Array 1 77465-78226 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKKY02000003.1 Clostridium sporogenes strain PA 3679 isolate Camp Contig_1c, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 77465 30 100.0 40 .............................. TGATTTAGATAACCGCTTTTATTTATCCATTCTAGTGAAG 77535 30 100.0 34 .............................. CAAAGTAGACTACCAAAGGTTTGGCTTTCAATAA 77599 30 100.0 36 .............................. TCAAAGACAACCATGTCTGTTGATTCATAATAACAA 77665 30 100.0 37 .............................. TTTGCTTTAGACTGTAGCCTTCTTCTTCTAAGGTATC 77732 30 100.0 37 .............................. TTGTATAACTTTTCTCTTTCTTGTCTTTCTTTTTCCA 77799 30 100.0 37 .............................. GATTGTTGCTCCAGTTGTTTTTGTATTTGCAACCACT 77866 30 100.0 36 .............................. CTAAATTTTATACCCTTAAACACTGTTTCTAATTTA 77932 30 100.0 36 .............................. TTCCTATATAATCATTAGAATTTAATTTTTCTAATA 77998 30 100.0 35 .............................. TGTACATACATTTCATGTGCTTTAGAGTATGGAAC 78063 30 100.0 37 .............................. AATATATTAAAAATAGATGTGCATACAGTTACAGATT 78130 30 100.0 36 .............................. TTGCACGTCCCATAAGGGTACTGATATCAAACTGTT 78196 29 80.0 0 ........A........T..A.-.AA.... | AC [78201] ========== ====== ====== ====== ============================== ======================================== ================== 12 30 98.3 37 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : CATAGGCTGATCCAATAGTTAAAAAAAGTTCTGCGGTTATATCAGAATGAGTAAGGGTATAGCGTCTTCCTAAAGTAGGCCCCGTTGAGGTTACACCATTTCTAAATTCAACTGAAAGTTTATCAGTATTAAATTTGTTCATTTAATCCCTCCCCATACAATACGTTTTATACAATATTATATGATAGGATTTATGAATTTAGTATATTTATATATAAATCAATTTTAATTATAATATTTAACTTAAATCTTGTACCAGATCTTGTACTACCAATAATATATCAGCTAATAGTACAAATAAAATATTTTCATATTAATTGAATTTTTCCAGGCACAATAAATTTATAAACCTATTCTAGTCATTGATATATAAGGATTGGAATAGGTTCTTATTTTGTATTTATAAAAAAACAAAATCACTTGGAAAACTTTCTACGAAACCTTGTAAAATCAATGGGTTTATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TTAATATGATATATAATAAGAATCATTAAAAGTCTTAGAAGAATCTAAGGCTTTTATTTTATGCAAAGTTTTAGAATAGAATATAATTAGTTAATTAAGTTTCTATTAACAAAAACAATAATACTTTTAAAATATAAATAGAATAATTGATTATATTGATTAAAGGGTATATGTTATAATATAGATAAATTTGTATAAAGAGGTATATAAATGGAATTTTGGGAACTGATTGTAACAGTAGATGATAGATCTTGGCTGCAAAATAATGGGGATTTAGATTTATCTACGGGTAGATTAGAAGATAATTTGGAAAGGAAATATAAAAACTTTTTTAATGAAGATATAGATGTAAAGGATAAATTTATAGAGAGCATAGAGTTTAAGAATAGAAAACCAATGCATTACAACTATAAAGGTATAAAATTATTAGCAAATAAGGTAAGTATACAAGTGAAGGATAATGAAGAAGAACAGAAGGTGGCTTTCTTAGCAAGAGCAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 82436-82726 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKKY02000003.1 Clostridium sporogenes strain PA 3679 isolate Camp Contig_1c, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 82436 30 100.0 34 .............................. ATATAAATGAATTTGATTCTAGTCCTGCGTTTAT 82500 30 100.0 36 .............................. TATTATTTCTTTTGATTGTTAGTTTATTCATTTTAT 82566 30 100.0 35 .............................. AGGGTTAATGAAAGTCAATCTAACGAATCATCTGT 82631 30 100.0 36 .............................. GTTATTGCTAAGGTTGGATTAGTTATTTGACTAGGA 82697 30 83.3 0 A.......G..............C....TC | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 96.7 36 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : TAAAGGTTTTGTTTTAAATACAAATGGACAAGAATCAATCATTAATGCTGATAGTGCCGTTGTGGCTATTGGATATTCATCTGAAAAAGACTTATATAATGAGGTTAGATTTGATATTCCAAATGTAAGACTAATTGGAGATGCTAATAAAGTTCAAAATATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAATATACCTTTGCAAAAAACTAGAATGGGTTAATATCCATATCTAGTTTTTTGTTCTTTACTGAAATTCTATAAGTATATGAGTGTTTGTTATGTACTACTTGTGTATATTTAAAATTTTCCAAGTGAATTTAAAATTAAAATCTATTCTAGCTATTGAAACATAAGGCCTAGGATAGGTTTTTGTTATGTGTTTTTGAAAAATCAAAATCACATGGAAAAATTTATATAAAACCTTGTAAAATCAATGTTTATATGATATTCTTAGAAATAAGGAATGGGTATTTTACTATG # Right flank : CAAGAAATGCAATTATTTGATTTGGAATAATCATTTATATATGGGAATAATTTTTTGTTTAGTACTTCTTTGGATTAAGGTATGGGATTTTTATTGACTAAAATATTTTTGAAATTTAGTTTTAAGTTTAGGTTGTATTTTAGAGTGCTGTTGGAATTTTAGCCCCCATTAAAAGAAGTTAAATATTTTTCTTTTAATGGGGGCTATATAAATTGCTAGATACTAATTATTTAAAAATTTATTTAATGAATCATTATCTTTAAATAAGTCTTTTAAGTTACCGTATTTTTGTTCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTCTCTACATTAAATTTAATAATTTCAGCGTTTGTTATAAGAGACAATAATATCACCGCATTCTTTTCTAAGAGTTCTTCAACTTTTTTGTCCTTCCAAAATTTGTTATAATTTTCTTCCCCTAAATTTTCATTTGTTTTATAGTTAACGGTTATTTCATATGGCT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 1768-3071 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKKY02000018.1 Clostridium sporogenes strain PA 3679 isolate Camp Contig_6a, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================== ================== 1768 30 100.0 35 .............................. GTTTCATAAGCCATGTTTTTACTTGGATTTCTTGC 1833 30 100.0 34 .............................. TTACATAATCTAACAGCACCATTATTCACTTTTA 1897 30 100.0 35 .............................. AGTTTAGCTGGTTTCTATGCTAAAAAAGCAGAAGT 1962 30 100.0 37 .............................. TATATAGGATAAAGGTTATATGTAGATTCAGATACTT 2029 30 100.0 36 .............................. TTTCAACTCCTTTTTCGCCTTTAAAAAAGTCTTTTG 2095 30 100.0 37 .............................. TCTGTAAAAGTATTTAATTCCTTATCCCACATACCAA 2162 30 100.0 34 .............................. TTAAATAACTTATATTTAACGGAACGTAAAAACT 2226 30 100.0 36 .............................. AGAAAAAACAGAGAAGTTAATAAGCCAATTTAAAAA 2292 30 100.0 36 .............................. AATATATCTGCATTTTCTTTGGTCTTACACACATTA 2358 30 100.0 36 .............................. ACTTTATAAACAAGCTGGAAATAGTATTGTAAGTAA 2424 30 100.0 37 .............................. ACAACAGTATTTCCCATAGCTTTTAATTTACTTATTA 2491 30 100.0 36 .............................. GCTAATATTAATATAAATCCTTCATAAGCTTTTTTC 2557 30 100.0 36 .............................. GTTGCTCCATCATTTATAATTACAGCATCATTTATA 2623 30 100.0 35 .............................. CTATTCCACTTTTTTAATTCTGTTATATTACATTC 2688 30 100.0 36 .............................. TCTTTTTACCCTCCAATATTTGTATTGTGATACTAA 2754 30 100.0 37 .............................. TATATACCTCTCACACATACCTGTATATGAGGTACAT 2821 30 100.0 36 .............................. AGATTTAGCCCTAATATGACTAGAACACCAGAAGGT 2887 30 96.7 37 ................G............. ATAGAATAGTACACCAATATTTCGATGATTGGGATAA 2954 30 93.3 58 ......C............G.......... TGTATTAAAAAAGATAAAATATTTAGCAAAAACATGGTGGTATACTTGAAGTGCTAGA 3042 30 73.3 0 ...T.TG.A..TA..C............G. | ========== ====== ====== ====== ============================== ========================================================== ================== 20 30 98.2 37 GTTGAATAGTAACATGAGATGTATTTAAAT # Left flank : GCTTTGGACAGGTTTGTTTTAGATATTTATTAAAAAACGTAATCACTTAGAAAAATTTTTTTCAAACCTTGTAAAATCAATGGGTGTATGATATTCTCAAAAATAAGAAATGGCTATTTTGCTATGGTTGAACAGTAACATAGGATGTATTTAAATTAACTGAAGCTTCTGTATAGTTTCTTTTCACTACGTTAAACAATAACATGAGATGTATTTAAGCAGGGAACCCAAATCTCTAATTTGTCGTGAGTCGCTTACTCCTTCGAAAATGATATAAGGAGTTTCATTAATGAGCATAATGTATATCTTATATTTAATTAAATTTTTCCAAGTGAATTTAAAATTCAAACCTATTCTAGCCATTGGTATATAAGGCTTAGAATAGGTTTTGGTTATGTGTTTATTAAAAAACGTAATTACTTGGAAAACTTTCTATAAAACCTTGTAAAATCAATGGATATATGCTATTCTTAGAACTAAGGAATGGCTATTTTACTATG # Right flank : TGAATTATTGATTATAATAAAAAATAAAAATAGGAGTATTTAAATTTTTACATTTGTAGTGTTGCAAAGTACATTGTTTTTATAACATGCATTGAGATTTCTAATATATAATAATTAGGATTTTTAAACGTTAAGATTTATTTAACTAATAAAACCTGTATATTGTTTATTGTAAGTAAAACCGTAACATCAATATGTATTTAAATTTGCAATTATAAAATAAATATATACAGGTTTTCAAAAAAATACAAAAAGGTATTGTAGTATAATCTGATTACTATTATAATTTTATTAAAGAAATAAATAACGTCATTGTAATTATAAAATAATTATAATAAATAATAAGATATTAACTAACAAAAGAAAATAAAAAAGAGGTGATAATAGGAGGGTGAAAAACTATGCTAAGAAATCCAAAACAAGAATTACAACAAGTAGTTAAGTTTGCTAAGAAAGGAGATAAAAAGGCTAAAGAAAATATATTTATGAGATTTAAACCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 15815-17546 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKKY02000018.1 Clostridium sporogenes strain PA 3679 isolate Camp Contig_6a, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 15815 30 100.0 34 .............................. ACTTATAATTACTTTTGATTTTAAATCTCTATAA 15879 30 100.0 36 .............................. AAGAGTATTTCGAAGAAGTCAAATCCTTTATTTGAT 15945 30 100.0 36 .............................. CAAGATTTGCAGTATCCTATATTTTCTGCTATATAA 16011 30 100.0 36 .............................. GGAGATGTTAAATTCAATGTCTTATCACTAACATGA 16077 30 100.0 36 .............................. GCATTATTTTAATTCTCCTTATTAAATTATTTTGAA 16143 30 100.0 35 .............................. GCTAACATGGTTATAAAGCTTCAAAGTAAATTAAA 16208 30 100.0 36 .............................. TTTCTGTTATATCTTTTTCGTTTTGGCAGGCCTTAT 16274 30 100.0 36 .............................. AATATAACTTTCACATTAGGAAATAAGTTTTTATCT 16340 30 100.0 35 .............................. GTTATTTCATTTAAATTTAACCAGTATTCTATTTG 16405 30 100.0 35 .............................. TAGTTAAAATGTGAATATCTCATATCGCCTACTAT 16470 30 100.0 37 .............................. ACTTTTTCAGTACTTATTTTGTATCACTCCAAACTAA 16537 30 100.0 36 .............................. TTATTGTATTCAAGACGCTTTCGTCGAAAAAACCTT 16603 30 100.0 35 .............................. GGAATCATTTCTATTTGTTTGGGCTTGGCTGGTGT 16668 30 100.0 36 .............................. ATGCATCATCCCCGTGATCATTTTCTTTAACTGGTT 16734 30 100.0 34 .............................. TTATTAGCTTTTTCTGGACTAGGAGGTTCATTAA 16798 30 100.0 34 .............................. GGTATTACAACTTCGTGTGGAATTTCCCACTTTA 16862 30 100.0 34 .............................. TCACTTTCTTGTTTGTATGTCCATTTAACAGTGC 16926 30 100.0 35 .............................. CTTCTTAGCTTGTTTACCTTTGTTTTTCTTAGCTT 16991 30 100.0 36 .............................. TGTTTACGCTTTTGAGGTATTTCTTTTTTAGATCCT 17057 30 100.0 34 .............................. CCAGTTACACAAGCATGGTCCTTATCTTTGACTG 17121 30 100.0 35 .............................. GAAGTATTATCATATGTTGAATTAGCACTTGGTAA 17186 30 100.0 36 .............................. GGTATTCTTCTAACTTCATCTCCTGTAAACAATCTT 17252 30 100.0 36 .............................. ACTACTTTTTGAGAAAGTTTTCTAGTTAAACTTTTA 17318 30 100.0 37 .............................. AGGAGTTGAACTTGTAATTGTTCCTAGCAGATGGTGT 17385 30 100.0 37 .............................. ATTAATTTTAGTATGTTAAGTATTTTATCTGCTAAAG 17452 30 100.0 35 .............................. TGAAGTGCTCCTCTTAACTTTGTAGCCAATACTAT 17517 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 99.8 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : ATAGGAAGTTATCGTTTGTTTGGAATAAAGTTTACAAGTTGAACATTAACATGAGATGTATTTAAGTAGCGAACTGTGAGTCACTTACTCCTTGGAGGCAACGAGAAGGAGTTTCATTGAGTGATTAGACATTTAGTATTTTAAGTTTAGGCATGATATGAACCCAATAAAATAATAATTTAAGAAATGAAAAGTATGATTTATAAATTTATTAGCTTAAAGCAGCTATTCTTAATGGAATGGATGCTTTTTTTAATTGAGCTTTGTATAAATACAAATAAATCTAATTTTAGTGATTAATCAGTCTGATTATAAGTAAAATGTTTTTCCAACCACATTTAATTTTAAAATATACCTTAACCCTTGAAATATAAGGCTTAAGGTATGCTTTATTAAAATTTTATAAAAAATGACAAACGGTTGGGAAATTTTCTTTAAAACCTTGTAAAATCAATAGTTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : CAGAGAGCCCAAATCTACGATTTGGTGTGAATCGCTTACTACTTAGAGAGTGGCATAGGGATTTTTATAAAACTAAACTATGCATTGTGATAACTTCTATATAAATTATTAGATAAAGGGAGATTTTATGAAAAATAAAGTTACTAATAATTTAAATTTTGTTGCAGCAATATTGCTTGGAATTGTGGCTATGTTAAATTTTTTTCAGCATAAAACATTGCTGGGAATTACATATATCTGTTCAGCAATATGTTTTTGTACACTTGAATTTTCAAAAAAGAAAAATGCAAATCATAAATAAATTTAATTTTAAAAACCTGTCTATTTTTAGGACAGGTTTTTAGTATTTAAAGGGGATAGATAAAATAATTTTTGGTAGCTATGTAAATATTGTATATTATTTTATATTTTTGAAGGATTATCCATAACTCTGTAGAAGAATATTTGTGTAAGAAATATATTATAAAAATATGGAGGGAGTATTGTGGATAAATTTCGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 50439-45692 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKKY02000014.1 Clostridium sporogenes strain PA 3679 isolate Camp Contig_4b, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 50438 29 100.0 35 ............................. AAAAATAAAGATATGTCTTTTGAGAAGCTCACAAG 50374 29 100.0 37 ............................. GAATAACCTCTTCGTTATACCCCTCAATCCTTGCTTC 50308 29 100.0 38 ............................. TCTTTTTACAATGATGATGGAGAATTAATTAAACTACA 50241 29 100.0 35 ............................. TTAAACTAATAACAATAGTATTTATTACAGACTTG 50177 29 96.6 36 T............................ TTTGATGAAAATATTTTGATTGATTTATTTTCGTTC C [50176] 50111 29 96.6 38 A............................ ATTGTATGGTGTCAGGAAAATGGTATAGAAATAGAAGG C [50110] 50043 29 100.0 37 ............................. AGCGTTTGTTTATGTTGGCCCTACCAGGAGTGGTAAA 49977 29 100.0 37 ............................. AAGTCTAGGATATAGGGTAAATAAAGCAAATAATTAT 49911 29 100.0 36 ............................. AAATTTTGGGATGAGAAAAGAAAAAGGTATGTGCTG 49846 29 100.0 37 ............................. TCAGACAGCTTATTATTAATGATTTGAAAATCTTTAT 49780 29 100.0 37 ............................. TGCGTTATAGTTCAATTTTACGTTAATTAACGTAATA 49714 29 96.6 37 A............................ ATTCTTTCTTGTTATTGGTTTATATTGAGCATCTCCT C [49713] 49647 29 100.0 35 ............................. TTATTAGACTGTGCTAATTTTATGACTGTATCTGT 49583 29 96.6 35 A............................ TATTGTGTAGTTCCTTGATATGGTATATCACAATA C [49582] 49518 29 96.6 37 A............................ TTACACCATTTTGGTCTATATAAAATAGTTAAATCTC C [49517] 49451 29 100.0 37 ............................. TTAGAAAAATATATGTATTTAAGAAAGATAAGTGAAA 49385 29 100.0 38 ............................. ACATGGATCTAGATAAAAAAGCAAGTAGTGCAATGATG 49318 29 100.0 36 ............................. TTGAAAACCCTTCTTTTTCATATTTATCAAAGCACT 49253 29 100.0 38 ............................. TTGGGATTTTGGACACATCAAGATGTATTACGATATAT 49186 29 100.0 35 ............................. GACGAATATTCTAGTGTTTCTATTTTTATTCCTTG 49122 29 100.0 37 ............................. TCTTCAAAAGTAATATTCACTTTCCTATCATCTTCAG C [49121] 49055 29 100.0 35 ............................. GTGGCAGGGAGTGGGGCAACACTAAGAGCTTGCAT 48991 29 100.0 36 ............................. AGTGCTTTTCGTGTTTTTAAATTTATTCCATTTGCT 48926 29 100.0 36 ............................. TATAATCAGCATATCTCATTATTATTTTTGCATTTT 48861 29 100.0 37 ............................. TAAAATATTTTAGAATTATCTCCCTTTTGTATTCCAG 48795 29 100.0 38 ............................. ATGATAAATTAATTTATACAGATGATGAACTTATGACA 48728 29 100.0 36 ............................. TATGTCTACTTGCATATAAAACCCTGTAGCAATTTC 48663 29 100.0 37 ............................. TAAAATTGATTATAGTAATGAAAAAGAAGTAGAAACA 48597 29 100.0 36 ............................. TAGGCATATTGGAAAACAAAGATAAAGTAGAAAGCG 48532 29 100.0 37 ............................. CTCAATTCTGCTTGTAATCCTTGCAACATTTCCTTAC 48466 29 100.0 37 ............................. TTATTGCTAGAGGCATATACATTAAATGTATTATTTC 48400 29 100.0 35 ............................. ACTCTATGTTTAAACATACCAGACCACTTATAAAA 48336 29 100.0 38 ............................. CAATTCTCATATAATAGTGGTTAATCATATTAGCGAAG 48269 29 100.0 36 ............................. AATATATTATCTGTTTTAATTCCTAGCTGTCCTGCT 48204 29 100.0 37 ............................. TGGGTATTGGGAATTGGTGCTGCAACAGTTGCTGGAG 48138 29 100.0 37 ............................. TTTTAACATTATATAGCCCTCCATTTATTTGTTTTAT 48072 29 100.0 37 ............................. CAAAACAATCAAAATTAACATAAAATTTAAACATTTT 48006 29 100.0 37 ............................. GTAGAAGCAGATAAAAACTTAAAGGAAATAGAAAATC 47940 29 100.0 37 ............................. AAGAAGAGGAGGTAATAAAATGATAAATAAGTCAAAG 47874 29 96.6 36 A............................ ATGTATAGAGATTTAGGGAATAATAAAAGTGTTCAA C [47873] 47808 29 100.0 39 ............................. ATATATGGGAAAGGTTCGGAAAAGAAATAGACGAATATA 47740 29 100.0 37 ............................. TAGCTTTGTTATAACATATTACTTCCATTTTACTATC 47674 29 100.0 36 ............................. TTAGCAGTTGCCATTTGAGGATCATCTACTAACTTA 47609 29 96.6 37 A............................ TAGTATTTACTAATTGCTCTTTTGAACCAACATTTGG C [47608] 47542 29 100.0 38 ............................. ATACGTAAACCAAAATTATTTTGATTTAATTCCATTTC 47475 29 100.0 37 ............................. AATGCAGATGCTATTAACACGTCTATAAGAGACCAAA 47409 29 100.0 37 ............................. TAATATTATTTCGTGGAAATATAATTCATGAAATATA 47343 29 100.0 37 ............................. TTAGTGAAAACAATAGCATATGTATCAGCCACTTTTG 47277 29 100.0 35 ............................. TAATATTATTTCGTGGAAATATAATTCACGTAAAG 47213 29 100.0 37 ............................. ACGGCAGTACCTAATATCTCTGAATAAGCTTTATCTA 47147 29 100.0 35 ............................. CTGGTTACAATAAATTCATTTAACAAAACGGCATC 47083 29 100.0 37 ............................. GCAAATGGAGAAACAGTTATATGCTTAAGTTGGTATT 47017 29 100.0 36 ............................. GAAACTACTTTAATATATGCAGATTTAAATCAAGAG 46952 29 96.6 38 A............................ TAGAGAAGATAGCCAAGATTATCAATGGATTAGTACAG C [46951] 46884 29 100.0 36 ............................. GGATTATATAATTTTGCTATAAATAAATTAGGATAT 46819 29 100.0 36 ............................. ACAACTAGATGTTGGAGATAATTTATTCCGTTACAA 46754 29 100.0 36 ............................. ACATAGTTATAGCAACAGTTACAATAGTATCTTACG 46689 29 100.0 37 ............................. AGTACTTATTTATTGAGAACGTTAAAAACTTACTTAG 46623 29 100.0 37 ............................. GTATTTACTTAATAGAATATATGGTAATCCCACTAAT 46557 29 100.0 37 ............................. GCGACAGGCTTACAAGTAGTTGCTGTAGATGGTGATA 46491 29 100.0 37 ............................. ACATATATAGACATAGAAGTAACAATAAACATAAAAC 46425 29 100.0 37 ............................. GTAGCTTTATATATAAAATATGATGAAGTCAAAAGTA 46359 29 96.6 38 A............................ TTTTCTAAAAAGCAAAGGAAAGTATTGAATTGGTGGAC C [46358] 46291 29 100.0 37 ............................. GAAGAAGATTTATTATTAGCTAGAGCATTAGCTGATA 46225 29 100.0 35 ............................. AAATCAATTTGATGCTTTAGTATCTATGGCTTATA 46161 29 96.6 37 A............................ AAAAATTCAATTAACAGATGAAGAAATAAATAGATTT C [46160] 46094 29 100.0 38 ............................. GATCTAAACAATAATGTAACCTATGAACTTAAAATAGC 46027 29 100.0 35 ............................. AAGGAACACCAATATATGCAGTAGCAGATGGTACT 45962 29 72.4 17 .............CTA.A...T.TA.T.. AACAATTAGAACAAATA Deletion [45917] 45916 29 86.2 37 A...........T......G...A..... AGCAGTAAAGAACTTATATTAGAAGAACTTATAGATG 45850 29 96.6 37 A............................ AACTTCATGGAAGAGGTAGGAGGTTATGTATGGGATG 45784 28 93.1 36 ...................G-........ TAGCTTTTTTATTTCTAACTCCGTCTTCCTGTTCTG 45720 29 75.9 0 A...............AG.TGG..C.... | ========== ====== ====== ====== ============================= ======================================= ================== 73 29 98.5 36 CTTTTATATTAACTATGTGATATGTAAAT # Left flank : AGGTGATGATATATATAAACCATTAAAGGCTTGGTGGTGATAATTTATGTTTGTTATATTAACATATGATATAGAAGAAAAGAGAATTAATAGAGTTAGAAAAACGCTAAAAAAATACTTAGTTTGGACTCAAAATTCTGTGTTTGAGGGAGAAATAACAGAAGGAAAGCTACATAAATGTCTTTCTGATGTTAATAAATTAATTGACAAGAAGCTTGATTCAGTATATGTTTATAGAGTAAAAAATTCTAAAAATATAAAAAAGGATGTAGTTAGAATAGAAAAGAGTTTTGATGAATTATTTTTATAATTAGTTTTGCATTAAACCTAATTTTAAATTAATTAAGGTTAAACTATTGAAATTACTAGCTTTCTTGACAATAAAAAATAAATACTAAAAACGCTACTGAAGGTTTACTGCAAAATGTGGAAAATATGATAGATTAAGCATTGCTATAAATACAGTAATGGCGGTGGTTACAGGCTTTTTGAATTTTAGG # Right flank : GTAGATCCTATAGCATCAATTGGATTTAAGTCAATATAGTAGACACAAAAACACGAATTTTTATGCAGTTTTCTTTAAAGAATCTTCAAGTTGTTGTGGAGTCATGTAACCAATACTGCTGTGAAGTCTTTTTCTGTTATATCAAGATTCTATATACTCAAATATTGCAAATCCGGCGACATCAAAATCATAATATATAGCTAAATTTACTTCTTCCTTCTTTAGCGAAGTGTGAAAGGGTTTAATGTAGGCAGTATCATAAGTGATTTTAATAATGTTAGAACTAGACATTATACTGTGAAAGGGTTTAATGTAGGCAGTATCATAAGGACAATCCTTACCGCTGAAAAAAGTGAATTATATTAATTCCTTTAAATATGTTTAACTGTTATCAAGCTTAATTTAAGAGTTTTGGAAAGATTTATGCTAGACTGCTGTAAAATTAATAAAGGCAGAAAGAAATCTGCCTTGATTTTATCCGTTTCTATAAGTTTGTATAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [37-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //