 53666 37 100.0 41 ..................................... TTCCCGAAAATGATGCTGAAACGCTTCTGGCGTTTGCCAGG 53588 37 100.0 46 ..................................... GCGCGTAACGTCTTAGCACCGAAGAGCCCATCGATTTTACCCGGCG 53505 37 100.0 41 ..................................... TCTATCTTCCGTTTGTCTTCTACATACTCCCACCCCACCCA 53427 37 100.0 35 ..................................... TAAAAAGCGTGTTGTGGCTGCATCACAGGGAACCA 53355 37 100.0 40 ..................................... TCCAAAATAGAGAGGCCGCTCTCTCTTGGTTGGAAAATAT 53278 37 100.0 42 ..................................... GTTTCGCTTTTTTTGGGGCTTGCGTTTTTGCTTTGGTTTGGT 53199 37 100.0 40 ..................................... CACATACCCCGAGGGGCGTAGATTTGCCACGACAGACCTA 53122 37 100.0 44 ..................................... TACTGTTAATTCTAATTTTTCTTTTAAAAAGCTTACTATACTGT 53041 37 100.0 36 ..................................... TTTTATATAGATTAAAGGAGGTTTATGCCATTTTCA 52968 37 100.0 41 ..................................... TTTGAAGCCCATTTTATTTTCCTCAAATTACAACAATAAAA 52890 37 100.0 42 ..................................... ATTTTCTAAATCCTGAACCCAGTATGTTCCGCCTCCTACGGG 52811 37 100.0 45 ..................................... ATAATATTATTTGATGACCAGGGTACGTCTCAGGTCGTTAGGGGA 52729 37 89.2 38 .................AAG.A............... GGCTAGGGAATGCCGATCGCATTTTGTGATTTTCCAAA 52654 37 83.8 0 ...AT................AA.......G.....G | ========== ====== ====== ====== ===================================== ============================================== ================== 15 37 98.2 41 GTCCAACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : TTAG # Right flank : GCGAGAAAACCGAGTCTTAAAAAGCCCCCAGGGTGAAGTCTTGTTAATGAGGGGGTAGGGTAGGGAAACAGTGTCAGTAGAAGATATTTCCCATCAATTAACCTTCCACTTCTCCATGGGTTTGGTGGGGGGAATTTCCTAACTTCACCTGCTTACCAATGAGACTTAAAAAAGTCGAGCCAAAATGCTGAATTTCCAAAAAGTTCGCATAAGCCGGGGCGGGTTTATAAATCCTAAAACTCTTCATAATTCCTAGAGTTGCCGCGCTTTCCAGGGGACCCACAAAACTGCTATCTCGGTCTAAAAAATAAGGTTGTTTGACCCAATGTTCCATCTGGTTATTGTTGAGAAAATAACAGCCAGCGTGGGGGTTTAAACTGCGATTAAATTGAATGGGTTGCTCCATCACCTTACCCACCAATTGGGGGCGATCGCGTATATTTTGAAACTTCGCCGTCACATGGGGTAATAAATCCCCATCAACATAGGCTTTATTAATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 3-270 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACSK03000024.1 Arthrospira platensis str. Paraca isolate UASWS Contig24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3 37 100.0 43 ..................................... ATGATGAGCCACCTCCCACCACACAGGGAGAAGATAGTCGACC 83 37 100.0 39 ..................................... GACCGAGGTCCTCGAGACCTGTGCCCCCTTAATAACGTG 159 37 100.0 38 ..................................... TTCCTACTATTGCAGGGGGAGTTGATGTATCCTCCACC 234 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 4 37 100.0 40 GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : AGG # Right flank : CGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 12007-12406 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACSK03000249.1 Arthrospira platensis str. Paraca isolate UASWS Contig249, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 12007 35 97.1 40 ....T.............................. GCTTATGTACAAGCATCGGCTAATTATAGTCCGTGCTTTG 12082 35 100.0 37 ................................... CCATTGTCGATTCCGACAAAAAACCTTGTTCTTATGA 12154 35 100.0 35 ................................... TAGAAAAGGTCGGCGATCCGACCAAAAAATACTGC 12224 35 97.1 37 ..................G................ GCTGGTCAATCGTCTGTCAATACCAGCGGTAATGTTG 12296 35 100.0 41 ................................... CTTGAACAATTACTGCTTGTTCAGAAGCGCAAATCATACCA 12372 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 6 35 99.0 38 GTTTCCATACGTTTAACTTTCAAAGAAGTTTAAAG # Left flank : AATCGGTGCAAAATCTTTGGGTTAAGACTCTTTTGGAAGCTTATTGCAAAGACCTTGAAATAGGTGCAATTGGGTATGCTGATGGGGTTGAGACGGTCTTACTAAACACCCCAGCGACACAGTGGGAGAGTATTTTAACAACCTTGAAAGGGCTGAACCAATCACTTTGGGGCAGACAGAAAATTAAACAGTTATTGGAGCGACGGGAGAAACTTAAACAATCTCCTCTGGAGGAACAGGATTTTGATGAAATTTTTCGAGACTATCAAGAAAAAATAGAAAAGTATATTGCCCAACGCAATCGCCGCTCCTATTGAAAAGCGATTGAATTTTTACAAAACCTGAAATCCATTTGCGATCGCACAGGTCAGCAGTCTCTTTGGGATTGTTATATTGAAGTTTTGCGATCGCGTTATGCCAATCTCAAAACTCTATGGCTTGAAATTGATGCTTCAGATTTACAGTTAAAATAAATCATTTTCATTGATTTCAGTCAACTC # Right flank : GAGTGCCGAGTTGAAACCCTTGCTCTGACTGTACTCTAGCACTCAAATTTGTGGGGGTCAAGCAAACACCCAAATTATTGAGACATATTTGCAATAAGACCCCAGAAAAAATGGCTCAAACCTTTACTCTGACTGAGCTTTGTGTGGGTCAACGAAATCATCAGGGTTTCAGCGATTCTTCAACCCCCACAATGATATTTACCTTACATCTTTGTTAGCATGGGCCGATAGACTTCCCGCTCTCCCATCAGGCAAGAAATATACTCCCAAACCTGCAACTCCAAACACCGATAATAACTAACCTTGTAACCCGTATGGGGATGAGTGGTTTTCAAAGAAAGCTTATCGTGCCAATGCTTCAGATATTTCTTGAGAGCATCGGAATAAATATAAACCCCACCCCGTTCGTCACTTGGGGTAAAATCTTCCGGGGTAAAAATTCCCGAATTCACCAGATAGATAACGAGAGAATCCACCACCGGGGCGCGAAACTCCTCAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACGTTTAACTTTCAAAGAAGTTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 18559-17569 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACSK03000249.1 Arthrospira platensis str. Paraca isolate UASWS Contig249, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 18558 35 100.0 38 ................................... ATCAATGATGGTTACTCCTGGGTTTCCGCCAGGCAAGA 18485 35 100.0 38 ................................... TGTCCATTCCTTGGGCACTGGTTTCTGCCCTTGCTCTG 18412 35 100.0 41 ................................... GCCAGTAGTTTGGATCGCTATGGCAGTAGTTACCAGTACTA 18336 35 100.0 39 ................................... TACGGTATTTTCTAGCATCTGTTTAGATACTGTAAAGTT 18262 35 100.0 37 ................................... CAACCTTTATCGCTGGTCCAGGCGGAAGGTGGAGAAT 18190 35 100.0 41 ................................... CGGACTATAGTTAGCCGATGCCATCTCCACAGGAGAGAAAA 18114 35 100.0 38 ................................... CTATTTATTTCGTAAATTTTAGCGGGGCAGACCCCGCT 18041 35 100.0 34 ................................... CATGGGCTATAATTAGCCTTAGCCCATACGGTTA 17972 35 100.0 42 ................................... TAAAAGCATCTTTCGCAGAGAGATAACTATTGTAGCTTCCCA 17895 35 100.0 35 ................................... GGGTCATTTCCAAGCGATGCGACGATGATGTCATC 17825 35 100.0 43 ................................... GATCAATGTTGTTAAAACAAAGTTCCGCAAGTTGGCTATCAGT 17747 35 100.0 39 ................................... CTCGTAAACTTTTGCGGGGCATGACCCACTTCCCCGCAT 17673 35 94.3 34 .........................A.......C. CCCACCAACCTCCCACTCAAAGGAGGAGGCCTAA 17604 35 74.3 0 T.........A.T........C...C...A..GCA | A [17596] ========== ====== ====== ====== =================================== =========================================== ================== 14 35 97.8 38 CTTTAGACTTCTCTGAAAGTTAAACGTATGGAAAC # Left flank : TTTATTGATTCATGGAGCAAAGGGAATCTCTAAACAACGGATGGAAGATTTGCGCTCTGAAGATTTAGAAAATCCAAGGAATCAGAAGATTAAAGATACGGTTCGTGTTTCCTGTTTACCCACAGATATTATAGTACAAATGAGCCAAATTTATCGCCTTGTTGTTGAGTTGATGCCACTTTCTGGCTTTCAAAATGTACAAGATTATCTAACGGTGAATCAGGAAACGGGCGATCCGATTTAACCTTATTATCTTTACTCGGAATTTAAGGAGTGGGTTGGGCAAATTTTGGATCGCGAGCAATAATCTTGTGGGGGTCGGGCGATCGCTGAAACCCTTATTCTTTCGTTGAAACCCCCGGAAAGCCTTCTCTGTCTAAGTTTCAGCTATTCTTATTGGGGTATTATTGCAAATATATCTCAATAATTTGGGTGTTTGCTTGACCCCCACAAAATTGAGTGCTAGAGTACAGTCAGAGCAAGGGTTTCAACCCGGCACT # Right flank : AATAACTTGAAAAAATACCCTCAACTTTTGGGTTATTTTGTTAGAATTAAATTCAGTTTCTTTCCATACGTTAGACTTGCTTAGAAGTCAAAGCGTTGCTGTTCTCAAATGGGTTTTAAACCACTCGATATTCAGCTTTGGGAACGAGCTTTTGCAAAATGCGCTGATGATTAACCGCATCATTTTGTGAACGAAAACGACCCACAACCAAACACTGATTATTAGTAACAGATTCTCGTTCTGAGGCGTTTGGCGATCGCACCAAACACCAGGGATGCAATCTTTCAAAAGCTGTCATTGCTCGTTCTCCTTACGCTTTGACCCCACGATAAGCCGAAGAATTTGCACAAAACAGGGCAGGCAACCCTTGACAAAATCAATTATTTGTGCAGCTCAACTGTTCTTTGAATTCAACAGGCAGATCGTCCCATCGTTCCCAGAGCAAATCCATCAGCGCCAAATGTCGAAGATCGGTTTGAGTCGGGCGGCGGTAACGTTTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGACTTCTCTGAAAGTTAAACGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 23-432 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACSK03000255.1 Arthrospira platensis str. Paraca isolate UASWS Contig255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================== ================================================================ ================== 23 20 95.0 64 ..................T. TCACAATGCTCCAGTGGAGGGCGGGCCTATCGATAGCATAAATAGTCAGACCCTACCAATTCCC 107 20 100.0 55 .................... GGAGCTATCTCTTCTTTCTCAATTTCAAGAATGAGGTCTAACCCTACCAGTTTCC 182 20 75.0 59 T.TC.............A.C CCGGAACCACAAATAATATCTGTTCCGGGTTCTCCTACCTTCTAACCCTACCAATTAAG 261 20 100.0 55 .................... GGAGCCATCTCTTCTTTCTCAATTTCAAGAATGAGGTCTAACCCTACCAATTAAG 336 20 85.0 57 .................AGC TTTTGAAACTTAGCCTTAATAAAAAGAGAATCAGATAGTCAGACCCTACCAATTAAG 413 20 80.0 0 ..........T......TTA | ========== ====== ====== ====== ==================== ================================================================ ================== 6 20 89.2 58 CGCAAGGGGACGGAAACCAG # Left flank : CGGTCAGACCCTACCAATTCCCC # Right flank : AACTCCACAAGGACACCTCGTCGCTTGTGGTGAAAGCGACCGTCAGACCCCAGCAACTCCCCCCAGCAGAGCGATCGCATTTTCACAGCCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCCACCAGAGCGATCGCATTTTCACAGCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCCACCAGAGCGATCGCATTTTCACAGCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCAGCAATTCCCCCAACCAGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCAACCAGAGCGAAACCCCAGAAATTAGTTAATTTTGAGAGCGATCGCCAGGGTATAATCACCTGCAAGGGATTTTTGCTAATTGACTCAATGAAACCAGGT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:-0.75, 7:-1.25, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCAAGGGGACGGAAACCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,0] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 41133-41475 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACSK03000255.1 Arthrospira platensis str. Paraca isolate UASWS Contig255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================================== ======================================= ================== 41133 43 100.0 34 ........................................... ATGATTGGGTGTAGGGTGCGTCAGACACCGAAAA 41210 43 97.7 34 ..........................T................ ATGATTGGGTGTAGGGTGCGTCAGACACCGAAAA 41287 43 100.0 39 ........................................... GGCGGCTGAAATCCACACCGGATAATTGAGGGCTGACGC 41312 43 100.0 39 ........................................... TTGAGGGCTGACGCACCACAAAAGGCTGCTGAAATCCAC 41360 43 93.0 28 .....................................GG.T.. TTGAGGGCTGACGCACCACAAAAGGCGG 41431 43 90.7 0 ........................T...............GGT | CT [41460] ========== ====== ====== ====== =========================================== ======================================= ================== 6 43 96.9 35 CTGAAATCCACACCGGATAATTGAGGGCTGACGCACCACAAAA # Left flank : GATTGTTTATATGGTGGTCAGGGTAATGATACTCTCTATGGGGGTCGAGGTAGGGATTATTTAAGTGGCGATCGCGGTAATGATTTCCTGGTTGGTGTTGATACTAGCGCTGATTTTCCGGGACTGACAACTATTGACACCCTGGTTGGCGGAGAAGGTTTTGATACTTTTGTATTAGGCAATGAAAACGGACCGTTTTACGATAACGGTAATGATGATATTAATGGTGTGGCTGACTATGCTTTGATTTTGAATTTTAACAGCACTACTGATGTCATCTTACTGAGTAATGACGATTATTTATTCTCTACTGATATCCCCCAACCCCTCCCACAAGGAACTGCTATTTTCCGTCGGACTCCCGGCGAAAATGAGTTGATTGCTATTTTAGAAGGGGTGGTCGGTCTTCAATTTGATGGCACTAATCTTGATGATGGACCGATTAGGTTTATCTAGCACCACAAAAATGATTGGGTGTAGGGTGCGTCAGACACCGAAAA # Right flank : TGAATGTATGCACATAATGGCGTTTTTGTCAAGAGGTACAAAAAAAGCGATCGCTTATTACTCGAAAACTCGTGCATCGTGAATTTAATATTTTGCTGAGAGAATAATTTATCTGGCGATATAATCGTAGTTGTAGCCTTTATTTTTGCATAATGACAGAGTAGCCCCTTGGTATCTATTTCTGAGATGATACCATAACCCCTATAATCTCGTCAACTTTTTGCGAGGGATTTTCAATAAAAATGTATTAATTCTTAACGTTCTTTGGAAATTCCAATCGATGGGGCTGTATAAATTAGTAAAGTTTATGTGATGGTGGGTTTTGGGGGGATGGATTGTTGATGAAAAAAAAGGCTATCCTGAAAGTGGATAGCCTGTGAATTATGAAGGAAAAATGGGGTTAAAAATGAGGCTTAGGCGATCGCAGCCATTTTGACATCGCTAGAAGCTAATAACTCCTGCAACTCCTCAGAATCAACGGTTTCTTTCTCGATGAGCAT # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAAATCCACACCGGATAATTGAGGGCTGACGCACCACAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 275-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACSK03000027.1 Arthrospira platensis str. Paraca isolate UASWS Contig27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 274 37 100.0 42 ..................................... GTTCGTTTTGCTCATTCAGCATCGCGCGTTGTGTCAGTCTCA 195 37 100.0 43 ..................................... AGATGTGTGGGCAAGCATCATCATAAAAGCTGACTTTTCTATT 115 37 100.0 39 ..................................... GTGGAGTTAACTCGTCTCTGTCACTTCTTTTGGTGAAGT 39 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 4 37 100.0 42 GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : CAGATT # Right flank : CCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 33-308 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACSK03000031.1 Arthrospira platensis str. Paraca isolate UASWS Contig31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 33 37 100.0 42 ..................................... GTAGCTGTAGTCATTGTTGTGATAATCTTTGCTACCAAGTCT 112 37 100.0 40 ..................................... TGTTTATCGAAATGCGTATAACATCATGTGTTGCTCCTAT 189 37 100.0 46 ..................................... TTGGGTATTGCCCGCCTGGAGTGCTGCAGCTTTCTCGGGAGCCAGC 272 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 4 37 100.0 43 GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : ATATGATGTCCGATTCATCAAATAAATATAGGG # Right flank : TGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 28-372 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACSK03000040.1 Arthrospira platensis str. Paraca isolate UASWS Contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 28 37 100.0 38 ..................................... CCGGATACCGGTTTGGCGAGAATTCGCTGTTGACGACC 103 37 100.0 40 ..................................... TAAGCAGAATACCATTTTTTAAAAGATAGGTATTATCTTT 180 37 100.0 44 ..................................... TATTCTATCAGAGAAAAAACTACTTGACTGGTTTACCTTCATCA 261 37 91.9 38 .................AAG................. CCGGATACCGGTTTGGCGAGAATTCGCTGTTGACGAGC 336 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 5 37 98.4 40 GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : TTTAGTGTCCCCGGAGGATTTTACCCAG # Right flank : AAAC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 10-201 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACSK03000006.1 Arthrospira platensis str. Paraca isolate UASWS Contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 10 37 100.0 41 ..................................... TGTTTATCGAGTATTTGATTGAACTCCTTGCTTTTGACAAA 88 37 100.0 40 ..................................... AATCTGAAGGCTAATGTTTTCTTCGACCTTAGAATACCTT 165 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 3 37 100.0 41 GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : AATAACGATG # Right flank : CTTTGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [11.7-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 859-592 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACSK03000083.1 Arthrospira platensis str. Paraca isolate UASWS Contig83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 858 37 100.0 39 ..................................... TTATCGAATGTCGTCTTAGAGTGCTTTTTTGGATTTGAA 782 37 100.0 41 ..................................... AGGGGGAAGACTCCCCACTGGTAAGCGCCATATTCTCCCAG 704 37 100.0 39 ..................................... GAAATCCGAGCGATTCCACTGGGTTGGTTGTGTTACTGT 628 37 91.9 0 .......................C......G.....G | ========== ====== ====== ====== ===================================== ========================================= ================== 4 37 98.0 40 GTCAGACCCTACCAATTAAGCGCAAGGGGACGGAAAC # Left flank : TGA # Right flank : CTAACTGGTGTGTTGATTTTCTCAGGGTCGAAGTTGATAGAGGTCCGCCAGTGGTCAATGGGGTAGTTAATAGCCATCACCTTTTGCGACCCTAGAGTTAGGGATTCATGCCCAAATTGGGTGGGGTATGATGGTGCAAAATCCGATTAATAATCCCACTGGTAGAAGTAGGCATTTCCACCGCAATTAGGACAATCTTGCCGCCATAGCTTTGAACCGTGGGCGCTTCCGGTAGGGTGTCAATGGTGTAATCACCACCCTTAACATAGATATCAGGTTGTAACTGTTCAATAATCGCCCTAGCAGTGCTTTCTGGAAAAATCACCACTGCATCTACGGGTTTTAAGTGGCTGAGAACTTCGGCTCGCTGTAATTCTGGTATAATAGGACGGGGAGGATATCCAGCCGAGTGGGGTTTAATCAGGCGAACAGATCGATCGCTATTGAGACCGACCACCAGCGATCGCCCTAAACTTTTGGCTTGGGTCAGGTAGCGAATA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCCTACCAATTAAGCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //