Array 1 193503-191643 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVA01000007.1 Salmonella enterica subsp. enterica serovar Goldcoast strain SalGC_ZJ_84 NODE_7_length_238876_cov_119.985448, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 193502 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 193441 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 193380 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 193319 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 193258 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 193197 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 193136 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 193075 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 193014 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 192953 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 192892 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 192831 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 192770 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 192709 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 192648 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 192587 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 192526 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 192465 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 192404 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 192343 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 192282 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 192221 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 192160 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 192099 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 192038 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 191977 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 191916 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 191855 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 191794 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 191733 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 191672 29 96.6 0 ............T................ | A [191645] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 212055-210075 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVA01000007.1 Salmonella enterica subsp. enterica serovar Goldcoast strain SalGC_ZJ_84 NODE_7_length_238876_cov_119.985448, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212054 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 211993 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 211932 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 211871 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 211810 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 211749 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 211688 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 211627 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 211566 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 211505 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 211444 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 211383 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 211322 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 211261 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 211200 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 211139 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 211078 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 211017 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 210956 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 210895 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 210834 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 210773 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 210712 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 210651 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 210590 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 210529 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 210468 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 210407 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 210346 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 210285 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 210224 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 210163 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 210102 28 93.1 0 ............T............-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //