Array 1 42676-42442 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ957679.1 Streptococcus agalactiae strain PSS_7632a Scaffold158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42675 36 86.1 30 NNNNN............................... ACAGCTACTGTAAATTCTGCTTTTACGGTT 42609 36 100.0 30 .................................... TTTAACCTTTGAAAATGTGAAAGGCTCGTA 42543 36 100.0 30 .................................... TAGTGCAGTTGTCAAGGAGATTGTGAGCGA 42477 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACTTACAAAATCAGTTTCATCAGCGTATAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCGCTCGATTGATGCTATCAACTATATTGAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATGTAAGGTATTGTAAAACTTCTTCTTGCGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTCTTCAAGAGAACTTGTAGAACAGCTTCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACTGTTCCTATAATTAAAATAAAAGAGGTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGATAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 43132-42766 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ957679.1 Streptococcus agalactiae strain PSS_7632a Scaffold158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43131 36 86.1 30 NNNNN............................... ACTTACAAAATCAGTTTCATCAGCGTATAG 43065 36 100.0 30 .................................... CGCTCGATTGATGCTATCAACTATATTGAA 42999 36 100.0 30 .................................... ATGTAAGGTATTGTAAAACTTCTTCTTGCG 42933 36 100.0 30 .................................... TTCTTCAAGAGAACTTGTAGAACAGCTTCA 42867 36 100.0 30 .................................... ACTGTTCCTATAATTAAAATAAAAGAGGTA 42801 36 86.1 0 ...............................NNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 95.4 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCGCTTCTGACCAACGTACAGTAACTTCAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCATTCAATCCAAATTAAATCAAATGATTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAAACATCATTGTATATTATGGCTTTAATAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTTAGTCTATCTCCTAAAGATTTCCTTAATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTAAAATACTGTAAAATCGTAATCAACGTAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACAGCTACTGTAAATTCTGCTTTTACGGTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTTAACCTTTGAAAATGTGAAAGGCTCGTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTAGTGCAGTTGTCAAGGAGATTGTGAGCGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 43523-43289 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ957679.1 Streptococcus agalactiae strain PSS_7632a Scaffold158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43522 36 100.0 30 .................................... TCATTCAATCCAAATTAAATCAAATGATTA 43456 36 100.0 30 .................................... CAAACATCATTGTATATTATGGCTTTAATA 43390 36 100.0 30 .................................... TTTAGTCTATCTCCTAAAGATTTCCTTAAT 43324 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAATTATCAATGTTTACAACTATTTTACTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGAAAAATTAAATACTTTCCAATAATAATTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTATGTTGATGAAAATAGGATACAAGATACGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCGCTTCTGACCAACGTACAGTAACTTCAA # Right flank : TAAAATACTGTAAAATCGTAATCAACGTAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACTTACAAAATCAGTTTCATCAGCGTATAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCGCTCGATTGATGCTATCAACTATATTGAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATGTAAGGTATTGTAAAACTTCTTCTTGCGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTCTTCAAGAGAACTTGTAGAACAGCTTCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACTGTTCCTATAATTAAAATAAAAGAGGTAGTTTTAGAGCTGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 4 43917-43749 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ957679.1 Streptococcus agalactiae strain PSS_7632a Scaffold158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43916 36 100.0 30 .................................... AATTATCAATGTTTACAACTATTTTACTTT 43850 36 100.0 30 .................................... GAAAAATTAAATACTTTCCAATAATAATTA 43784 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : TTATGTTGATGAAAATAGGATACAAGATACGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCGCTTCTGACCAACGTACAGTAACTTCAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCATTCAATCCAAATTAAATCAAATGATTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAAACATCATTGTATATTATGGCTTTAATAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTTAGTCTATCTCCTAAAGATTTCCTTAATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTAAAATACTGTAAAATCGTAATCAACGTAAGTTTTAGAGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //