Array 1 4702-5870 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFMA01000060.1 Pseudomonas oleovorans strain East River isolate A Contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4702 28 100.0 32 ............................ CCACATCACCCTGACGCGCGCAGACGGCGACC 4762 28 100.0 32 ............................ GAATACGAACATGCCGAGGGCCATCATCATGG 4822 28 100.0 32 ............................ GTCGAGTGATCCCCGCAGCCCGGCTCCGGCCG 4882 28 100.0 32 ............................ TGAGTGAGCCGTTTGCTGATGTCGCCCAGGGC 4942 28 100.0 32 ............................ TTGGCGCCCAGCAGTGCCTTGAGGCCGGTGTA 5002 28 100.0 32 ............................ TTGTAGGTGCCTTTGTCCACCAGGCCGGTGTC 5062 28 100.0 32 ............................ GCCACGCCTACCAAGGCGCTCAATCAACAGTT 5122 28 100.0 32 ............................ AGAACACCTATGGTGCTCGCGTCTGGCTGGAG 5182 28 100.0 32 ............................ AAGTTCCCCGACAAAGCGCAGGAGGTCGTCAC 5242 28 100.0 32 ............................ CGATCACGCTCAGCAGCAACGGCGGCGCCTGG 5302 28 100.0 32 ............................ GCATCACCGGCCACGCGCACGTCAACAGCCGC 5362 28 100.0 32 ............................ GGCACCGTCCACCACTTCGATCTCGGCCTGTT 5422 28 100.0 32 ............................ GGCACGTAGCGGAAGTCAAAGAAGACCTCCGG 5482 28 100.0 32 ............................ TGTTCTGACCATCATGCTGGCGGGCGAAGACT 5542 28 100.0 32 ............................ GCCACCAACCAGGCCATGGCCCAGCAAGAGGC 5602 28 100.0 32 ............................ TTGAAGGCTTCGCCATTGGTGGCGCCGCACTG 5662 28 100.0 32 ............................ ACGAACTGCTGTGCGGCTCCGGCCATAGCCTC 5722 28 100.0 32 ............................ CGCAGATGATGGCGAAGCCGCCGCCGGTGTAG 5782 28 100.0 32 ............................ TGCTGCAGAACGCGTTGCATCCGCTTGCGCTC 5842 27 82.1 0 ......................TT.CG- | AA [5863] Deletion [5869] ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.1 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGCGCTGGATAAGTTGCTGGCGCTGAACTGGCTCAGCGGCATGCGCGACCACTTGAACCTGGGTGAACTGGCGCCCATCCCGGCGAAGGTGCGCTGGCGCTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAGCGCGCCCGCCGCCGCCTGATCAAGCGCCACGGCATCAGCGAAGCAGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCTTATGCCACCTTGCGCAGCAACGGCAGCGGTCACAGCTTCCGCCTGTTTATCCGCCACGGCCCACTGCTCGACAAACCCACCCCCGGCACCTTCGGCGCCTACGGCCTTAGCGCCCAGGCCAGCGTGCCCTGGTTCTGACCCTTTTTCCCAGCCCAAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTAGCACCGGAAAAATCGGGCAGGTTCTTTAACAATCAAGCCGTTAGGGTTATTAGGCTCTA # Right flank : GCGCACTTCGCTTCGCTCCTGAGCCCGCCCTACGCAAAAATCCGTGTCCGGAACCAAGCCGCCGGTCTAAGCGGAATCGCAGATACGACTCGCTGCCGCACGGACTTTCAGGTGTCCAAACTACGAAACATCACATGGCAATCCACCAGGCCATACCGGGCGTGGCGGTAGGCCTTGGGCAAGGTGCCGACTATCGCGAAGCCGTGTTTCTGCCACAGCGCGACCGCGACCTCGTTGGTGGCCACCACGCTGTTGAACTGCATGGCGCTGAAGCCCAATTCACGCGCCACCTGCAGCGAATGGGCGCAGAGCCGGCTGGCGATGCCGCGGCCACGGGCGGCCGGGGCGGTCATATAGCCGCAGTTGCACACGTGGTCACCCGGCCCAGCGGCATTGGCCTTGATGTAGTAGGTGCCGAGAATCTGCCCGTCCTGCTCGGCAACGAAGGTGGCGCGCGGCAGTTCGACCCAGGTTTTCCAGGCCGTCTCACGATCCATGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30984-31433 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFMA01000203.1 Pseudomonas oleovorans strain East River isolate A Contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30984 28 92.9 33 .C..........A............... AGTTCCAACCAGGCTTCGACGAGCCTACGACAC 31044 28 96.4 33 ............A............... TGACCAACTCCGTCATCAAAGGCGAACAGCATC 31104 28 96.4 33 ............A............... ACGTCCCACGCTTTCATCACCAGCTGGGTTTTC 31165 28 100.0 32 ............................ TGGTCGAATCCGCCCAGCTCTACGCCCCGCCC 31225 28 100.0 32 ............................ TTCATGTGCGCGGCGCGTGGCTTGATCTTCTC 31285 28 100.0 33 ............................ GATCACGGCCAAACGCCCGTCGGCCACCATCAA 31346 28 96.4 32 ...........T................ TGCACGCAGAGGCCGAGTCGCTGCGGACTGAG 31406 28 75.0 0 ...........TA........C.GCC.C | ========== ====== ====== ====== ============================ ================================= ================== 8 28 94.6 33 CTTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : GTAAGCGGCCAACGCCGACAGCAGCAGGTGACTCAGCCAGAACGACACCGATTGACGCAACAAACTGACGTAGTCGACCTCATCGATCCGACCCCAGGTAATCAATGTGATGACAATGCCGATCACCCCGACCGCCAAGGCAACCCAAGCCACGTGGCGCGGCAATGCCGGCCACTCGCCCGGACTGGAATTCACTGCCGCAGCCGGCAAAGGTTCGAAGGGATTGGCTTGGCTCATGAGGTACTCCCTGTCGAGGTCTGAATCCATCGAAACGCGAGAGTACCGCCCCTCCCAGCAGGGCAATAGCTCGAGATGGCAGAACTGTGCGGTATGGCCAGACAACGGTCAGCACCTACAAGGCATGCCCATACCCATTTTTCTACGACGGACAAATCGTCTTTTAAAAATCAATGAGTTGCCGGATGACGAGAAAAAATGGTCAACCACCACCGAATCCCGCCATACCTTGAGCGATGCAAGTTTGCCGGCTATCGCGCCTA # Right flank : CTTGGCAGCCACAAGCAAAAGGGCTTAACTGCCAGCATTGTTTCAGGAGCCCCTCATGGACGACATCAGCCCCTCCGACCTCAAGACCATCCTCCATTCCAAACGCGCCAACCTCTACTACCTGCAGCACTGCCGGGTGCTGGTCAACGGTGGGCGGGTGGAGTACGTGACCGACGCAGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAACACCACCACTATCCTCCTCGGCACCGGCACCTCGATCACCCAGGCGGCGATGCGTGAGCTGGCCAAGGCCGGCGTGCTGGTGGGTTTCTGTGGCGGTGGCGGCACACCGCTGTTCTCGGCCAACGAGATGGACGTGGAGGTCGCCTGGTTCTCGCCGCAGAGCGAGTACCGCCCCACCGAGTACCTGCAGAAGTGGGTAGGGTTCTGGTTCGATGACGGCAAGCGCCTGGAGGCGGCCAAAGCCTTTCAACTGGCGCGCCTGCAACGTATCCGCCAGGGCTGGC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : TCACTGCCGAGTAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 47859-44229 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFMA01000038.1 Pseudomonas oleovorans strain East River isolate A Contig_147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47858 29 100.0 32 ............................. GCACCGCGCACGCACAGAGGCAGGATCAGCGC 47797 29 96.6 32 ............................C GGCCCGCCACTTCCTCACCCGCGCCCTGGAGC 47736 29 100.0 32 ............................. GCCGCCGAACTACAGGCCCTGGCCGGCTTGAT 47675 29 100.0 32 ............................. CCATTGAAAACGCTGGGCTTTCTCCTTTCTCA 47614 29 100.0 32 ............................. CAGGCCAACGCCACCGCCCTCGGCATTCCCTG 47553 29 100.0 32 ............................. TTGATCGTCGACGGCAACGTTGAAGTTGAGAT 47492 29 100.0 32 ............................. CCAAGCAGGCCGACCAAATCAGCAAGGTCATC 47431 29 100.0 32 ............................. GCCATGCAGGCCAGCCGCGACAAGGTTCGCCA 47370 29 100.0 32 ............................. TCTGAATGCACCCAGTAATCGTGACCGCCGGC 47309 29 100.0 32 ............................. CCCAGCCCACCGGCGCCGGCACCGGCCGAGCC 47248 29 100.0 32 ............................. GCCGCTCCGGCCAAGCTGGAGAAAGTAAAGCT 47187 29 100.0 32 ............................. GCGTTGCAGGACCCCATAAACGGTATCAACGC 47126 29 100.0 33 ............................. CTGGTGGTGGCGCGCCTGCGCGCCAATGGCAAG 47064 29 100.0 32 ............................. CCTGCTCTTGGGCTTCTGCCAGGTGCGCGGCA 47003 29 100.0 32 ............................. GCCATGCAGGTGAGCCGCCTGCTCCTGATGCC 46942 29 100.0 32 ............................. ACAGCTACAGCCAGCTAAAGCGCGACGAGGGC 46881 29 100.0 32 ............................. GCGGCTTCCGTTTCTGGGGCTCGCGCACCTGC 46820 29 100.0 32 ............................. CGCCACCGTGATCGAGTACCAGGTCATCGCCG 46759 29 100.0 32 ............................. GTCGCCGAAGTGCTGGCCGGTACCGGCGGCGC 46698 29 100.0 32 ............................. CTGATCGTCGACGGCAACGTCGAAGTGGAGAT 46637 29 100.0 32 ............................. GCACCCTGGCCGCCGCGCTGGATGCCATCGCC 46576 29 100.0 32 ............................. GTCAGCGCACGGTGCTTGATCGTCCGGTTGTC 46515 29 100.0 32 ............................. ACGATATGGGTGCATGAGCCCAGCCGCCAGGC 46454 29 100.0 32 ............................. CGCCGGCTGAAGCTGTTACGGCCTGCCCTGGA 46393 29 100.0 32 ............................. TTGCAGCGGCTGATTCTTGTCAGGTAAGCCAT 46332 29 100.0 32 ............................. CCAACATCAGCCGGCACCTTGCCCAGGTAGGG 46271 29 100.0 32 ............................. CTCTGGACGGCCGTTTACTGCCGTGCCCTGCG 46210 29 100.0 32 ............................. ACGCCATCATGCGTATGACTGCGACGGTGGCC 46149 29 100.0 32 ............................. GTGACGGCCTTGCGACCACGCAACAACGCCCC 46088 29 100.0 32 ............................. GCGGCACGGTAGTTACTGAGCCGATTCTAGCC 46027 29 100.0 32 ............................. CCTGCCACCACTCCCCGGAAAGCTGGGGACAG 45966 29 100.0 32 ............................. GGGTACTGGACTGACGATGCCAGGGTGAAGAT 45905 29 100.0 32 ............................. ACATACAAGGCGCATCGCCTGGTATGGCTTAT 45844 29 100.0 32 ............................. CACTGGTGGCTCCTGCTCGACGACCTCAGGCA 45783 29 100.0 32 ............................. GCGCCGCCGTTGCAGGCGGCGCACTCCATCAG 45722 29 100.0 32 ............................. CCTGCTGCGGCACCCCTGCACGGAATGCCAGG 45661 29 100.0 32 ............................. GCTTCATCGGGCGTGCCAGGGTATTCCTGCCA 45600 29 100.0 32 ............................. GCCGGCAGTGCGGCGGCGTTCTTGCCGTCCTC 45539 29 100.0 32 ............................. CATCACACCAATGTAGTGGCCGCGGTCTTCAA 45478 29 100.0 32 ............................. GCCGACCCCTTCACTGTCAACCCGCTCTTCGC 45417 29 100.0 32 ............................. CTCGACGAGCTCAGCGAAGGCCTGATCGCGTT 45356 29 100.0 32 ............................. ACGGGCGCCGATGCCGGAACTGCGGACATAGC 45295 29 100.0 32 ............................. GCACTCCAGAGTGGCTGAAACTTCGCCTGGGA 45234 29 100.0 32 ............................. CAATGCGTTAACTGCCCTGGTGCGACTGATCA 45173 29 100.0 32 ............................. GCGAAGCGGTTGCCGCATTCGCTCTTAACCTG 45112 29 100.0 32 ............................. GGCTGCCCGGCCTAGCGCCGCAACCGGCTCGC 45051 29 100.0 32 ............................. AGTGGCCAAATTCGCAATATCAGACATTCATG 44990 29 100.0 32 ............................. TTGACGTGATCCTGTCCGGCGAGATCCCGAAA 44929 29 100.0 33 ............................. ATTGGCCAGCTCCAGCGCGCTGGTAGCCTTACC 44867 29 100.0 32 ............................. GTTCGCTTCCTCGCACCGAATACACCGGTGAA 44806 29 100.0 32 ............................. AGCAGCGTGTCGTTTCTATTGTGTGAGGCGAG 44745 29 100.0 32 ............................. ATCACGCATTCGGCTAAGGTGCCAGGCCAGAC 44684 29 100.0 32 ............................. ATAAGGCAGGTCAATGCCCTCGCTAAACCCTA 44623 29 100.0 32 ............................. TCTAGGCCAGCCGTTGCGCTTTTAGATGCGCC 44562 29 100.0 32 ............................. GTGCCGTAGCCTGCTGCTATATGGCCAGCCTC 44501 29 100.0 32 ............................. CCATCACCCAAGCCCCAGGCCCCCAGCAGGTG 44440 29 100.0 32 ............................. TCGGGCCTGCAGGAGTAGACGCAGGTGGAGCA 44379 29 96.6 32 ....A........................ GGCGACGTTCCCACCATAGGCCATGGCTCGAC 44318 29 100.0 32 ............................. CTGGTGTGCAATAGTCGGCCACATCAGATGTG 44257 29 89.7 0 .........................G.TT | ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCGAAGATCATCCCCACCATCGAAGAGGTGCTGTCCGCAGGTGGTATCTCGCCACCCGAGGCACCGCCGGAGTCCGTACCACCAGCTATCCCCAACCCGGAAAGTATCGGCGATGCCGGGCACAGGGCGCAGTAATGAGCTTTCTGGTCGTGGTCACCGAGAACGTACCGCCGCGCTTGCGCGGACGCATGGCTATCTGGCTGCTGGAGGTGCGTGCCGGCGTCTATATCGGTGATGTCTCCAAGCGCACCCGCGAAATGATCTGGGAACAACTGAGCCGGGGGCATGAAGATGGCAGCGTTGTTATGGCCTGGGCGAGCAACCACGAGTCGGGTTACGAGTTCCAGACGCTAGGCCCGAACCGTCGTTTGCCGGTGGACTTTGATGGCTTGAATCTGGTCGCCTTTCAGCCCTTGGAAAACCCTGATCTTTAACAAGGAAAAGTTGGTAGATTTTTAGCGGCTAATTTTCCCCTCTGGGGACAATTGGTTACGCTAAGA # Right flank : GGAGGGGGGCTCGGCACGCTGTTTTTTAGCCGGGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGTACATGACGCGGATGAAAAGGGAATAGGGTGCGGCGAATCTCGCCAACGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCTCATGCCACTGACTCCGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGATAACGGGCGTTTCGCCCATCCTTCATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACGCAACGGCCGTCACCGCTTTCGGCCTGACCGCCAAACTCGCCCTGGACAGCGTCCGCAACAACGGCGGTGTCGCCGCCCTGGCGCTGCGCAGCCTGCTGACCACCGCGCTGGTGTTCTGCTTCTTCGAGGTGTTTCCGCATCATGCGGTGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63233-62044 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFMA01000038.1 Pseudomonas oleovorans strain East River isolate A Contig_147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63232 29 100.0 32 ............................. GCGACCATGGCGCGCAGCGCCCAGCCAGGGTT 63171 29 100.0 32 ............................. CCCGGAGCGCGCACTAATGCACGGCCTGAACA 63110 29 100.0 32 ............................. ACCCGGAGCGCATTGGCCTGCCTGAGCATGAT 63049 29 96.6 32 ............................T ACCGGGCAGACGGCATTCAACAATCTCGACGC 62988 29 100.0 32 ............................. CCCCGATGGGCATGTTTGATGATGACCTGATC 62927 29 100.0 32 ............................. TCGTCGCGGCTGATGTTCTTTATTGCCGCGAA 62866 29 100.0 32 ............................. CGCCCCGGCGCCGTGGCAGGCAAGGAAGTATC 62805 29 100.0 32 ............................. CTGCATGATGGTTTTGCCAAGGCCAGTGTCGG 62744 29 100.0 32 ............................. CGGCCCGGCTACCCGAACGGGTAATAGTTTGT 62683 29 100.0 32 ............................. GCGCGCATCCACTCGCCAGCACGGGCATTGAT 62622 29 100.0 32 ............................. ATGTCTGCGCTAAACGTCCAGCTGAAGCTGTC 62561 29 100.0 32 ............................. CAGATGGATGTACTGCTCGAATCTGGCTACAC 62500 29 100.0 32 ............................. GTAAAAGTAAAAAAGGGGCGCAGGCCCCGAAA 62439 29 100.0 32 ............................. ACTTGCAGATCCGCCTCAAGGTGGAAGAAATG 62378 29 100.0 32 ............................. CGGATGAGTGGGAGGATGCCCGGCCATCAGGC 62317 29 100.0 32 ............................. GCGATCGCAACCAACGTCGGCAGCTATCGGCC 62256 29 100.0 32 ............................. CGCACCGCGTTGCCAGCCGCCCAACCGGAGCC 62195 29 100.0 32 ............................. CATGACGCCGCTGCGCGTGTTCCAAGCTCTGC 62134 29 100.0 33 ............................. TTCTCCCGCGCCGATAACCGATTCATCGACCAG 62072 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GGAAACCATCATGCCGCGCCTGTACCGCGAGGCGCCGGTCAACTCGATCTGGGAGGGTTCAGGCAACGTGCAATGCCTGGACGTGCTGCGCGCTATGTCCAAGGAACCCGGTGTGCTCGATGCGCTGTTCGCCGAGCTGGGTGATGGCCACGGCGATACCCGCCTCAAGGCGCACATCCAGCGGCTCAAGGCAGATTTCGCTGACACAGCCGATATCCAGTACCGCGCGCGCCGGCTCACCGAAGACATGGCCGTAGCCCTGCAGGCGAAGCTGCTGCTGGAGGCGGGCAACGCCACTGTCTCCGATGCCTTTATCGCCAGCCGGCTGGAAGGCCGTGGCCGCGTCTACGGCACCCTGCCGCGCGGTGTCGACGTCGAGGCGCTGCTGGCGCGTAGCACGCCGAATCTGCTTTGATACAGGGGCAATCTTTAACAAGGAGAAGTTGGTAGGTTTTTAGCGGCTGATTTTCTCCTTTAAGGAACAATTGGTTAGGCTAAGT # Right flank : GCTCAAGCCAAGACGCACGAATCCTTAGGAGCGAGCTCTGCTCGCGAAGCTTCTGACTCATCCAGATTCACGAGCAGAGCTCGCTCCTACAGGTCAGGCAGTCAGGCGTATTCACCGCGGCGCACTGGTCTCCCCCTGCGCTGTTGTCAGTCCAGAACGATGCTGGCACTTTGTTGGGCCAGTAACGATGCGATGCAAGGAGTGCCAGATGAAAGGATTCGCCGATCTCAGCGAGCAGGCCCGCCGTCTTTGGGCCAAGAGTGGCGATGGCTTCGGTCATGGTGTGCTGGCGCATTTGCTGGATGTGGCGGCGGTGGCCGAGCGGATGCTGGCCCATGAGCCTCCGAGTACGCTGGACTGGGCCGCTCAAGCGCTGGGGTTGGAGCGCGAGCATGTCGCCCGCTGGGTTGCCTGCCTGGTGGGCCTGCATGACTTCGGCAAGGCCATCCCCGGCTTTCAGGACAAGTGGCTCGCAGGGCGGCAGGCTGATGAGGCGCTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //