Array 1 194173-195559 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJY01000002.1 Cronobacter sakazakii strain cro3915C2 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 194173 29 96.6 32 .C........................... CCAGCACGTAAACAAATAAGGGCATGGCAATA 194234 29 96.6 32 .C........................... CTGGGCGGCATTTCATCAGACATAATGAACGT 194295 29 93.1 32 .C..........................T GGGCCGACGTCGAGGGCAAAGAAACCCCAACC 194356 29 96.6 32 .C........................... ATCAATTGTTGCAATGGCCGCGGCAATTGCTG 194417 29 96.6 32 .C........................... GCCGCGTTTTTCGCTTTCCGCCCCCACTCGTC 194478 29 96.6 32 .C........................... GAAAAAAATATAACGAAATCGCCACCAACATG 194539 29 96.6 32 .C........................... TTCCGTTTGGATCAGACGTTGTAACGACAAGG 194600 29 96.6 32 .C........................... TGCCTGATTGATTTCAGCGTTGCGGGCCTCAA 194661 29 96.6 32 .C........................... GAAGGTTTATATGTCGGCCCGTTTATCCTTCC 194722 29 100.0 32 ............................. GTGAAGCTGGTTTCACCGTCCCTGGGGTCGTG 194783 29 100.0 32 ............................. TTCGCCAGGATCACGCCCCGCCACTACCACAA 194844 29 100.0 32 ............................. CGCAGCGCGCCGGACGATTACCGCTCGGCCAC 194905 29 100.0 32 ............................. ACGCGCCAGTTTTGTTCGCACTGCCTGCGCTG 194966 29 100.0 32 ............................. GCGGACAATCAGCGTTCCGGCATCGAATGCGG 195027 29 100.0 32 ............................. CGCAATACGGTCGGCTGAATATCCTGTTTAAT 195088 29 100.0 32 ............................. GCCGCGCCGTATTAACGTACCTGCAATGATTC 195149 29 100.0 32 ............................. TAGGCGTTTCAATTGGCATTTTTCTCACCCTC 195210 29 100.0 32 ............................. CCGCCGCAGCCGCCGCACAATCAGCTGCTGCC 195271 29 100.0 32 ............................. GGAGGATGTGGATCTGAAGGCGGGTACGGTAA 195332 29 100.0 33 ............................. CCGCAGAGAAGCGCAATGCGGAGATTGAGAGGC 195394 29 100.0 9 ............................. CGCGAGCGG Deletion [195434] 195432 29 79.3 9 GGA.AAA...................... CGCGAGCGG Deletion [195472] 195470 29 79.3 32 GGA.AAA...................... CGCGAGCTTTTCCGCCCACATCGCGTTAAGTG 195531 29 96.6 0 ......................C...... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 96.7 30 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAATAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAATGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATACCAATCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTCCCCGCCAGCCGTAATAAACCGCTCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTTTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 76963-76696 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJY01000004.1 Cronobacter sakazakii strain cro3915C2 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76962 28 100.0 32 ............................ TTAGATTGCGTGCGCTCGGCCCACTGAATCAT 76902 28 100.0 32 ............................ GCCAGATGACGGCGTCCAGGTGAACAAATCCT 76842 28 100.0 32 ............................ CGTGGGTGTGGGTAATCGAATTCCGTCGCATG 76782 28 100.0 32 ............................ ATCCACGCGGACTGAGAGCCGACTGCATTGCT 76722 27 89.3 0 .....................CG-.... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATGCGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGATGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAACAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGTAGCATTCAGCTGACGGTTCTGGCGGGCAAAACCGCGTTTGCCGGTAAAAATGCCACGACCTGGGGCTATAACGGTTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGTGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //