Array 1 79347-76675 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYNB01000009.1 Photobacterium phosphoreum strain AK-5 CFSAN065477_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 79346 28 100.0 32 ............................ AGGATGGTTATTCAAACCTTCCGCGCCAACGC 79286 28 100.0 32 ............................ GTCTGATTATTTGGCGGCGAGTTACCCTGCTT 79226 28 100.0 32 ............................ TGTTGATCGGTGGTTATGCTGGCATAGATAAA 79166 28 100.0 32 ............................ GCTACCGCCTGATTTACCGCCCATTAAATCAC 79106 28 100.0 32 ............................ ATCCTTGAATCCTCAAAAAAACATCCAGCTTT 79046 28 100.0 32 ............................ AAAAAAAATTAGAGGTAAAACTTCCTAGTATT 78986 28 100.0 32 ............................ TGATAACACAAGTTAACCGTGGAGATTATGGG 78926 28 100.0 32 ............................ CTAGCTGATGGTGTTCGCTTGGCTATACATGA 78866 28 100.0 32 ............................ TTGTCGTTCGCAGATAAACGCATAGGCACAGG 78806 28 100.0 32 ............................ ACTGAACAAGCCCGCGAACGCGAGTGGGAACA 78746 28 100.0 32 ............................ GAACGCTACGCCTTGGCACAAGCTCAATTTAC 78686 28 100.0 32 ............................ AAGTACGTAGCTCATCAATACGAGAATGACGA 78626 28 100.0 32 ............................ AATGGTCGAACGCAGGGACCCACAGCGTACTA 78566 28 100.0 32 ............................ ACTACCGACATCGACCGATGTTAAATTATTAG 78506 28 100.0 32 ............................ GTAAAGAAAAGCAGCGTTATCATATGGTTAAA 78446 28 100.0 32 ............................ GAACCGCGAAGATGATGATTTCATTGCAGAAG 78386 28 100.0 33 ............................ GTTGTTGTATTGCCTTCTTCTGCTGATGATTTG 78325 28 100.0 32 ............................ CAACTGGGGATCACCGATACAACAATAAGTAA 78265 28 100.0 32 ............................ AAGGAGAATTGGCACAAATAGCAGGAACGCGA 78205 28 100.0 32 ............................ AGTATTTGCTGTTATTAAATAGGGAATGTTTA 78145 28 100.0 32 ............................ AGCTACTAAGCCTGATAATGACGATTGGCCTG 78085 28 100.0 32 ............................ TGATAGCTTTATCTACAGGCGAAATGACATTA 78025 28 100.0 32 ............................ GCGTCCACGTTGGCTTTAGTGGTTTTCGCAAC 77965 28 100.0 32 ............................ AATAGTACATTTACCGCAACCACTTCACCATC 77905 28 100.0 32 ............................ AAAAGATGGAACGGTTTTTGATTGATGCTAAC 77845 28 100.0 32 ............................ CTTGTGGAATCATATTATCGAGCGAACTGAAT 77785 28 100.0 32 ............................ TAGTAATACGGGGGGAAAGGTTTTTGCTTGTG 77725 28 100.0 32 ............................ CTGGCGATGTAATAGAGGTGGCAAGTAATAAG 77665 28 100.0 32 ............................ CACGATACTCAACCGCACTGCAATGGCGAACC 77605 28 100.0 32 ............................ TTAGTTGATGATGGCTATGGCGGTAAAGAGCC 77545 28 100.0 32 ............................ ACTTGAAAGGAATGATTGTAAAAGTACCGACT 77485 28 100.0 32 ............................ AACCTGAGCAGCTACGCGAGGTCGAATGAACA 77425 28 100.0 32 ............................ AGCGGCGTTATGGTGCACGACATTGTTAACGC 77365 28 100.0 32 ............................ GATGTCAACAGTTAGCGTGTAGCCTCGACCAA 77305 28 100.0 33 ............................ AAGAAAGAACAACAACGTGAAGAAGCGAAAGAA 77244 28 100.0 32 ............................ AACAACTCGGCGGTCATTGACCACCTCTCGTG 77184 28 100.0 32 ............................ TGAGAACATTACTACGTGCTTCATTTAAAACT 77124 28 100.0 33 ............................ CTAAACCAATAGCATTCAAATCAAATACACTCG 77063 28 100.0 32 ............................ AGCTGGTAGTGATGCTAAATACGACGCTCTGG 77003 28 100.0 32 ............................ GAAGCCATTTGGCCTTCACAGAATATCCATTC 76943 28 100.0 32 ............................ GATTGAATAAGTTGAACCGATTAGCTCTAAAT 76883 28 100.0 32 ............................ AACTAAGAAATGATCTGGAGTAACGCCCAGGT 76823 28 100.0 33 ............................ CGCTAACACCACTTTTTTTTATAACATTCAATA 76762 28 100.0 32 ............................ AAACAACGACAAAGATTACTGATCCTGAAATG 76702 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 45 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACGAGTGTTACGGCTATTATCGCTATTCCAAGTGAGATTAAGGGTTATCAAACTGTAAAGCGCGTACAAGCAAAAACTGCGAATAATAAGCGTAAGCGGTCGATAGCTAAAGGTTGGATCAGTGCAGATGAAGCGATCCATGCTATTCCTGATACAGCTGAGCGTAAGTTAACCTTACCTTATGTTCAAATACAGAGCTTATCTAATCAGAATGTTATGCGGGTATTTATTGAGCATAGCAAGGTAGTTAGTGATGCAACGGATGGTGCATTCAGTAGTTATGGATTAAGTGCTACGGCCACAATCCCTGTATTTTAAGTGCTGTTTTGATTGTAATAGCAATAATGGGTTAGATGAGTATGCATTTAACCCTTTTTTTTAGCCTTTATTAGTTGCATTTAAAATCAATGACTTATAATCAGAAGATAAAAAAGGGGTAAAAGAGGGTTTTTAGGGTTTTATTTAAATTAAACAATCGCTTATTATAGTTAAGCTTCA # Right flank : AATCTTAGAGTCACACTTCTAATTATTACGAGGCAATTAAAATATAATTTGATGTTCAAATTGCTACTTTAAATAATAAAGCTTAATTAACAGCTGCTTGGTCATGCTGAAATAGAATAATAATTTAAATAGATAAGCATAAAGTCTTCTAATGATAAGCCATATCATTCATATTGTTAATAACTTTTCTATAAACCATTGAAGGTTGTAGCAGCGGTGTTTATGATGCATACACAAAGGATTTGTCGCTGTTCGGAATGATAAATGAAGAAAGAAAAATACAATAATATTGCGGGTCATATTTTTAAAGTAGATGCAGTGAAAATAGCAGTTTATGAGGTTATTACGCATAAGATGACAGCATATAGGGCTGAAATTGTGTATGGAGTAACGCCTAACACACTGAGTCGTTATGTTAAAAAACTTAATACCGAGTTAGAGTATCTACAGGCTTTGGGTGTAAAAACTGAATAATGTTATATGAAGTCCAGCGCCTGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 88146-89374 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYNB01000009.1 Photobacterium phosphoreum strain AK-5 CFSAN065477_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 88146 28 100.0 32 ............................ ACTAAAAAAACAATAAATGTGGGCTAAATGAA 88206 28 100.0 32 ............................ TGAACAGGATAAGCCCCGTAAATATCCCCTTG 88266 28 100.0 33 ............................ CACAAAATGACAAGATGATTCAGTGCGCATTAT 88327 28 100.0 32 ............................ AATTCGGTAATGTTCAGTATTTAGTACCTGCC 88387 28 100.0 32 ............................ AGAAGGTACGGTAATCACCGTTAAAGATGCAA 88447 28 100.0 32 ............................ ATACACATCTTTCTTGGTGTTATATTCTGTTG 88507 28 100.0 32 ............................ AATACCTTCTGGAAGGCTTTCAAAGCTATCCT 88567 28 100.0 32 ............................ CAAGAACGAAACCCGTTTAGCCATATGGTAAG 88627 28 100.0 33 ............................ ACCAAAAGGGTTGCTATAGTGAATATGTTTACC 88688 28 100.0 32 ............................ AGATTTAGCCGCATCCAAGATACGTGCTAATT 88748 28 100.0 32 ............................ AGGTAAACATAAGAGCGCGTTTACTTGGTTTC 88808 28 100.0 32 ............................ ACCTCACCATCCGCTGATTTTAGCTACATGCT 88868 28 100.0 32 ............................ TCAATCAACACTCGACCAAGGGTTATGATGTT 88928 28 100.0 32 ............................ CGTGGGATGGAAAGACCACAATCCGCCTTTAA 88988 28 100.0 32 ............................ AGAAGATGTGACATATTGGTTTGCACCTGCTG 89048 28 100.0 32 ............................ GATACCATTACATATAAACACTTATTTAATGG 89108 28 100.0 32 ............................ GTTACGACCTGTTTGACCTAACCACCGATTAC 89168 28 100.0 32 ............................ TGTTAAATTCACAACTTCTGTAACGCTTGCTG 89228 28 100.0 32 ............................ TGCTGATGCAACAGATGCAATTAGCAAATATC 89288 28 100.0 32 ............................ CGCAAAAGGCACAAAACTGGCGTAATTCTGCC 89348 27 85.7 0 ....................G..-T..T | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCTACTTCATTGGCTGAAAATAAGGGTGTTCCGCCACCACCACAAAAACCAACTAGCACGCCTGCTTTAGCTAATTCGCGCATTGCAGCTTGAGTAATAGAAGTGCCAGTTCCCAACATTATGGAAGTCGTGTTTGCTATCGGGATATTCCAATATAATGATTGCTTACCTTCATCAGTAACATACTCAACCCGTCCACCATTCACAAGCACACGACAATGTTGCAAATAATAAAGATTGGCACGTTTTGAATGAATAATGGTTTTCAGCTCACTCGGTGTGAAAGACTTAGCGCACATAGCGGTCACCAACAGTAAAAAACGCATTATATACATAGATACACATAATGCGTTTAGAGTGTAATCACAAATACCCTTTTTATTTGGTAACTATTCAGGCTATATAAAACAACAACTTAAAATATCAGTTTAAAAAAGGGTTTTTGGTGAGAATTTACTGTTTGGCTTTTATAAGCAATAACTTATACTAATAGTGCTTCA # Right flank : TTACTGGCAGCAGCCATGGCTTCTTTTATTTCATCTGAGCCATAACCTTTTGATGACAGGTAGGCATAGGCTTTACTTTTATCTTTAAAATTCGACAAATCAAACCGCTTTTTTGCTAACACTAATTGGCAATTTTCATAAAAATCGACCTCACCTGCTTCCTCTAAATCATAGAAGACTTGCTCAAGATTAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTGATCACTGTTTTGCCTTTGAGCTTTCTCACCAATTTCAATACTTCTGTTTCAAGATCAGCATTCATGCCTTTGATTTTTGCTTTGGTTAATAGCGTATCGGCAGCATCGTGTTCCGCAATCGCTCTTGAAATATCTTGAAAACTGTATCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTGGTTTGGCTAAAATCATCATAACTATCTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAACTAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //